Wall clock time and date at job start Tue Mar 31 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47129 * 2 1 4 4 C 1.53006 * 109.46798 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46798 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47129 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47395 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47563 * 305.00100 * 7 6 5 9 9 F 1.39904 * 109.47109 * 65.00165 * 7 6 5 10 10 C 1.50701 * 109.47577 * 185.00144 * 7 6 5 11 11 O 1.21286 * 119.99545 * 315.00466 * 10 7 6 12 12 N 1.34777 * 120.00306 * 134.99931 * 10 7 6 13 13 C 1.46500 * 119.99730 * 180.02562 * 12 10 7 14 14 C 1.53045 * 109.45772 * 154.99987 * 13 12 10 15 15 C 1.53184 * 109.31045 * 181.38140 * 14 13 12 16 16 N 1.46928 * 108.89946 * 305.29664 * 15 14 13 17 17 C 1.36937 * 120.62751 * 233.68087 * 16 15 14 18 18 H 1.07999 * 120.00448 * 27.38666 * 17 16 15 19 19 C 1.38820 * 119.99269 * 207.39032 * 17 16 15 20 20 N 1.31613 * 120.00097 * 17.25596 * 19 17 16 21 21 Si 1.86807 * 119.99669 * 197.25602 * 19 17 16 22 22 H 1.48497 * 109.46957 * 60.00245 * 21 19 17 23 23 H 1.48494 * 109.47182 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47157 * 300.00224 * 21 19 17 25 25 C 1.47200 * 118.55359 * 53.53256 * 16 15 14 26 26 C 1.53036 * 109.45844 * 275.06605 * 13 12 10 27 27 H 1.09003 * 109.47426 * 59.99592 * 1 2 3 28 28 H 1.08994 * 109.47426 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46979 * 300.00002 * 1 2 3 30 30 H 1.08997 * 109.46935 * 239.99595 * 2 1 3 31 31 H 1.09002 * 109.46558 * 120.00123 * 2 1 3 32 32 H 1.08997 * 109.46939 * 60.00427 * 3 2 1 33 33 H 1.08994 * 109.47423 * 299.99885 * 3 2 1 34 34 H 1.08997 * 109.47078 * 60.00450 * 4 3 2 35 35 H 1.08994 * 109.46988 * 300.00089 * 4 3 2 36 36 H 1.09004 * 109.47192 * 60.00065 * 5 4 3 37 37 H 1.08994 * 109.47423 * 299.99822 * 5 4 3 38 38 H 1.09004 * 109.46979 * 59.99998 * 6 5 4 39 39 H 1.08998 * 109.47040 * 300.00691 * 6 5 4 40 40 H 0.96999 * 119.99587 * 0.02562 * 12 10 7 41 41 H 1.08993 * 109.45309 * 35.03494 * 13 12 10 42 42 H 1.09004 * 109.49609 * 61.43436 * 14 13 12 43 43 H 1.09000 * 109.49498 * 301.33269 * 14 13 12 44 44 H 1.09005 * 109.58718 * 65.15681 * 15 14 13 45 45 H 1.09001 * 109.58894 * 185.43430 * 15 14 13 46 46 H 0.97008 * 119.99917 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.53557 * 186.67857 * 25 16 15 48 48 H 1.09002 * 109.67524 * 66.37760 * 25 16 15 49 49 H 1.09007 * 109.49849 * 298.56974 * 26 13 12 50 50 H 1.09005 * 109.50017 * 58.66716 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 6 6.1201 4.3272 0.0000 8 1 5.6856 4.8664 -0.8418 9 9 5.7501 4.9527 1.1955 10 6 7.6220 4.3291 -0.1239 11 8 8.2865 3.5658 0.5446 12 7 8.2268 5.1789 -0.9774 13 6 9.6868 5.1802 -1.0982 14 6 10.0839 5.7137 -2.4766 15 6 11.6094 5.6812 -2.6121 16 7 12.2028 6.4192 -1.4886 17 6 13.0943 7.4339 -1.7137 18 1 13.0517 7.9958 -2.6350 19 6 14.0529 7.7403 -0.7575 20 7 14.3364 6.8734 0.1914 21 14 14.9405 9.3829 -0.8176 22 1 13.9516 10.4844 -0.7000 23 1 15.9076 9.4644 0.3063 24 1 15.6674 9.5058 -2.1066 25 6 11.8153 6.0458 -0.1185 26 6 10.2875 6.0741 -0.0109 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9284 0.8891 36 1 3.7171 3.3982 0.8905 37 1 3.7164 3.3992 -0.8895 38 1 5.9734 2.3714 -0.8902 39 1 5.9734 2.3705 0.8897 40 1 7.6954 5.7895 -1.5118 41 1 10.0617 4.1635 -0.9805 42 1 9.7308 6.7391 -2.5853 43 1 9.6366 5.0902 -3.2506 44 1 11.9560 4.6479 -2.5942 45 1 11.9028 6.1487 -3.5520 46 1 15.0065 7.0873 0.8594 47 1 12.2447 6.7560 0.5881 48 1 12.1789 5.0428 0.1052 49 1 9.9324 7.0962 -0.1429 50 1 9.9850 5.7072 0.9700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230048817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:50 Heat of formation + Delta-G solvation = -106.447141 kcal Electronic energy + Delta-G solvation = -26221.408521 eV Core-core repulsion = 22389.966917 eV Total energy + Delta-G solvation = -3831.441604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.97578 -39.71226 -37.43879 -36.92039 -34.52246 -34.26567 -32.24983 -30.87481 -30.04003 -29.48068 -27.08294 -25.04220 -23.57556 -22.28103 -21.92324 -21.39487 -21.19172 -20.37175 -19.34412 -17.62475 -17.11576 -16.68791 -16.17440 -15.90046 -15.42716 -14.87066 -14.64299 -14.45090 -14.23519 -14.17248 -13.77231 -13.53907 -13.50739 -13.15722 -13.01761 -12.78757 -12.55980 -12.49335 -12.34872 -12.03259 -11.73024 -11.53815 -11.39264 -11.25875 -11.13367 -11.05097 -10.96671 -10.81715 -10.78796 -10.72599 -10.43562 -10.28209 -10.10178 -9.83353 -9.78218 -9.46187 -8.80776 -8.44640 -6.71002 -5.79318 -3.21924 2.48985 3.04416 3.38312 3.44502 3.45184 4.16593 4.30597 4.44254 4.48794 4.51063 4.59028 4.67783 4.70742 4.91298 4.99471 5.12884 5.23782 5.25858 5.35067 5.38130 5.42268 5.45418 5.47969 5.53883 5.58706 5.60360 5.69864 5.75973 5.77338 5.81706 5.92104 6.01951 6.03455 6.05557 6.19366 6.26379 6.37800 6.55376 6.62125 6.74037 6.83574 6.89948 7.34870 7.52438 7.66906 7.78158 8.18360 8.43367 9.19259 9.82855 10.39667 11.29417 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.040970 B = 0.001963 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.261394 B =14263.893774 C =14440.535832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.083 3.917 8 H 0.096 0.904 9 F -0.191 7.191 10 C 0.487 3.513 11 O -0.520 6.520 12 N -0.715 5.715 13 C 0.148 3.852 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.256 4.256 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.173 3.827 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.397 0.603 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.255 0.745 47 H 0.091 0.909 48 H 0.021 0.979 49 H 0.056 0.944 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.032 -9.169 -3.229 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.174 4.174 7 C 0.043 3.957 8 H 0.114 0.886 9 F -0.172 7.172 10 C 0.270 3.730 11 O -0.396 6.396 12 N -0.366 5.366 13 C 0.045 3.955 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.046 3.954 26 C -0.187 4.187 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.230 0.770 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.039 0.961 49 H 0.074 0.926 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.384 -9.692 -2.582 26.366 hybrid contribution 0.197 1.244 -0.146 1.268 sum -24.187 -8.448 -2.727 25.765 Atomic orbital electron populations 1.21782 0.95987 1.01532 1.01775 1.21546 0.95779 0.97027 1.02049 1.21627 0.95357 0.96725 1.02103 1.21589 0.95344 0.96395 1.02404 1.21604 0.93937 0.97540 1.02696 1.22060 0.96499 0.93722 1.05155 1.21635 0.92653 0.95983 0.85383 0.88581 1.92881 1.92070 1.83915 1.48339 1.20897 0.89982 0.81317 0.80807 1.90747 1.66000 1.39526 1.43278 1.46428 1.09213 1.38551 1.42386 1.21130 0.76912 1.00898 0.96530 1.22346 1.00435 1.00594 0.94495 1.20832 0.89175 0.95403 0.92503 1.44145 1.49104 1.38192 1.00053 1.19130 1.07653 1.07386 1.04408 0.91632 1.25048 0.96846 0.98278 0.99378 1.70023 1.33722 1.33220 1.17542 0.86364 0.79129 0.84067 0.77165 1.21054 1.21614 1.20865 1.20812 0.87453 0.99438 0.87664 1.22565 1.00706 0.98497 0.96947 0.92803 0.92867 0.92780 0.92071 0.92031 0.91955 0.92033 0.91847 0.91728 0.91202 0.91693 0.89805 0.89361 0.76954 0.89870 0.91761 0.92562 0.96190 0.92286 0.93490 0.89134 0.96064 0.92559 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 4 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 5 C -0.12 -0.89 5.13 -26.73 -0.14 -1.02 16 6 C -0.14 -1.27 4.69 -26.73 -0.13 -1.40 16 7 C 0.08 0.89 3.77 -27.89 -0.11 0.78 16 8 H 0.10 0.70 7.99 -51.93 -0.42 0.28 16 9 F -0.19 -2.50 16.75 2.25 0.04 -2.46 16 10 C 0.49 7.07 7.13 -10.98 -0.08 7.00 16 11 O -0.52 -9.82 16.27 5.55 0.09 -9.73 16 12 N -0.72 -9.71 5.08 -53.77 -0.27 -9.99 16 13 C 0.15 2.54 2.42 -67.89 -0.16 2.37 16 14 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 15 C 0.15 3.00 6.50 -3.71 -0.02 2.98 16 16 N -0.59 -14.71 3.01 -172.10 -0.52 -15.23 16 17 C -0.26 -6.97 9.59 -15.06 -0.14 -7.12 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -26.34 11.18 55.49 0.62 -25.72 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.17 4.21 5.33 -3.56 -0.02 4.19 16 26 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 40 H 0.40 4.06 8.49 -40.82 -0.35 3.71 16 41 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -31.74 398.78 -9.76 -41.50 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -9.45 Total: -0.13 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.25 Total: -0.86 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.17 Total: -50.94 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.74 -9.76 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230048817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.947 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds