Wall clock time and date at job start Tue Mar 31 2020 11:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47247 * 2 1 4 4 C 1.52998 * 109.47247 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47247 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47247 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47247 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46813 * 54.99923 * 7 6 5 9 9 F 1.39901 * 109.47325 * 294.99920 * 7 6 5 10 10 C 1.50704 * 109.47029 * 175.00154 * 7 6 5 11 11 O 1.21273 * 120.00329 * 45.00086 * 10 7 6 12 12 N 1.34781 * 119.99675 * 225.00289 * 10 7 6 13 13 C 1.46499 * 119.99981 * 179.97438 * 12 10 7 14 14 C 1.53081 * 109.45080 * 84.78441 * 13 12 10 15 15 C 1.53190 * 109.29209 * 181.24433 * 14 13 12 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.46006 * 204.99622 * 13 12 10 27 27 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47029 * 300.00273 * 1 2 3 29 29 H 1.08998 * 109.47062 * 59.99939 * 1 2 3 30 30 H 1.09000 * 109.47029 * 239.99727 * 2 1 3 31 31 H 1.08998 * 109.47062 * 120.00061 * 2 1 3 32 32 H 1.09000 * 109.47328 * 59.99910 * 3 2 1 33 33 H 1.08998 * 109.47139 * 300.00014 * 3 2 1 34 34 H 1.09000 * 109.47029 * 59.99727 * 4 3 2 35 35 H 1.08998 * 109.47062 * 300.00061 * 4 3 2 36 36 H 1.09004 * 109.46921 * 60.00165 * 5 4 3 37 37 H 1.08998 * 109.47139 * 300.00014 * 5 4 3 38 38 H 1.09000 * 109.47029 * 59.99727 * 6 5 4 39 39 H 1.08998 * 109.47062 * 300.00061 * 6 5 4 40 40 H 0.96997 * 119.99900 * 359.97438 * 12 10 7 41 41 H 1.08996 * 109.45705 * 324.97360 * 13 12 10 42 42 H 1.08992 * 109.38800 * 61.36852 * 14 13 12 43 43 H 1.09002 * 109.61927 * 301.26130 * 14 13 12 44 44 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 45 45 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 46 46 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 48 48 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 49 49 H 1.09002 * 109.49848 * 58.66419 * 26 13 12 50 50 H 1.08999 * 109.49849 * 298.56228 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3274 0.0013 8 1 5.6847 4.8667 0.8426 9 9 5.7510 4.9526 -1.1946 10 6 7.6219 4.3292 0.1264 11 8 8.2869 3.5659 -0.5413 12 7 8.2259 5.1792 0.9803 13 6 9.6858 5.1806 1.1023 14 6 10.2876 6.0716 0.0127 15 6 11.8152 6.0458 0.1242 16 7 12.1987 6.4188 1.4925 17 6 13.0909 7.4336 1.7151 18 1 13.0499 7.9965 2.6359 19 6 14.0480 7.7387 0.7571 20 7 14.6257 8.9214 0.7573 21 14 14.5161 6.4709 -0.5325 22 1 13.6847 6.6697 -1.7467 23 1 15.9505 6.6281 -0.8834 24 1 14.2853 5.1069 0.0077 25 6 11.6072 5.6821 2.6177 26 6 10.0817 5.7145 2.4808 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8908 36 1 3.7163 3.3993 0.8896 37 1 3.7171 3.3983 -0.8904 38 1 5.9741 2.3704 -0.8880 39 1 5.9726 2.3718 0.8919 40 1 7.6940 5.7900 1.5140 41 1 10.0609 4.1640 0.9851 42 1 9.9305 7.0932 0.1425 43 1 9.9881 5.7029 -0.9684 44 1 12.2452 6.7559 -0.5822 45 1 12.1809 5.0432 -0.0973 46 1 15.2943 9.1347 0.0877 47 1 11.9537 4.6487 2.6004 48 1 11.9019 6.1507 3.5567 49 1 9.6336 5.0913 3.2548 50 1 9.7285 6.7400 2.5890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230048816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:47 Heat of formation + Delta-G solvation = -120.973798 kcal Electronic energy + Delta-G solvation = -26326.576931 eV Core-core repulsion = 22494.505404 eV Total energy + Delta-G solvation = -3832.071527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.93160 -41.04443 -39.21446 -37.51745 -36.17769 -34.90922 -34.11908 -32.21194 -31.99875 -31.09338 -28.00558 -26.60770 -24.55071 -24.40923 -23.32138 -21.95895 -21.86734 -21.60282 -21.07537 -19.01584 -18.51978 -18.07320 -17.39159 -16.89708 -16.74298 -16.30361 -15.99199 -15.71562 -15.53250 -15.38669 -15.16978 -14.80180 -14.71405 -14.53658 -14.17871 -14.13980 -13.90326 -13.81425 -13.47828 -13.40227 -13.14258 -12.74975 -12.64600 -12.55862 -12.28926 -12.25317 -12.09495 -12.01025 -11.80276 -11.78439 -11.58203 -11.52045 -11.49048 -11.40323 -11.32084 -10.87813 -10.69553 -10.16036 -8.98743 -8.19181 -5.50304 1.27147 1.31173 1.37807 1.45775 1.90459 2.38481 3.01991 3.29259 3.38747 3.45839 3.68775 3.76642 3.82266 3.90981 4.01791 4.09438 4.18382 4.19107 4.28098 4.35459 4.42141 4.44438 4.60619 4.64637 4.65725 4.66676 4.80411 4.82410 4.90593 4.91963 4.95516 4.97170 4.98706 5.07041 5.10307 5.12399 5.17182 5.25974 5.28418 5.36764 5.41005 5.43087 5.50441 5.55096 5.85108 6.11312 6.39999 6.88592 7.06248 7.59465 8.00703 9.00322 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.002089 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.355886 B =13399.521030 C =13578.428189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.087 3.913 8 H 0.144 0.856 9 F -0.205 7.205 10 C 0.485 3.515 11 O -0.568 6.568 12 N -0.700 5.700 13 C 0.157 3.843 14 C -0.132 4.132 15 C 0.125 3.875 16 N -0.618 5.618 17 C -0.245 4.245 18 H 0.063 0.937 19 C -0.030 4.030 20 N -0.953 5.953 21 Si 0.936 3.064 22 H -0.283 1.283 23 H -0.308 1.308 24 H -0.265 1.265 25 C 0.142 3.858 26 C -0.124 4.124 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.419 0.581 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.026 0.974 46 H 0.261 0.739 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.992 -15.102 2.981 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.048 3.952 8 H 0.162 0.838 9 F -0.186 7.186 10 C 0.270 3.730 11 O -0.446 6.446 12 N -0.351 5.351 13 C 0.052 3.948 14 C -0.172 4.172 15 C 0.000 4.000 16 N -0.343 5.343 17 C -0.374 4.374 18 H 0.080 0.920 19 C -0.225 4.225 20 N -0.599 5.599 21 Si 0.766 3.234 22 H -0.210 1.210 23 H -0.237 1.237 24 H -0.189 1.189 25 C 0.017 3.983 26 C -0.163 4.163 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.257 0.743 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.089 0.911 49 H 0.120 0.880 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.419 -15.539 2.448 32.482 hybrid contribution 0.868 0.177 -0.981 1.322 sum -27.551 -15.362 1.467 31.579 Atomic orbital electron populations 1.21784 0.95608 1.01798 1.01918 1.21556 0.96149 0.96930 1.01911 1.21601 0.94824 0.96845 1.02281 1.21572 0.95784 0.96100 1.02170 1.21568 0.92353 0.97924 1.03307 1.22054 0.97787 0.92744 1.04541 1.21848 0.89760 0.97412 0.86202 0.83847 1.92861 1.91913 1.84248 1.49552 1.21627 0.91620 0.80170 0.79595 1.90725 1.67425 1.41411 1.45082 1.46113 1.07631 1.38826 1.42552 1.20772 0.79184 0.99151 0.95706 1.22240 0.95855 1.00411 0.98725 1.21257 0.94279 0.97404 0.87091 1.44523 1.49525 1.38950 1.01317 1.18920 1.07242 1.06747 1.04536 0.91964 1.25812 0.97955 0.97930 1.00829 1.69944 1.31113 1.20912 1.37951 0.86076 0.75780 0.81595 0.79928 1.21025 1.23705 1.18926 1.21130 0.91769 0.94918 0.90497 1.22157 0.96935 1.02329 0.94902 0.92595 0.92454 0.92845 0.92505 0.91903 0.91327 0.92278 0.92757 0.91346 0.89650 0.91981 0.91826 0.88671 0.74286 0.91074 0.91613 0.92810 0.93316 0.95657 0.92987 0.94805 0.91076 0.87984 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.13 -1.24 5.93 30.59 0.18 -1.06 16 3 C -0.12 -1.15 5.21 30.59 0.16 -0.99 16 4 C -0.12 -1.29 5.21 30.59 0.16 -1.13 16 5 C -0.11 -1.27 5.13 30.59 0.16 -1.12 16 6 C -0.13 -2.01 4.69 30.59 0.14 -1.87 16 7 C 0.09 1.46 3.77 29.85 0.11 1.57 16 8 H 0.14 1.13 8.00 -2.39 -0.02 1.11 16 9 F -0.20 -4.64 16.75 44.97 0.75 -3.89 16 10 C 0.49 11.92 7.13 87.66 0.63 12.55 16 11 O -0.57 -19.56 16.27 -3.01 -0.05 -19.61 16 12 N -0.70 -15.03 5.08 -442.35 -2.25 -17.28 16 13 C 0.16 4.50 2.41 45.03 0.11 4.61 16 14 C -0.13 -4.75 5.66 30.68 0.17 -4.58 16 15 C 0.13 5.54 4.20 86.36 0.36 5.90 16 16 N -0.62 -28.50 2.77 -699.09 -1.94 -30.44 16 17 C -0.24 -13.66 10.03 84.03 0.84 -12.81 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 19 C -0.03 -1.77 5.23 84.86 0.44 -1.33 16 20 N -0.95 -59.89 13.97 21.65 0.30 -59.59 16 21 Si 0.94 47.85 24.34 68.60 1.67 49.52 16 22 H -0.28 -14.05 6.62 99.48 0.66 -13.39 16 23 H -0.31 -15.89 7.11 99.48 0.71 -15.19 16 24 H -0.26 -13.09 6.64 99.48 0.66 -12.43 16 25 C 0.14 5.00 6.52 86.37 0.56 5.56 16 26 C -0.12 -3.22 5.55 30.67 0.17 -3.05 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.06 0.81 7.94 -2.39 -0.02 0.79 16 38 H 0.06 1.28 8.05 -2.39 -0.02 1.27 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 5.76 8.49 -92.71 -0.79 4.98 16 41 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 2.40 4.50 -2.39 -0.01 2.39 16 45 H 0.03 1.13 7.07 -2.38 -0.02 1.11 16 46 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 49 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -73.07 392.33 3.42 -69.65 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.01 Total: 10.00 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.92 Total: 1.63 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.88 Total: -107.30 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.75 Total: -3.89 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.67 Total: 49.52 kcal Total: -73.07 3.42 -69.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230048816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.323 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds