Wall clock time and date at job start Tue Mar 31 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47247 * 2 1 4 4 C 1.52998 * 109.47247 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47247 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47247 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47247 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46813 * 54.99923 * 7 6 5 9 9 F 1.39901 * 109.47325 * 294.99920 * 7 6 5 10 10 C 1.50704 * 109.47029 * 175.00154 * 7 6 5 11 11 O 1.21273 * 120.00329 * 45.00086 * 10 7 6 12 12 N 1.34781 * 119.99675 * 225.00289 * 10 7 6 13 13 C 1.46499 * 119.99981 * 179.97438 * 12 10 7 14 14 C 1.53081 * 109.45080 * 84.78441 * 13 12 10 15 15 C 1.53190 * 109.29209 * 181.24433 * 14 13 12 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.46006 * 204.99622 * 13 12 10 27 27 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47029 * 300.00273 * 1 2 3 29 29 H 1.08998 * 109.47062 * 59.99939 * 1 2 3 30 30 H 1.09000 * 109.47029 * 239.99727 * 2 1 3 31 31 H 1.08998 * 109.47062 * 120.00061 * 2 1 3 32 32 H 1.09000 * 109.47328 * 59.99910 * 3 2 1 33 33 H 1.08998 * 109.47139 * 300.00014 * 3 2 1 34 34 H 1.09000 * 109.47029 * 59.99727 * 4 3 2 35 35 H 1.08998 * 109.47062 * 300.00061 * 4 3 2 36 36 H 1.09004 * 109.46921 * 60.00165 * 5 4 3 37 37 H 1.08998 * 109.47139 * 300.00014 * 5 4 3 38 38 H 1.09000 * 109.47029 * 59.99727 * 6 5 4 39 39 H 1.08998 * 109.47062 * 300.00061 * 6 5 4 40 40 H 0.96997 * 119.99900 * 359.97438 * 12 10 7 41 41 H 1.08996 * 109.45705 * 324.97360 * 13 12 10 42 42 H 1.08992 * 109.38800 * 61.36852 * 14 13 12 43 43 H 1.09002 * 109.61927 * 301.26130 * 14 13 12 44 44 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 45 45 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 46 46 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 48 48 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 49 49 H 1.09002 * 109.49848 * 58.66419 * 26 13 12 50 50 H 1.08999 * 109.49849 * 298.56228 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3274 0.0013 8 1 5.6847 4.8667 0.8426 9 9 5.7510 4.9526 -1.1946 10 6 7.6219 4.3292 0.1264 11 8 8.2869 3.5659 -0.5413 12 7 8.2259 5.1792 0.9803 13 6 9.6858 5.1806 1.1023 14 6 10.2876 6.0716 0.0127 15 6 11.8152 6.0458 0.1242 16 7 12.1987 6.4188 1.4925 17 6 13.0909 7.4336 1.7151 18 1 13.0499 7.9965 2.6359 19 6 14.0480 7.7387 0.7571 20 7 14.6257 8.9214 0.7573 21 14 14.5161 6.4709 -0.5325 22 1 13.6847 6.6697 -1.7467 23 1 15.9505 6.6281 -0.8834 24 1 14.2853 5.1069 0.0077 25 6 11.6072 5.6821 2.6177 26 6 10.0817 5.7145 2.4808 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8908 36 1 3.7163 3.3993 0.8896 37 1 3.7171 3.3983 -0.8904 38 1 5.9741 2.3704 -0.8880 39 1 5.9726 2.3718 0.8919 40 1 7.6940 5.7900 1.5140 41 1 10.0609 4.1640 0.9851 42 1 9.9305 7.0932 0.1425 43 1 9.9881 5.7029 -0.9684 44 1 12.2452 6.7559 -0.5822 45 1 12.1809 5.0432 -0.0973 46 1 15.2943 9.1347 0.0877 47 1 11.9537 4.6487 2.6004 48 1 11.9019 6.1507 3.5567 49 1 9.6336 5.0913 3.2548 50 1 9.7285 6.7400 2.5890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230048816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:48 Heat of formation + Delta-G solvation = -100.821083 kcal Electronic energy + Delta-G solvation = -26325.703044 eV Core-core repulsion = 22494.505404 eV Total energy + Delta-G solvation = -3831.197640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.05054 -39.86705 -37.73306 -36.98730 -34.71018 -34.32128 -32.29821 -31.00687 -30.44933 -29.99699 -27.17729 -25.04831 -23.56040 -22.89485 -21.94225 -21.43821 -21.25185 -20.51054 -19.66460 -17.71619 -17.20451 -16.77520 -16.26548 -16.01218 -15.64536 -15.09864 -14.70117 -14.44092 -14.38356 -14.21731 -14.15932 -13.79930 -13.58327 -13.19301 -13.12504 -12.95861 -12.80627 -12.52437 -12.36061 -12.08364 -11.97372 -11.83494 -11.77437 -11.43997 -11.30173 -11.11710 -11.09182 -10.87805 -10.85821 -10.83484 -10.64992 -10.19044 -10.11432 -10.00490 -9.64992 -9.51816 -8.93889 -8.63112 -7.01782 -5.96476 -3.32917 2.37042 2.92037 3.34436 3.49983 3.53268 4.10273 4.22620 4.37892 4.44803 4.52425 4.53070 4.63127 4.66216 4.86534 4.92164 4.94958 5.07299 5.11945 5.19097 5.25770 5.31036 5.37598 5.41623 5.43445 5.49590 5.56227 5.59409 5.66016 5.72141 5.76824 5.77717 5.87767 5.97342 5.98191 6.00881 6.02453 6.09212 6.24954 6.37346 6.52216 6.58530 6.63943 6.65559 6.87453 7.39424 7.93671 8.05555 8.30645 8.91402 9.70253 10.07229 11.19222 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.002089 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.355886 B =13399.521030 C =13578.428189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.083 3.917 8 H 0.098 0.902 9 F -0.191 7.191 10 C 0.488 3.512 11 O -0.521 6.521 12 N -0.715 5.715 13 C 0.148 3.852 14 C -0.141 4.141 15 C 0.128 3.872 16 N -0.606 5.606 17 C -0.263 4.263 18 H 0.086 0.914 19 C 0.025 3.975 20 N -0.907 5.907 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.270 1.270 25 C 0.152 3.848 26 C -0.140 4.140 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.399 0.601 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.266 -13.901 1.724 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.174 4.174 7 C 0.044 3.956 8 H 0.115 0.885 9 F -0.171 7.171 10 C 0.271 3.729 11 O -0.396 6.396 12 N -0.365 5.365 13 C 0.045 3.955 14 C -0.182 4.182 15 C 0.002 3.998 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.104 0.896 19 C -0.174 4.174 20 N -0.550 5.550 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C 0.025 3.975 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.233 0.767 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.626 -14.319 1.162 29.378 hybrid contribution 0.068 -0.177 -0.652 0.679 sum -25.558 -14.496 0.510 29.387 Atomic orbital electron populations 1.21781 0.95962 1.01550 1.01791 1.21546 0.95808 0.97009 1.02040 1.21627 0.95318 0.96745 1.02128 1.21588 0.95390 0.96361 1.02389 1.21606 0.93863 0.97579 1.02746 1.22063 0.96587 0.93647 1.05137 1.21632 0.92461 0.96078 0.85461 0.88456 1.92885 1.92074 1.83920 1.48259 1.20930 0.90096 0.81185 0.80657 1.90738 1.66005 1.39539 1.43353 1.46371 1.08965 1.38686 1.42526 1.21083 0.77354 1.00723 0.96350 1.22400 0.98504 0.99682 0.97583 1.21315 0.91759 0.98551 0.88139 1.44393 1.49854 1.39107 0.99602 1.18907 1.07410 1.06722 1.06030 0.89620 1.25271 0.97158 0.96631 0.98359 1.69836 1.29605 1.19209 1.36353 0.86979 0.76629 0.83564 0.81669 1.21564 1.23063 1.19503 1.20862 0.89254 0.95232 0.92160 1.22337 1.00070 1.01157 0.94443 0.92855 0.92792 0.92766 0.92042 0.92071 0.92009 0.91945 0.91748 0.91847 0.91650 0.91174 0.89386 0.89790 0.76685 0.89765 0.91510 0.92306 0.90657 0.95465 0.92735 0.95700 0.91260 0.92056 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 4 C -0.12 -0.76 5.21 -26.73 -0.14 -0.90 16 5 C -0.12 -0.83 5.13 -26.73 -0.14 -0.97 16 6 C -0.14 -1.18 4.69 -26.73 -0.13 -1.31 16 7 C 0.08 0.83 3.77 -27.88 -0.11 0.72 16 8 H 0.10 0.64 8.00 -51.93 -0.42 0.22 16 9 F -0.19 -2.36 16.75 2.25 0.04 -2.32 16 10 C 0.49 6.60 7.13 -10.98 -0.08 6.53 16 11 O -0.52 -9.24 16.27 5.56 0.09 -9.15 16 12 N -0.71 -8.92 5.08 -53.75 -0.27 -9.19 16 13 C 0.15 2.33 2.41 -67.87 -0.16 2.17 16 14 C -0.14 -2.64 5.66 -26.59 -0.15 -2.79 16 15 C 0.13 2.88 4.20 -3.71 -0.02 2.86 16 16 N -0.61 -14.20 2.77 -172.32 -0.48 -14.68 16 17 C -0.26 -7.26 10.03 -15.06 -0.15 -7.42 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 20 N -0.91 -27.79 13.97 55.49 0.78 -27.01 16 21 Si 0.88 22.72 24.34 -169.99 -4.14 18.58 16 22 H -0.29 -7.25 6.62 56.52 0.37 -6.88 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.27 -6.87 6.64 56.52 0.38 -6.50 16 25 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 26 C -0.14 -2.08 5.55 -26.61 -0.15 -2.23 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 38 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 3.68 8.49 -40.82 -0.35 3.34 16 41 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.85 4.50 -51.93 -0.23 1.62 16 45 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -32.77 392.33 -8.71 -41.47 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -9.37 Total: -1.61 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.26 Total: -2.00 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.02 Total: -50.88 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.77 -8.71 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230048816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.349 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds