Wall clock time and date at job start Tue Mar 31 2020 10:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47622 * 2 1 4 4 C 1.42899 * 114.00603 * 181.54368 * 3 2 1 5 5 H 1.09008 * 109.46485 * 339.62937 * 4 3 2 6 6 C 1.52998 * 109.47206 * 219.63170 * 4 3 2 7 7 C 1.50696 * 109.47160 * 64.99576 * 6 4 3 8 8 O 1.21284 * 120.00287 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00115 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00452 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.63577 * 34.29619 * 10 9 7 12 12 C 1.54324 * 110.72144 * 271.16141 * 10 9 7 13 13 N 1.47020 * 107.27021 * 219.44020 * 12 10 9 14 14 C 1.36934 * 125.64907 * 178.97089 * 13 12 10 15 15 H 1.08001 * 119.99915 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99840 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00293 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99795 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46875 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47004 * 119.99955 * 18 16 14 21 21 H 1.48498 * 109.46997 * 240.00243 * 18 16 14 22 22 C 1.47427 * 108.70414 * 358.94230 * 13 12 10 23 23 C 1.55126 * 104.94426 * 23.99968 * 22 13 12 24 24 H 1.08998 * 111.16462 * 205.13409 * 23 22 13 25 25 O 1.42901 * 110.93290 * 81.21591 * 23 22 13 26 26 C 1.52996 * 109.47134 * 99.62606 * 4 3 2 27 27 C 1.53002 * 109.47182 * 294.54418 * 26 4 3 28 28 C 1.52996 * 109.46957 * 54.54792 * 26 4 3 29 29 H 1.09004 * 109.47547 * 59.99494 * 1 2 3 30 30 H 1.08994 * 109.47732 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46746 * 300.00032 * 1 2 3 32 32 H 1.09004 * 109.46746 * 239.99968 * 2 1 3 33 33 H 1.08994 * 109.47534 * 120.00337 * 2 1 3 34 34 H 1.09003 * 109.47039 * 184.99412 * 6 4 3 35 35 H 1.08995 * 109.46830 * 304.99836 * 6 4 3 36 36 H 0.97003 * 120.00110 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.88125 * 338.85885 * 12 10 9 38 38 H 1.08995 * 109.88412 * 100.02581 * 12 10 9 39 39 H 0.97001 * 120.00132 * 179.97438 * 17 16 14 40 40 H 1.08992 * 110.37154 * 142.96690 * 22 13 12 41 41 H 1.09003 * 110.36371 * 265.18142 * 22 13 12 42 42 H 0.96699 * 113.99713 * 67.96725 * 25 23 22 43 43 H 1.09002 * 109.46794 * 174.54662 * 26 4 3 44 44 H 1.08994 * 109.47315 * 305.83559 * 27 26 4 45 45 H 1.08999 * 109.47044 * 65.84494 * 27 26 4 46 46 H 1.09005 * 109.46932 * 185.83924 * 27 26 4 47 47 H 1.09000 * 109.47489 * 59.99577 * 28 26 4 48 48 H 1.09006 * 109.47332 * 179.97438 * 28 26 4 49 49 H 1.09002 * 109.47262 * 299.99583 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4305 1.4603 -0.0352 5 1 3.8775 0.5253 0.3030 6 6 3.8745 2.5997 0.8842 7 6 3.5371 2.2540 2.3116 8 8 2.9952 1.1998 2.5685 9 7 3.8374 3.1163 3.3029 10 6 3.5089 2.7806 4.6906 11 1 3.6109 1.7088 4.8610 12 6 2.0843 3.2565 5.0450 13 7 2.1289 3.7836 6.4167 14 6 1.0713 4.3232 7.0991 15 1 0.1013 4.3873 6.6286 16 6 1.2459 4.7868 8.3958 17 7 2.4279 4.7082 8.9693 18 14 -0.1969 5.5223 9.3269 19 1 -1.4070 5.4949 8.4664 20 1 -0.4473 4.7301 10.5578 21 1 0.1164 6.9260 9.6967 22 6 3.5004 3.6343 6.9363 23 6 4.4022 3.5805 5.6752 24 1 5.3321 3.0494 5.8787 25 8 4.6635 4.8944 5.1778 26 6 3.8836 1.7538 -1.4667 27 6 3.5604 0.5544 -2.3600 28 6 3.1515 2.9913 -1.9897 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.9509 2.7441 0.7900 35 1 3.3586 3.5171 0.6009 36 1 4.2712 3.9594 3.0976 37 1 1.7738 4.0419 4.3559 38 1 1.3896 2.4183 4.9924 39 1 2.5500 5.0326 9.8753 40 1 3.7660 4.4896 7.5574 41 1 3.5917 2.7096 7.5061 42 1 5.2182 5.4320 5.7595 43 1 4.9583 1.9358 -1.4775 44 1 3.9969 -0.3470 -1.9300 45 1 2.4793 0.4360 -2.4322 46 1 3.9750 0.7200 -3.3545 47 1 3.3817 3.8457 -1.3532 48 1 3.4746 3.2008 -3.0095 49 1 2.0768 2.8093 -1.9789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219797963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:01 Heat of formation + Delta-G solvation = -140.805039 kcal Electronic energy + Delta-G solvation = -27796.885217 eV Core-core repulsion = 23951.580953 eV Total energy + Delta-G solvation = -3845.304264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15940 -39.92476 -38.91225 -36.37787 -35.79473 -35.36236 -33.62764 -32.48008 -31.19560 -30.12483 -28.65508 -27.99054 -26.52733 -24.96081 -23.58488 -22.43764 -21.77731 -21.15976 -20.83365 -19.23087 -18.26925 -18.03862 -17.60272 -17.01870 -16.79902 -16.70541 -16.07598 -15.74581 -15.69217 -15.09837 -14.93312 -14.75888 -14.53286 -14.36547 -14.26504 -13.95710 -13.59542 -13.37321 -13.23460 -13.05467 -12.94337 -12.90877 -12.78476 -12.70814 -12.49265 -12.24728 -12.10675 -12.09425 -11.92098 -11.86899 -11.82429 -11.52591 -11.41733 -10.94465 -10.76946 -10.71118 -10.20034 -10.02121 -8.91966 -7.82504 -5.25936 1.45042 1.45759 1.56378 1.73265 2.18885 2.47988 2.86896 3.21847 3.28463 3.59862 3.78199 3.82282 3.85807 3.95805 4.03675 4.19060 4.21046 4.30474 4.37855 4.44637 4.50339 4.52904 4.55745 4.60007 4.72831 4.74685 4.84682 4.85517 4.90997 4.96964 5.02098 5.06795 5.09989 5.11524 5.26893 5.28438 5.32854 5.44554 5.45660 5.55139 5.56999 5.70149 6.24196 6.44712 6.68688 6.91804 7.07330 7.37010 7.71410 8.34394 9.19665 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.003038 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.131759 B = 9214.053934 C = 9970.036258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.388 6.388 4 C 0.107 3.893 5 H 0.057 0.943 6 C -0.137 4.137 7 C 0.507 3.493 8 O -0.578 6.578 9 N -0.702 5.702 10 C 0.156 3.844 11 H 0.092 0.908 12 C 0.134 3.866 13 N -0.616 5.616 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.060 4.060 17 N -0.945 5.945 18 Si 0.981 3.019 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.126 3.874 23 C 0.092 3.908 24 H 0.095 0.905 25 O -0.562 6.562 26 C -0.108 4.108 27 C -0.149 4.149 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.417 0.583 37 H 0.019 0.981 38 H 0.004 0.996 39 H 0.250 0.750 40 H 0.091 0.909 41 H -0.002 1.002 42 H 0.396 0.604 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 -5.042 -22.017 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.308 6.308 4 C 0.049 3.951 5 H 0.075 0.925 6 C -0.176 4.176 7 C 0.296 3.704 8 O -0.458 6.458 9 N -0.355 5.355 10 C 0.049 3.951 11 H 0.110 0.890 12 C 0.007 3.993 13 N -0.342 5.342 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.253 4.253 17 N -0.594 5.594 18 Si 0.809 3.191 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.001 3.999 23 C 0.031 3.969 24 H 0.112 0.888 25 O -0.370 6.370 26 C -0.127 4.127 27 C -0.206 4.206 28 C -0.198 4.198 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.156 0.844 35 H 0.129 0.871 36 H 0.255 0.745 37 H 0.037 0.963 38 H 0.022 0.978 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.016 0.984 42 H 0.246 0.754 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.594 -5.750 -22.146 24.108 hybrid contribution -0.474 0.519 1.537 1.691 sum 7.120 -5.231 -20.609 22.422 Atomic orbital electron populations 1.21718 0.93897 1.02804 1.02000 1.22551 0.95530 0.83855 0.99733 1.87847 1.21202 1.26801 1.94910 1.21931 0.81754 0.97185 0.94278 0.92464 1.22018 1.05375 1.01587 0.88619 1.21357 0.77232 0.83315 0.88546 1.90663 1.43646 1.26404 1.85037 1.45750 1.61738 1.22811 1.05172 1.21720 0.93178 0.98549 0.81631 0.88998 1.21618 0.96006 0.94856 0.86828 1.44565 1.07500 1.70935 1.11237 1.19417 0.89512 1.32096 0.96058 0.91102 1.25557 0.99970 1.02191 0.97556 1.69949 1.22214 1.53217 1.14039 0.84977 0.78498 0.77558 0.78056 1.19804 1.21659 1.21189 1.22542 0.83491 1.00218 0.93671 1.23295 0.96676 0.84203 0.92714 0.88758 1.86206 1.75085 1.25583 1.50128 1.21594 1.01291 0.96684 0.93113 1.21901 1.01565 0.97225 0.99915 1.21743 1.00293 0.96811 1.01000 0.91483 0.89702 0.94217 0.91753 0.95097 0.84399 0.87075 0.74536 0.96278 0.97757 0.94016 0.89101 0.98362 0.75414 0.88417 0.92779 0.93050 0.91224 0.92278 0.91816 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 10.28 71.98 0.74 -2.53 16 2 C 0.06 1.44 5.96 71.98 0.43 1.87 16 3 O -0.39 -10.19 8.14 -135.20 -1.10 -11.30 16 4 C 0.11 2.22 1.50 30.59 0.05 2.26 16 5 H 0.06 1.30 7.52 -2.38 -0.02 1.28 16 6 C -0.14 -2.70 5.05 29.85 0.15 -2.55 16 7 C 0.51 15.13 7.71 87.66 0.68 15.80 16 8 O -0.58 -21.95 14.68 10.73 0.16 -21.80 16 9 N -0.70 -21.11 5.08 -436.91 -2.22 -23.33 16 10 C 0.16 5.84 3.15 46.18 0.15 5.99 16 11 H 0.09 3.59 7.62 -2.39 -0.02 3.57 16 12 C 0.13 6.31 7.00 86.73 0.61 6.92 16 13 N -0.62 -33.22 3.40 -691.56 -2.35 -35.56 16 14 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 15 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 16 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 17 N -0.94 -55.22 10.09 21.65 0.22 -55.00 16 18 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 C 0.13 6.07 5.62 86.93 0.49 6.56 16 23 C 0.09 3.24 4.31 32.06 0.14 3.38 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 O -0.56 -17.91 12.23 -148.98 -1.82 -19.73 16 26 C -0.11 -1.57 2.75 -10.80 -0.03 -1.60 16 27 C -0.15 -2.02 8.01 71.98 0.58 -1.44 16 28 C -0.14 -2.09 8.75 71.98 0.63 -1.46 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.24 5.84 -2.38 -0.01 1.23 16 33 H 0.03 0.88 7.80 -2.39 -0.02 0.86 16 34 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.11 2.06 6.83 -2.39 -0.02 2.05 16 36 H 0.42 10.75 7.58 -92.71 -0.70 10.04 16 37 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.09 4.82 5.87 -2.39 -0.01 4.80 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.40 9.86 9.12 -74.06 -0.68 9.18 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.80 6.61 -2.39 -0.02 0.78 16 46 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.06 0.83 6.69 -2.39 -0.02 0.81 16 48 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.05 0.86 7.55 -2.39 -0.02 0.84 16 Total: -1.00 -73.67 383.09 0.41 -73.26 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.43 Total: 28.16 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.93 Total: 16.91 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.35 Total: -113.89 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -2.77 Total: -52.82 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.67 0.41 -73.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219797963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.545 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds