Wall clock time and date at job start Tue Mar 31 2020 10:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47096 * 300.00735 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00320 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50699 * 109.46767 * 66.20188 * 14 13 12 16 16 C 1.37983 * 119.73140 * 259.72853 * 15 14 13 17 17 C 1.38221 * 119.77372 * 179.75483 * 16 15 14 18 18 C 1.37973 * 119.77087 * 0.63241 * 17 16 15 19 19 C 1.38872 * 120.54216 * 359.74567 * 18 17 16 20 20 C 1.37707 * 119.68588 * 359.75614 * 19 18 17 21 21 C 1.50629 * 122.55557 * 180.74603 * 20 19 18 22 22 C 1.52737 * 110.59508 * 342.18673 * 21 20 19 23 23 C 1.53323 * 108.40536 * 51.07346 * 22 21 20 24 24 C 1.50634 * 117.75185 * 179.64750 * 19 18 17 25 25 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 26 26 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 27 27 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 29 29 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 30 30 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 31 31 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 32 32 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 33 33 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 34 34 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 35 35 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 36 36 H 1.08001 * 120.10917 * 0.02562 * 16 15 14 37 37 H 1.07998 * 120.11308 * 180.34978 * 17 16 15 38 38 H 1.08005 * 119.72988 * 179.72900 * 18 17 16 39 39 H 1.08993 * 109.25376 * 102.47351 * 21 20 19 40 40 H 1.08994 * 109.25245 * 221.90616 * 21 20 19 41 41 H 1.09000 * 109.67473 * 291.34492 * 22 21 20 42 42 H 1.09000 * 109.67679 * 170.80652 * 22 21 20 43 43 H 1.08997 * 109.67932 * 170.41521 * 23 22 21 44 44 H 1.09004 * 109.71111 * 49.88260 * 23 22 21 45 45 H 1.08994 * 109.25587 * 282.47201 * 24 19 18 46 46 H 1.08997 * 109.25366 * 41.90923 * 24 19 18 47 47 H 1.09002 * 109.48908 * 180.71202 * 25 13 12 48 48 H 1.09002 * 109.49369 * 60.64073 * 25 13 12 49 49 H 1.08997 * 109.49355 * 296.78047 * 26 10 9 50 50 H 1.09004 * 109.48943 * 56.84596 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5207 -8.4808 -0.9460 16 6 3.3636 -9.1803 0.2330 17 6 2.6683 -10.3749 0.2350 18 6 2.1473 -10.8662 -0.9444 19 6 2.3112 -10.1677 -2.1334 20 6 2.9951 -8.9725 -2.1335 21 6 3.1965 -8.1540 -3.3819 22 6 2.9558 -9.0052 -4.6271 23 6 1.6008 -9.7072 -4.4790 24 6 1.7238 -10.7658 -3.3849 25 6 4.0043 -4.7809 -1.1842 26 6 2.9687 -3.6562 -1.2558 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8897 30 1 0.9734 -4.8433 1.1788 31 1 0.8254 -5.0915 -0.5780 32 1 3.2356 -5.8353 1.1420 33 1 2.0486 -6.9718 0.4571 34 1 4.9008 -7.1180 -1.8359 35 1 4.9009 -7.1180 -0.0559 36 1 3.7788 -8.7934 1.1519 37 1 2.5372 -10.9240 1.1556 38 1 1.6079 -11.8019 -0.9429 39 1 2.4991 -7.3164 -3.3789 40 1 4.2169 -7.7714 -3.4000 41 1 3.7465 -9.7495 -4.7213 42 1 2.9442 -8.3674 -5.5110 43 1 1.3290 -10.1830 -5.4213 44 1 0.8381 -8.9796 -4.2018 45 1 2.3687 -11.5716 -3.7352 46 1 0.7358 -11.1683 -3.1615 47 1 4.5519 -4.8316 -2.1253 48 1 4.6998 -4.5834 -0.3685 49 1 2.2897 -3.8396 -2.0885 50 1 3.4766 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232636815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:09 Heat of formation + Delta-G solvation = 0.669540 kcal Electronic energy + Delta-G solvation = -26686.513600 eV Core-core repulsion = 23290.486149 eV Total energy + Delta-G solvation = -3396.027452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.25363 -39.92752 -37.21215 -36.51951 -34.74704 -33.50514 -31.88550 -31.06113 -30.59209 -29.36997 -27.47888 -25.27256 -24.55020 -24.39201 -23.55517 -23.22838 -21.40397 -20.63001 -20.14830 -18.49891 -17.38973 -17.15552 -16.56270 -16.48696 -16.31560 -15.88703 -15.72027 -15.51251 -15.27300 -15.00538 -14.69260 -14.62114 -14.47164 -14.05184 -13.84301 -13.55271 -13.46417 -13.26024 -13.07440 -12.99078 -12.72911 -12.57480 -12.43207 -12.30034 -12.25986 -12.21209 -12.08827 -11.84583 -11.68991 -11.49895 -11.20942 -11.11512 -11.07989 -10.63656 -9.52963 -9.34707 -9.25640 -9.03737 -8.21621 -6.32320 0.46171 0.55988 1.40634 1.41186 1.55073 2.39554 2.71998 3.10491 3.17555 3.28766 3.73214 3.80039 3.96691 3.99608 4.06950 4.15045 4.19696 4.23254 4.30373 4.35705 4.36614 4.47214 4.49615 4.51970 4.63062 4.66156 4.66559 4.79744 4.82859 4.85468 4.95620 5.00463 5.00567 5.03658 5.05907 5.11225 5.16897 5.20742 5.22547 5.26002 5.27706 5.42228 5.51113 5.62934 5.65708 5.71777 5.87375 6.00294 6.07242 6.09632 6.22427 6.34213 6.60065 6.83867 7.37639 8.90067 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.002895 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.753025 B = 9668.184117 C =10054.941298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.058 3.942 12 C 0.077 3.923 13 N -0.535 5.535 14 C 0.096 3.904 15 C -0.089 4.089 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.093 4.093 20 C -0.066 4.066 21 C -0.075 4.075 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.076 4.076 25 C 0.070 3.930 26 C 0.070 3.930 27 H 0.265 0.735 28 H -0.042 1.042 29 H 0.001 0.999 30 H 0.066 0.934 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.038 0.962 49 H 0.014 0.986 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.325 -24.397 -6.285 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.083 3.917 10 N -0.268 5.268 11 C -0.071 4.071 12 C -0.051 4.051 13 N -0.260 5.260 14 C -0.030 4.030 15 C -0.090 4.090 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.093 4.093 20 C -0.066 4.066 21 C -0.111 4.111 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.113 4.113 25 C -0.057 4.057 26 C -0.058 4.058 27 H 0.073 0.927 28 H -0.024 1.024 29 H 0.019 0.981 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.115 0.885 48 H 0.056 0.944 49 H 0.032 0.968 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.193 -24.273 -6.284 26.378 hybrid contribution -0.305 1.241 0.368 1.330 sum 7.887 -23.033 -5.915 25.054 Atomic orbital electron populations 1.70101 1.07843 1.27892 1.51798 1.25958 0.95756 1.03341 0.94731 0.85292 0.79000 0.78343 0.77724 1.18527 1.20354 1.20409 1.21465 0.93616 0.90886 1.50019 0.91751 1.19349 0.90107 0.89129 0.93155 1.62231 1.27161 1.02805 1.34587 1.22111 0.95675 0.89748 0.99568 1.21974 0.95375 0.97370 0.90377 1.62133 1.26330 1.02991 1.34540 1.21047 0.92620 0.87299 1.02050 1.19821 0.99960 0.95775 0.93422 1.21152 1.00025 0.95908 0.97428 1.21257 0.98372 0.96325 0.98847 1.21400 1.00604 1.00538 0.92160 1.19905 0.98536 0.94651 0.96222 1.19607 0.97289 0.94624 0.95106 1.20418 1.02044 0.97199 0.91488 1.21566 0.97667 0.99136 0.97142 1.21545 0.97314 0.97940 0.98950 1.20480 1.01000 0.98077 0.91772 1.22115 0.94616 0.87512 1.01495 1.21972 0.95672 0.98530 0.89638 0.92662 1.02404 0.98061 0.91519 0.96597 0.94457 0.89847 0.88759 0.93782 0.85785 0.84437 0.84575 0.91727 0.90655 0.91240 0.91000 0.90015 0.93115 0.89633 0.90240 0.88457 0.94356 0.96754 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.52 -30.21 8.47 25.60 0.22 -30.00 16 8 H 0.06 3.64 7.13 -2.91 -0.02 3.62 16 9 C 0.21 11.65 4.72 85.56 0.40 12.05 16 10 N -0.54 -24.74 4.70 -900.26 -4.23 -28.97 16 11 C 0.06 2.26 5.61 86.31 0.48 2.74 16 12 C 0.08 2.40 5.37 86.31 0.46 2.87 16 13 N -0.54 -15.27 4.69 -900.24 -4.22 -19.49 16 14 C 0.10 2.20 4.41 85.55 0.38 2.58 16 15 C -0.09 -2.04 4.59 -19.78 -0.09 -2.13 16 16 C -0.13 -2.67 8.64 22.20 0.19 -2.48 16 17 C -0.13 -2.45 10.05 22.20 0.22 -2.23 16 18 C -0.13 -2.39 9.61 22.36 0.21 -2.17 16 19 C -0.09 -1.87 5.74 -19.86 -0.11 -1.99 16 20 C -0.07 -1.47 5.74 -19.86 -0.11 -1.59 16 21 C -0.07 -1.55 5.00 29.74 0.15 -1.40 16 22 C -0.12 -1.93 5.98 30.62 0.18 -1.75 16 23 C -0.12 -1.90 5.98 30.61 0.18 -1.72 16 24 C -0.08 -1.17 5.67 29.74 0.17 -1.01 16 25 C 0.07 2.14 5.61 86.31 0.48 2.62 16 26 C 0.07 2.83 5.43 86.31 0.47 3.30 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 28 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 29 H 0.00 0.08 8.03 -2.39 -0.02 0.06 16 30 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 2.42 6.48 -2.39 -0.02 2.40 16 34 H 0.09 1.91 6.27 -2.39 -0.01 1.90 16 35 H 0.04 0.97 7.96 -2.39 -0.02 0.95 16 36 H 0.12 2.37 8.02 -2.91 -0.02 2.34 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.14 1.88 8.05 -2.91 -0.02 1.86 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.46 6.39 -2.39 -0.02 1.44 16 41 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.08 8.12 -2.39 -0.02 1.07 16 47 H 0.10 2.44 8.07 -2.39 -0.02 2.42 16 48 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 3.01 6.79 -2.39 -0.02 3.00 16 Total: -1.00 -66.42 380.80 -0.90 -67.32 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.89 Total: 13.38 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.35 Total: -21.83 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -8.17 Total: -105.63 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.42 -0.90 -67.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232636815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.985 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds