Wall clock time and date at job start Tue Mar 31 2020 10:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47058 * 2 1 4 4 C 1.34229 * 116.99692 * 179.97438 * 3 2 1 5 5 O 1.20834 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99956 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47043 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47261 * 55.00060 * 7 6 4 9 9 C 1.50699 * 109.47078 * 174.99981 * 7 6 4 10 10 H 1.07995 * 120.00240 * 240.00084 * 9 7 6 11 11 C 1.37887 * 119.99701 * 59.72418 * 9 7 6 12 12 N 1.31511 * 120.00137 * 0.27623 * 11 9 7 13 13 Si 1.86797 * 119.99617 * 180.27516 * 11 9 7 14 14 H 1.48499 * 109.47252 * 90.00469 * 13 11 9 15 15 H 1.48500 * 109.46859 * 209.99893 * 13 11 9 16 16 H 1.48496 * 109.47493 * 330.00069 * 13 11 9 17 17 O 1.42902 * 109.47144 * 295.00218 * 7 6 4 18 18 C 1.42901 * 113.99847 * 150.00305 * 17 7 6 19 19 C 1.53004 * 109.47084 * 179.97438 * 18 17 7 20 20 N 1.46902 * 109.47181 * 65.15365 * 19 18 17 21 21 C 1.46961 * 111.00029 * 199.60121 * 20 19 18 22 22 C 1.53053 * 109.35944 * 176.81283 * 21 20 19 23 23 N 1.46956 * 109.36771 * 58.39949 * 22 21 20 24 24 C 1.46902 * 110.99931 * 176.80737 * 23 22 21 25 25 C 1.46953 * 110.87990 * 300.68049 * 23 22 21 26 26 C 1.46956 * 110.99931 * 75.79896 * 20 19 18 27 27 H 1.09003 * 109.46989 * 300.00874 * 1 2 3 28 28 H 1.09006 * 109.46741 * 59.99890 * 1 2 3 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47135 * 239.99477 * 2 1 3 31 31 H 1.09004 * 109.46778 * 119.99559 * 2 1 3 32 32 H 1.08998 * 109.46846 * 59.99910 * 6 4 3 33 33 H 1.09000 * 109.46861 * 299.99971 * 6 4 3 34 34 H 0.96995 * 120.00172 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47226 * 299.99720 * 18 17 7 36 36 H 1.08998 * 109.47581 * 59.99974 * 18 17 7 37 37 H 1.08997 * 109.47441 * 185.15777 * 19 18 17 38 38 H 1.09002 * 109.46831 * 305.15926 * 19 18 17 39 39 H 1.08995 * 109.48393 * 296.77546 * 21 20 19 40 40 H 1.08996 * 109.48818 * 56.84465 * 21 20 19 41 41 H 1.09001 * 109.49212 * 298.42643 * 22 21 20 42 42 H 1.09001 * 109.50159 * 178.37638 * 22 21 20 43 43 H 1.08996 * 109.46753 * 183.80248 * 24 23 22 44 44 H 1.08997 * 109.46963 * 303.80144 * 24 23 22 45 45 H 1.08996 * 109.47022 * 63.80027 * 24 23 22 46 46 H 1.09002 * 109.48555 * 299.34693 * 25 23 22 47 47 H 1.08995 * 109.48888 * 179.29063 * 25 23 22 48 48 H 1.09004 * 109.48570 * 303.15758 * 26 20 19 49 49 H 1.08995 * 109.48487 * 63.22273 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8573 0.0014 8 1 5.7814 2.2490 -0.8396 9 6 6.0246 4.2443 -0.1230 10 1 6.6601 4.4921 -0.9602 11 6 5.7354 5.1987 0.8293 12 7 4.9616 4.8970 1.8489 13 14 6.4431 6.9202 0.6710 14 1 5.5069 7.7706 -0.1071 15 1 6.6337 7.5033 2.0234 16 1 7.7511 6.8554 -0.0290 17 8 5.8935 2.2646 1.2233 18 6 7.1167 1.5356 1.1041 19 6 7.4954 0.9487 2.4655 20 7 6.4914 -0.0460 2.8662 21 6 6.5400 -0.2892 4.3148 22 6 5.4295 -1.2686 4.7023 23 7 5.6021 -2.5219 3.9546 24 6 4.5981 -3.5166 4.3554 25 6 5.5536 -2.2786 2.5062 26 6 6.6640 -1.2993 2.1185 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5844 3.4700 0.8895 33 1 3.5853 3.4690 -0.8905 34 1 4.7585 5.5683 2.5189 35 1 6.9899 0.7285 0.3827 36 1 7.9072 2.2051 0.7650 37 1 8.4726 0.4710 2.3961 38 1 7.5327 1.7464 3.2073 39 1 7.5082 -0.7139 4.5798 40 1 6.3972 0.6515 4.8464 41 1 4.4598 -0.8325 4.4622 42 1 5.4814 -1.4730 5.7717 43 1 4.7900 -4.4558 3.8366 44 1 4.6558 -3.6776 5.4318 45 1 3.6037 -3.1542 4.0950 46 1 4.5853 -1.8540 2.2410 47 1 5.6963 -3.2193 1.9744 48 1 6.6117 -1.0949 1.0491 49 1 7.6336 -1.7353 2.3588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224551954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:05 Heat of formation + Delta-G solvation = -118.341696 kcal Electronic energy + Delta-G solvation = -28564.146493 eV Core-core repulsion = 24719.816313 eV Total energy + Delta-G solvation = -3844.330180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.54562 -38.99579 -36.78251 -35.70024 -34.95330 -32.73930 -31.46841 -30.72106 -30.30053 -29.09780 -26.51780 -25.92366 -23.61145 -23.22654 -23.04473 -21.50475 -20.82701 -19.63960 -19.47178 -17.00129 -16.39153 -16.11836 -15.96377 -15.41283 -15.09961 -14.86779 -14.75817 -14.64782 -14.36835 -14.10022 -13.95144 -13.51097 -13.16402 -13.03685 -12.57934 -12.42900 -12.33705 -12.10958 -11.90579 -11.80627 -11.62166 -11.30963 -11.22632 -11.03694 -10.98184 -10.84302 -10.83060 -10.64758 -10.53670 -10.38861 -10.06000 -9.98112 -9.69652 -9.38796 -8.99167 -8.55225 -8.28952 -7.75255 -7.67550 -5.99980 -4.18625 3.25910 3.28427 3.35936 3.38453 3.51144 4.03769 4.31449 4.39846 5.05203 5.09678 5.12981 5.15913 5.23576 5.31576 5.41339 5.44097 5.47549 5.55766 5.60164 5.65873 5.67396 5.71729 5.80010 5.95203 5.97037 5.98849 6.05663 6.08798 6.16939 6.18192 6.20319 6.30677 6.34839 6.60651 6.66263 6.70330 6.88689 7.07871 7.09515 7.12958 7.21803 7.58604 7.60233 7.62790 7.86546 8.22800 8.69682 8.79486 9.17084 9.57956 11.01015 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.005234 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.305712 B = 5348.343009 C = 7289.515890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.457 3.543 5 O -0.507 6.507 6 C -0.100 4.100 7 C 0.232 3.768 8 H 0.009 0.991 9 C -0.560 4.560 10 H 0.058 0.942 11 C 0.087 3.913 12 N -0.856 5.856 13 Si 0.887 3.113 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.274 1.274 17 O -0.345 6.345 18 C 0.085 3.915 19 C 0.064 3.936 20 N -0.518 5.518 21 C 0.060 3.940 22 C 0.059 3.941 23 N -0.547 5.547 24 C 0.027 3.973 25 C 0.061 3.939 26 C 0.063 3.937 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.025 0.975 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.046 0.954 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -12.267 2.337 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.302 3.698 5 O -0.394 6.394 6 C -0.137 4.137 7 C 0.176 3.824 8 H 0.027 0.973 9 C -0.597 4.597 10 H 0.076 0.924 11 C -0.119 4.119 12 N -0.492 5.492 13 Si 0.714 3.286 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.199 1.199 17 O -0.263 6.263 18 C 0.006 3.994 19 C -0.063 4.063 20 N -0.243 5.243 21 C -0.069 4.069 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.122 4.122 25 C -0.067 4.067 26 C -0.065 4.065 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.122 -12.494 2.684 13.155 hybrid contribution 0.475 0.775 -0.235 0.939 sum -2.647 -11.718 2.449 12.261 Atomic orbital electron populations 1.21774 0.93602 1.02106 1.03239 1.22757 0.94587 0.82235 1.01666 1.86592 1.26751 1.30533 1.85055 1.24945 0.79131 0.94496 0.71263 1.90557 1.59996 1.43466 1.45351 1.21858 0.98035 0.87687 1.06156 1.19250 0.87816 0.91642 0.83722 0.97304 1.21504 1.32366 0.96045 1.09817 0.92418 1.24975 0.94093 0.98252 0.94612 1.69905 1.34759 1.33580 1.10939 0.86703 0.79693 0.84749 0.77421 1.20543 1.21142 1.19922 1.88065 1.36741 1.68114 1.33376 1.21979 0.89888 0.93499 0.94006 1.22117 0.91073 0.94242 0.98889 1.61988 1.50073 1.08728 1.03470 1.22123 0.96817 0.98316 0.89623 1.22145 0.98465 0.89039 0.97297 1.62209 1.48871 1.10354 1.05803 1.22311 0.93106 0.95735 1.01041 1.22113 0.99041 0.98227 0.87345 1.22107 0.96112 0.89125 0.99197 0.91694 0.91787 0.91064 0.92192 0.92061 0.84698 0.89353 0.92835 0.95666 0.94628 0.94909 0.90406 0.94978 0.90284 0.93854 0.90902 0.91678 0.91695 0.95735 0.93616 0.91050 0.89926 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.29 37.16 0.38 -1.35 16 2 C 0.06 0.96 6.19 37.16 0.23 1.19 16 3 O -0.37 -7.22 10.22 -39.25 -0.40 -7.62 16 4 C 0.46 10.11 7.84 36.01 0.28 10.39 16 5 O -0.51 -11.82 15.17 -24.06 -0.36 -12.19 16 6 C -0.10 -2.35 5.22 -27.88 -0.15 -2.50 16 7 C 0.23 5.89 1.82 -27.88 -0.05 5.83 16 8 H 0.01 0.23 7.60 -51.93 -0.39 -0.17 16 9 C -0.56 -14.95 8.90 -34.44 -0.31 -15.25 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.09 2.30 5.24 -17.82 -0.09 2.21 16 12 N -0.86 -23.42 10.92 55.43 0.61 -22.82 16 13 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 O -0.34 -8.76 8.57 -49.66 -0.43 -9.18 16 18 C 0.08 1.84 5.93 37.16 0.22 2.06 16 19 C 0.06 1.20 5.39 -3.82 -0.02 1.18 16 20 N -0.52 -9.42 4.59 -234.47 -1.08 -10.50 16 21 C 0.06 0.94 5.57 -3.76 -0.02 0.92 16 22 C 0.06 0.84 5.62 -3.77 -0.02 0.82 16 23 N -0.55 -7.65 4.97 -242.76 -1.21 -8.85 16 24 C 0.03 0.30 9.60 60.07 0.58 0.87 16 25 C 0.06 0.91 5.62 -3.77 -0.02 0.89 16 26 C 0.06 1.04 5.43 -3.77 -0.02 1.02 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.14 3.49 6.21 -51.93 -0.32 3.17 16 33 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.54 7.99 -51.93 -0.42 0.12 16 38 H 0.08 1.52 7.84 -51.93 -0.41 1.11 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 1.46 6.72 -51.93 -0.35 1.12 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -29.86 391.35 -9.96 -39.82 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.96 Total: 1.73 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 0.99 Total: 8.28 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -1.68 Total: -42.17 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.19 Total: -28.99 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.86 -9.96 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224551954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.522 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds