Wall clock time and date at job start Tue Mar 31 2020 10:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47058 * 2 1 4 4 C 1.34229 * 116.99692 * 179.97438 * 3 2 1 5 5 O 1.20834 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99956 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47043 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47261 * 55.00060 * 7 6 4 9 9 C 1.50699 * 109.47078 * 174.99981 * 7 6 4 10 10 H 1.07995 * 120.00240 * 240.00084 * 9 7 6 11 11 C 1.37887 * 119.99701 * 59.72418 * 9 7 6 12 12 N 1.31511 * 120.00137 * 0.27623 * 11 9 7 13 13 Si 1.86797 * 119.99617 * 180.27516 * 11 9 7 14 14 H 1.48499 * 109.47252 * 90.00469 * 13 11 9 15 15 H 1.48500 * 109.46859 * 209.99893 * 13 11 9 16 16 H 1.48496 * 109.47493 * 330.00069 * 13 11 9 17 17 O 1.42902 * 109.47144 * 295.00218 * 7 6 4 18 18 C 1.42901 * 113.99847 * 150.00305 * 17 7 6 19 19 C 1.53004 * 109.47084 * 179.97438 * 18 17 7 20 20 N 1.46902 * 109.47181 * 65.15365 * 19 18 17 21 21 C 1.46961 * 111.00029 * 199.60121 * 20 19 18 22 22 C 1.53053 * 109.35944 * 176.81283 * 21 20 19 23 23 N 1.46956 * 109.36771 * 58.39949 * 22 21 20 24 24 C 1.46902 * 110.99931 * 176.80737 * 23 22 21 25 25 C 1.46953 * 110.87990 * 300.68049 * 23 22 21 26 26 C 1.46956 * 110.99931 * 75.79896 * 20 19 18 27 27 H 1.09003 * 109.46989 * 300.00874 * 1 2 3 28 28 H 1.09006 * 109.46741 * 59.99890 * 1 2 3 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47135 * 239.99477 * 2 1 3 31 31 H 1.09004 * 109.46778 * 119.99559 * 2 1 3 32 32 H 1.08998 * 109.46846 * 59.99910 * 6 4 3 33 33 H 1.09000 * 109.46861 * 299.99971 * 6 4 3 34 34 H 0.96995 * 120.00172 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47226 * 299.99720 * 18 17 7 36 36 H 1.08998 * 109.47581 * 59.99974 * 18 17 7 37 37 H 1.08997 * 109.47441 * 185.15777 * 19 18 17 38 38 H 1.09002 * 109.46831 * 305.15926 * 19 18 17 39 39 H 1.08995 * 109.48393 * 296.77546 * 21 20 19 40 40 H 1.08996 * 109.48818 * 56.84465 * 21 20 19 41 41 H 1.09001 * 109.49212 * 298.42643 * 22 21 20 42 42 H 1.09001 * 109.50159 * 178.37638 * 22 21 20 43 43 H 1.08996 * 109.46753 * 183.80248 * 24 23 22 44 44 H 1.08997 * 109.46963 * 303.80144 * 24 23 22 45 45 H 1.08996 * 109.47022 * 63.80027 * 24 23 22 46 46 H 1.09002 * 109.48555 * 299.34693 * 25 23 22 47 47 H 1.08995 * 109.48888 * 179.29063 * 25 23 22 48 48 H 1.09004 * 109.48570 * 303.15758 * 26 20 19 49 49 H 1.08995 * 109.48487 * 63.22273 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8573 0.0014 8 1 5.7814 2.2490 -0.8396 9 6 6.0246 4.2443 -0.1230 10 1 6.6601 4.4921 -0.9602 11 6 5.7354 5.1987 0.8293 12 7 4.9616 4.8970 1.8489 13 14 6.4431 6.9202 0.6710 14 1 5.5069 7.7706 -0.1071 15 1 6.6337 7.5033 2.0234 16 1 7.7511 6.8554 -0.0290 17 8 5.8935 2.2646 1.2233 18 6 7.1167 1.5356 1.1041 19 6 7.4954 0.9487 2.4655 20 7 6.4914 -0.0460 2.8662 21 6 6.5400 -0.2892 4.3148 22 6 5.4295 -1.2686 4.7023 23 7 5.6021 -2.5219 3.9546 24 6 4.5981 -3.5166 4.3554 25 6 5.5536 -2.2786 2.5062 26 6 6.6640 -1.2993 2.1185 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5844 3.4700 0.8895 33 1 3.5853 3.4690 -0.8905 34 1 4.7585 5.5683 2.5189 35 1 6.9899 0.7285 0.3827 36 1 7.9072 2.2051 0.7650 37 1 8.4726 0.4710 2.3961 38 1 7.5327 1.7464 3.2073 39 1 7.5082 -0.7139 4.5798 40 1 6.3972 0.6515 4.8464 41 1 4.4598 -0.8325 4.4622 42 1 5.4814 -1.4730 5.7717 43 1 4.7900 -4.4558 3.8366 44 1 4.6558 -3.6776 5.4318 45 1 3.6037 -3.1542 4.0950 46 1 4.5853 -1.8540 2.2410 47 1 5.6963 -3.2193 1.9744 48 1 6.6117 -1.0949 1.0491 49 1 7.6336 -1.7353 2.3588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224551954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:04 Heat of formation + Delta-G solvation = -137.582368 kcal Electronic energy + Delta-G solvation = -28564.980831 eV Core-core repulsion = 24719.816313 eV Total energy + Delta-G solvation = -3845.164518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24664 -40.26273 -38.54830 -37.29779 -36.41863 -34.67480 -32.81250 -32.05941 -31.85723 -30.60059 -28.00854 -27.74032 -24.85498 -24.55844 -24.35997 -23.16992 -22.37174 -21.41898 -20.73785 -18.85148 -18.23452 -17.64639 -17.40825 -17.10879 -16.70106 -16.40317 -16.11861 -15.98718 -15.79507 -15.47971 -15.39215 -15.01397 -14.73280 -14.55589 -13.96909 -13.82234 -13.58647 -13.45330 -13.38920 -13.03997 -12.92903 -12.80390 -12.78048 -12.60633 -12.49109 -12.40638 -12.33087 -12.26812 -12.18449 -11.83890 -11.59407 -11.49639 -11.42926 -11.22271 -10.91994 -10.57427 -9.66149 -9.42889 -9.08194 -8.02878 -6.29207 1.44636 1.47121 1.49628 1.56172 1.95849 2.46066 2.92247 2.99022 3.14630 3.53909 3.90261 4.01691 4.06566 4.06866 4.10198 4.19358 4.26074 4.32658 4.36119 4.44475 4.47015 4.55638 4.60072 4.62025 4.67103 4.68674 4.75382 4.81526 4.83670 4.88918 4.92665 4.94620 4.96927 5.03320 5.08377 5.11971 5.15783 5.21832 5.52352 5.64672 5.82218 5.94757 5.99072 6.19043 6.24730 6.28176 6.66971 7.04118 7.22033 7.52659 8.97276 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.005234 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.305712 B = 5348.343009 C = 7289.515890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.463 3.537 5 O -0.523 6.523 6 C -0.095 4.095 7 C 0.232 3.768 8 H -0.002 1.002 9 C -0.580 4.580 10 H 0.052 0.948 11 C 0.049 3.951 12 N -0.879 5.879 13 Si 0.949 3.051 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.274 1.274 17 O -0.363 6.363 18 C 0.083 3.917 19 C 0.074 3.926 20 N -0.544 5.544 21 C 0.061 3.939 22 C 0.063 3.937 23 N -0.548 5.548 24 C 0.026 3.974 25 C 0.068 3.932 26 C 0.067 3.933 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.263 0.737 35 H 0.022 0.978 36 H 0.027 0.973 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.019 0.981 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 -13.386 2.964 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.291 6.291 4 C 0.307 3.693 5 O -0.412 6.412 6 C -0.133 4.133 7 C 0.175 3.825 8 H 0.016 0.984 9 C -0.617 4.617 10 H 0.070 0.930 11 C -0.155 4.155 12 N -0.515 5.515 13 Si 0.775 3.225 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.198 1.198 17 O -0.282 6.282 18 C 0.005 3.995 19 C -0.053 4.053 20 N -0.269 5.269 21 C -0.067 4.067 22 C -0.065 4.065 23 N -0.273 5.273 24 C -0.122 4.122 25 C -0.060 4.060 26 C -0.061 4.061 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.477 -13.628 3.309 14.448 hybrid contribution 0.534 1.027 -0.441 1.238 sum -2.944 -12.601 2.868 13.254 Atomic orbital electron populations 1.21801 0.90155 1.04314 1.03570 1.23157 0.97222 0.79967 1.01612 1.86551 1.24897 1.33255 1.84432 1.24502 0.80076 0.93613 0.71070 1.90545 1.60691 1.43752 1.46168 1.21630 0.97280 0.88794 1.05574 1.19207 0.88822 0.91013 0.83419 0.98428 1.21703 1.32878 0.97074 1.10066 0.92970 1.25594 0.94241 1.01553 0.94129 1.70033 1.35435 1.34644 1.11405 0.85721 0.79016 0.80434 0.77341 1.19581 1.20975 1.19842 1.88027 1.38189 1.68540 1.33467 1.22111 0.88395 0.92943 0.96052 1.21957 0.92458 0.94346 0.96574 1.61911 1.50332 1.09490 1.05166 1.22139 0.98013 0.98577 0.87957 1.22129 0.96585 0.88966 0.98831 1.62260 1.49877 1.10356 1.04802 1.22407 0.92012 0.95366 1.02396 1.22028 0.96896 0.98524 0.88599 1.22050 0.97341 0.88823 0.97889 0.91761 0.91046 0.87867 0.91608 0.92846 0.86850 0.88319 0.92800 0.95977 0.95460 0.92278 0.91576 0.93673 0.90983 0.96236 0.88232 0.90152 0.89889 0.96313 0.96502 0.88935 0.91903 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.29 71.98 0.74 -2.23 16 2 C 0.05 1.63 6.19 71.98 0.45 2.08 16 3 O -0.37 -14.56 10.22 -51.40 -0.53 -15.09 16 4 C 0.46 20.92 7.84 71.24 0.56 21.47 16 5 O -0.52 -25.06 15.17 27.01 0.41 -24.65 16 6 C -0.09 -4.62 5.22 29.85 0.16 -4.46 16 7 C 0.23 12.16 1.82 29.85 0.05 12.21 16 8 H 0.00 -0.12 7.60 -2.39 -0.02 -0.14 16 9 C -0.58 -31.64 8.90 25.60 0.23 -31.42 16 10 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 11 C 0.05 2.62 5.24 84.66 0.44 3.07 16 12 N -0.88 -48.88 10.92 21.45 0.23 -48.65 16 13 Si 0.95 42.17 29.54 68.60 2.03 44.20 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 O -0.36 -19.11 8.57 -135.18 -1.16 -20.27 16 18 C 0.08 3.72 5.93 71.98 0.43 4.14 16 19 C 0.07 2.80 5.39 86.30 0.46 3.26 16 20 N -0.54 -19.85 4.59 -895.71 -4.11 -23.96 16 21 C 0.06 1.88 5.57 86.31 0.48 2.36 16 22 C 0.06 1.74 5.62 86.31 0.49 2.23 16 23 N -0.55 -14.30 4.97 -921.97 -4.58 -18.88 16 24 C 0.03 0.52 9.60 127.69 1.23 1.75 16 25 C 0.07 1.99 5.62 86.31 0.49 2.47 16 26 C 0.07 2.18 5.43 86.31 0.47 2.65 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 32 H 0.11 6.08 6.21 -2.39 -0.01 6.06 16 33 H 0.10 4.45 8.14 -2.39 -0.02 4.43 16 34 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.02 1.00 6.68 -2.39 -0.02 0.98 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.89 7.99 -2.39 -0.02 1.87 16 38 H 0.07 2.62 7.84 -2.39 -0.02 2.60 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 2.28 8.00 -2.39 -0.02 2.26 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 2.20 8.13 -2.39 -0.02 2.18 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 45 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.06 2.27 6.72 -2.38 -0.02 2.25 16 49 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -64.98 391.35 -0.15 -65.13 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.89 Total: 22.59 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.66 Total: 19.58 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -8.46 Total: -91.49 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -1.27 Total: -60.00 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -64.98 -0.15 -65.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224551954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.457 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds