Wall clock time and date at job start Tue Mar 31 2020 11:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47010 * 270.00345 * 3 2 1 5 5 H 1.48498 * 109.47040 * 30.00129 * 3 2 1 6 6 H 1.48500 * 109.47235 * 150.00062 * 3 2 1 7 7 C 1.37878 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99744 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.50798 * 59.92420 * 9 7 2 11 11 C 1.53118 * 109.50586 * 299.80337 * 9 7 2 12 12 C 1.53114 * 109.16341 * 182.40612 * 11 9 7 13 13 C 1.53042 * 109.27910 * 57.65360 * 12 11 9 14 14 N 1.46846 * 109.52390 * 300.82210 * 13 12 11 15 15 C 1.46900 * 111.00146 * 185.83627 * 14 13 12 16 16 C 1.50704 * 109.46759 * 45.78917 * 15 14 13 17 17 C 1.38308 * 119.96530 * 269.97556 * 16 15 14 18 18 C 1.38265 * 120.14816 * 179.72555 * 17 16 15 19 19 C 1.38117 * 120.07548 * 0.55541 * 18 17 16 20 20 C 1.38895 * 119.92377 * 359.47075 * 19 18 17 21 21 N 1.39680 * 120.07262 * 180.23391 * 20 19 18 22 22 C 1.48541 * 110.99788 * 296.82108 * 21 20 19 23 23 C 1.54938 * 103.22419 * 159.72293 * 22 21 20 24 24 C 1.54594 * 102.92276 * 322.58471 * 23 22 21 25 25 C 1.47897 * 111.00206 * 54.21520 * 21 20 19 26 26 C 1.38080 * 119.95942 * 90.00155 * 16 15 14 27 27 C 1.46847 * 111.19624 * 61.74061 * 14 13 12 28 28 H 0.97002 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.52290 * 302.31405 * 11 9 7 30 30 H 1.08993 * 109.52181 * 62.43915 * 11 9 7 31 31 H 1.08997 * 109.50600 * 177.59442 * 12 11 9 32 32 H 1.09007 * 109.50326 * 297.71578 * 12 11 9 33 33 H 1.09000 * 109.46631 * 180.80597 * 13 12 11 34 34 H 1.09002 * 109.46043 * 60.83740 * 13 12 11 35 35 H 1.09004 * 109.47261 * 285.79193 * 15 14 13 36 36 H 1.08997 * 109.46935 * 165.79109 * 15 14 13 37 37 H 1.07999 * 119.92109 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.95622 * 180.27526 * 18 17 16 39 39 H 1.07996 * 120.03850 * 179.74803 * 19 18 17 40 40 H 1.08995 * 110.66459 * 278.15780 * 22 21 20 41 41 H 1.08997 * 110.66185 * 41.28659 * 22 21 20 42 42 H 1.09002 * 110.71986 * 204.22734 * 23 22 21 43 43 H 1.08995 * 110.71974 * 80.94678 * 23 22 21 44 44 H 1.08995 * 110.31345 * 263.04298 * 24 23 22 45 45 H 1.08993 * 110.30860 * 140.87205 * 24 23 22 46 46 H 1.09002 * 109.92129 * 333.51543 * 25 21 20 47 47 H 1.09004 * 109.91099 * 94.80186 * 25 21 20 48 48 H 1.08000 * 120.04283 * 0.02562 * 26 16 15 49 49 H 1.08999 * 109.46334 * 58.27237 * 27 14 13 50 50 H 1.09004 * 109.46318 * 178.24501 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 1 3.8758 -0.6786 0.8886 11 6 4.0222 -0.4775 -1.2531 12 6 5.5521 -0.5346 -1.2763 13 6 6.0039 -1.9963 -1.2385 14 7 5.4907 -2.6373 -0.0211 15 6 6.0187 -4.0010 0.1185 16 6 7.5012 -3.9958 -0.1524 17 6 7.9691 -4.1948 -1.4386 18 6 9.3282 -4.1851 -1.6924 19 6 10.2238 -3.9880 -0.6596 20 6 9.7573 -3.7883 0.6334 21 7 10.6601 -3.5838 1.6794 22 6 11.5221 -4.7768 1.8795 23 6 12.7400 -4.2088 2.6507 24 6 12.9417 -2.8195 2.0035 25 6 11.5811 -2.4676 1.3741 26 6 8.3908 -3.7929 0.8839 27 6 4.0224 -2.6367 0.0007 28 1 -0.4850 0.8401 0.0004 29 1 3.6258 -0.9697 -2.1413 30 1 3.6958 0.5622 -1.2367 31 1 5.9201 -0.0634 -2.1877 32 1 5.9491 -0.0084 -0.4080 33 1 7.0930 -2.0400 -1.2405 34 1 5.6181 -2.5184 -2.1142 35 1 5.5213 -4.6580 -0.5950 36 1 5.8356 -4.3595 1.1314 37 1 7.2710 -4.3533 -2.2473 38 1 9.6900 -4.3364 -2.6987 39 1 11.2854 -3.9846 -0.8578 40 1 11.0057 -5.5289 2.4759 41 1 11.8332 -5.1916 0.9207 42 1 13.6187 -4.8359 2.4998 43 1 12.5125 -4.1106 3.7121 44 1 13.7128 -2.8686 1.2346 45 1 13.2092 -2.0840 2.7621 46 1 11.6881 -2.3590 0.2948 47 1 11.1997 -1.5427 1.8069 48 1 8.0249 -3.6384 1.8882 49 1 3.6459 -3.1557 -0.8807 50 1 3.6723 -3.1454 0.8989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235092774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:46 Heat of formation + Delta-G solvation = 38.176463 kcal Electronic energy + Delta-G solvation = -26431.350912 eV Core-core repulsion = 23036.949883 eV Total energy + Delta-G solvation = -3394.401029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50130 -38.91390 -37.55743 -34.26191 -32.70916 -32.20442 -30.83755 -30.21421 -29.19821 -28.58379 -26.15680 -24.88829 -23.09051 -22.65010 -21.99472 -21.25287 -21.01430 -19.91156 -18.81113 -17.28800 -16.68045 -16.34938 -16.00531 -15.64526 -15.27379 -14.64317 -14.41386 -14.23665 -13.93782 -13.67675 -13.47532 -13.40149 -13.12180 -13.02416 -12.70046 -12.44859 -12.27046 -12.15683 -12.02064 -11.76003 -11.65281 -11.49690 -11.29043 -11.10698 -11.01970 -10.97393 -10.88676 -10.44614 -10.04114 -9.91996 -9.65204 -9.09250 -8.90485 -8.86223 -8.82080 -8.59250 -8.48095 -7.75448 -6.03951 -4.02833 1.16224 1.35218 3.31463 3.42732 3.46838 3.57849 3.64259 4.31832 4.45671 4.45879 4.54412 4.60947 4.75077 4.84036 4.94998 5.01456 5.15497 5.24067 5.27679 5.29772 5.36323 5.43807 5.47567 5.51860 5.54333 5.60079 5.65314 5.70493 5.71383 5.82074 5.86590 5.93884 6.02967 6.05562 6.20150 6.30743 6.32242 6.38080 6.38771 6.48342 6.51002 6.57113 6.65388 6.74785 6.85063 6.88381 7.23937 7.27432 7.44642 7.62129 7.69240 7.90211 8.55351 8.99262 9.59169 11.09310 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002870 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.560157 B = 9754.059101 C =10134.718497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.122 4.122 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.091 3.909 16 C -0.065 4.065 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.156 4.156 20 C 0.077 3.923 21 N -0.482 5.482 22 C 0.039 3.961 23 C -0.124 4.124 24 C -0.132 4.132 25 C 0.037 3.963 26 C -0.073 4.073 27 C 0.077 3.923 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.131 0.869 49 H 0.027 0.973 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.247 -9.291 -0.020 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.054 0.946 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.068 4.068 14 N -0.259 5.259 15 C -0.036 4.036 16 C -0.066 4.066 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.176 4.176 20 C -0.017 4.017 21 N -0.203 5.203 22 C -0.087 4.087 23 C -0.162 4.162 24 C -0.170 4.170 25 C -0.090 4.090 26 C -0.092 4.092 27 C -0.050 4.050 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.149 0.851 49 H 0.045 0.955 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 25.923 -8.796 0.866 27.389 hybrid contribution 0.506 0.390 -1.649 1.768 sum 26.429 -8.406 -0.783 27.745 Atomic orbital electron populations 1.69901 1.06304 1.26902 1.51035 1.24979 0.94659 0.99043 0.94427 0.86829 0.80068 0.83466 0.77833 1.20770 1.22649 1.18757 1.21005 0.88799 0.94467 1.50885 0.90962 1.19154 0.95880 0.91109 0.93712 0.94615 1.22021 0.92680 1.00185 1.01081 1.21654 0.97991 0.95400 1.00679 1.22107 0.99090 0.95219 0.90378 1.62165 1.10280 1.15619 1.37812 1.21098 0.89607 0.91138 1.01783 1.19829 0.95661 0.98103 0.92992 1.21133 0.95478 1.00364 0.96430 1.20917 0.93106 1.00483 0.98621 1.21504 0.99455 1.02949 0.93671 1.18933 0.92918 1.00749 0.89121 1.62395 1.14897 1.04537 1.38489 1.23336 0.93013 0.92911 0.99464 1.22496 0.97316 0.95908 1.00463 1.22416 0.96639 0.97678 1.00249 1.23007 0.91413 0.95138 0.99445 1.20878 0.90762 0.97950 0.99624 1.22115 0.83324 0.99741 0.99807 0.92723 0.92640 0.93603 0.92980 0.91904 0.91287 0.95667 0.94212 0.89919 0.86207 0.86294 0.86736 0.89759 0.93330 0.90955 0.90488 0.91507 0.90766 0.93070 0.89929 0.85106 0.95513 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 22.43 24.36 -169.99 -4.14 18.28 16 4 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 6 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.51 -14.46 9.14 -34.44 -0.31 -14.78 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.04 0.90 7.19 -51.93 -0.37 0.53 16 11 C -0.12 -2.69 4.74 -26.61 -0.13 -2.82 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.36 16 13 C 0.06 1.00 4.58 -3.83 -0.02 0.98 16 14 N -0.53 -9.35 4.80 -236.10 -1.13 -10.49 16 15 C 0.09 1.31 5.43 -4.97 -0.03 1.28 16 16 C -0.06 -0.85 4.12 -104.65 -0.43 -1.28 16 17 C -0.12 -1.37 7.79 -39.55 -0.31 -1.67 16 18 C -0.11 -1.19 10.04 -39.62 -0.40 -1.59 16 19 C -0.16 -1.66 7.90 -39.38 -0.31 -1.97 16 20 C 0.08 0.90 4.86 -83.78 -0.41 0.50 16 21 N -0.48 -5.15 5.28 -167.16 -0.88 -6.03 16 22 C 0.04 0.33 6.43 -1.89 -0.01 0.32 16 23 C -0.12 -0.84 7.06 -24.87 -0.18 -1.02 16 24 C -0.13 -0.91 6.93 -25.38 -0.18 -1.09 16 25 C 0.04 0.34 6.48 -2.76 -0.02 0.32 16 26 C -0.07 -0.95 9.62 -39.38 -0.38 -1.32 16 27 C 0.08 1.56 4.65 -3.83 -0.02 1.54 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.07 3.37 -51.93 -0.17 0.90 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.07 5.64 -51.93 -0.29 0.78 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.56 8.02 -51.93 -0.42 0.14 16 36 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.11 1.05 7.04 -52.49 -0.37 0.68 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.40 7.03 -51.93 -0.36 0.04 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.47 6.30 -51.93 -0.33 0.15 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -30.53 372.92 -11.99 -42.52 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.68 Total: -0.12 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.55 Total: -22.67 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.24 Total: -43.62 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.53 -11.99 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235092774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.693 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds