Wall clock time and date at job start Tue Mar 31 2020 11:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47010 * 270.00345 * 3 2 1 5 5 H 1.48498 * 109.47040 * 30.00129 * 3 2 1 6 6 H 1.48500 * 109.47235 * 150.00062 * 3 2 1 7 7 C 1.37878 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99744 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.50798 * 59.92420 * 9 7 2 11 11 C 1.53118 * 109.50586 * 299.80337 * 9 7 2 12 12 C 1.53114 * 109.16341 * 182.40612 * 11 9 7 13 13 C 1.53042 * 109.27910 * 57.65360 * 12 11 9 14 14 N 1.46846 * 109.52390 * 300.82210 * 13 12 11 15 15 C 1.46900 * 111.00146 * 185.83627 * 14 13 12 16 16 C 1.50704 * 109.46759 * 45.78917 * 15 14 13 17 17 C 1.38308 * 119.96530 * 269.97556 * 16 15 14 18 18 C 1.38265 * 120.14816 * 179.72555 * 17 16 15 19 19 C 1.38117 * 120.07548 * 0.55541 * 18 17 16 20 20 C 1.38895 * 119.92377 * 359.47075 * 19 18 17 21 21 N 1.39680 * 120.07262 * 180.23391 * 20 19 18 22 22 C 1.48541 * 110.99788 * 296.82108 * 21 20 19 23 23 C 1.54938 * 103.22419 * 159.72293 * 22 21 20 24 24 C 1.54594 * 102.92276 * 322.58471 * 23 22 21 25 25 C 1.47897 * 111.00206 * 54.21520 * 21 20 19 26 26 C 1.38080 * 119.95942 * 90.00155 * 16 15 14 27 27 C 1.46847 * 111.19624 * 61.74061 * 14 13 12 28 28 H 0.97002 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.52290 * 302.31405 * 11 9 7 30 30 H 1.08993 * 109.52181 * 62.43915 * 11 9 7 31 31 H 1.08997 * 109.50600 * 177.59442 * 12 11 9 32 32 H 1.09007 * 109.50326 * 297.71578 * 12 11 9 33 33 H 1.09000 * 109.46631 * 180.80597 * 13 12 11 34 34 H 1.09002 * 109.46043 * 60.83740 * 13 12 11 35 35 H 1.09004 * 109.47261 * 285.79193 * 15 14 13 36 36 H 1.08997 * 109.46935 * 165.79109 * 15 14 13 37 37 H 1.07999 * 119.92109 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.95622 * 180.27526 * 18 17 16 39 39 H 1.07996 * 120.03850 * 179.74803 * 19 18 17 40 40 H 1.08995 * 110.66459 * 278.15780 * 22 21 20 41 41 H 1.08997 * 110.66185 * 41.28659 * 22 21 20 42 42 H 1.09002 * 110.71986 * 204.22734 * 23 22 21 43 43 H 1.08995 * 110.71974 * 80.94678 * 23 22 21 44 44 H 1.08995 * 110.31345 * 263.04298 * 24 23 22 45 45 H 1.08993 * 110.30860 * 140.87205 * 24 23 22 46 46 H 1.09002 * 109.92129 * 333.51543 * 25 21 20 47 47 H 1.09004 * 109.91099 * 94.80186 * 25 21 20 48 48 H 1.08000 * 120.04283 * 0.02562 * 26 16 15 49 49 H 1.08999 * 109.46334 * 58.27237 * 27 14 13 50 50 H 1.09004 * 109.46318 * 178.24501 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 1 3.8758 -0.6786 0.8886 11 6 4.0222 -0.4775 -1.2531 12 6 5.5521 -0.5346 -1.2763 13 6 6.0039 -1.9963 -1.2385 14 7 5.4907 -2.6373 -0.0211 15 6 6.0187 -4.0010 0.1185 16 6 7.5012 -3.9958 -0.1524 17 6 7.9691 -4.1948 -1.4386 18 6 9.3282 -4.1851 -1.6924 19 6 10.2238 -3.9880 -0.6596 20 6 9.7573 -3.7883 0.6334 21 7 10.6601 -3.5838 1.6794 22 6 11.5221 -4.7768 1.8795 23 6 12.7400 -4.2088 2.6507 24 6 12.9417 -2.8195 2.0035 25 6 11.5811 -2.4676 1.3741 26 6 8.3908 -3.7929 0.8839 27 6 4.0224 -2.6367 0.0007 28 1 -0.4850 0.8401 0.0004 29 1 3.6258 -0.9697 -2.1413 30 1 3.6958 0.5622 -1.2367 31 1 5.9201 -0.0634 -2.1877 32 1 5.9491 -0.0084 -0.4080 33 1 7.0930 -2.0400 -1.2405 34 1 5.6181 -2.5184 -2.1142 35 1 5.5213 -4.6580 -0.5950 36 1 5.8356 -4.3595 1.1314 37 1 7.2710 -4.3533 -2.2473 38 1 9.6900 -4.3364 -2.6987 39 1 11.2854 -3.9846 -0.8578 40 1 11.0057 -5.5289 2.4759 41 1 11.8332 -5.1916 0.9207 42 1 13.6187 -4.8359 2.4998 43 1 12.5125 -4.1106 3.7121 44 1 13.7128 -2.8686 1.2346 45 1 13.2092 -2.0840 2.7621 46 1 11.6881 -2.3590 0.2948 47 1 11.1997 -1.5427 1.8069 48 1 8.0249 -3.6384 1.8882 49 1 3.6459 -3.1557 -0.8807 50 1 3.6723 -3.1454 0.8989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235092774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:46 Heat of formation + Delta-G solvation = 19.894568 kcal Electronic energy + Delta-G solvation = -26432.143675 eV Core-core repulsion = 23036.949883 eV Total energy + Delta-G solvation = -3395.193792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35390 -40.13213 -38.62134 -35.79739 -34.22078 -33.35343 -32.06392 -31.87907 -29.82525 -29.42565 -27.37273 -26.83689 -24.21399 -23.60159 -23.33650 -22.39848 -21.79365 -20.85506 -20.47193 -18.84148 -18.07742 -17.28947 -17.05768 -16.81856 -16.22345 -16.05596 -15.86564 -15.28645 -15.06623 -14.97297 -14.91936 -14.75301 -14.26181 -14.14687 -13.79436 -13.73605 -13.62590 -13.22843 -12.99014 -12.94414 -12.81099 -12.68288 -12.36231 -12.25436 -12.18431 -12.05831 -11.94182 -11.87166 -11.74406 -11.46143 -11.43108 -11.01232 -10.81282 -10.61894 -9.78125 -9.63515 -9.44795 -9.11917 -8.30592 -6.33709 0.27760 0.46451 1.29173 1.36002 1.47184 2.32598 2.64532 2.91316 3.05296 3.22182 3.70889 3.76658 3.89320 3.97461 4.02512 4.08354 4.10042 4.17539 4.26769 4.31421 4.33321 4.41749 4.45459 4.52857 4.58778 4.63239 4.67212 4.75475 4.79204 4.80488 4.88525 4.89935 4.95888 4.96980 5.03984 5.04944 5.11033 5.14004 5.16978 5.23190 5.28322 5.43862 5.46327 5.53860 5.62079 5.65679 5.72117 5.82321 5.86783 6.16321 6.24522 6.35132 6.46320 6.73490 7.31969 8.86226 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002870 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.560157 B = 9754.059101 C =10134.718497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.035 0.965 9 C 0.021 3.979 10 H 0.023 0.977 11 C -0.121 4.121 12 C -0.115 4.115 13 C 0.065 3.935 14 N -0.541 5.541 15 C 0.094 3.906 16 C -0.074 4.074 17 C -0.121 4.121 18 C -0.107 4.107 19 C -0.152 4.152 20 C 0.074 3.926 21 N -0.501 5.501 22 C 0.037 3.963 23 C -0.119 4.119 24 C -0.127 4.127 25 C 0.034 3.966 26 C -0.090 4.090 27 C 0.089 3.911 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.020 0.980 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.113 -9.148 -1.169 31.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.227 1.227 6 H -0.175 1.175 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.002 3.998 10 H 0.041 0.959 11 C -0.159 4.159 12 C -0.152 4.152 13 C -0.063 4.063 14 N -0.266 5.266 15 C -0.033 4.033 16 C -0.075 4.075 17 C -0.140 4.140 18 C -0.126 4.126 19 C -0.172 4.172 20 C -0.020 4.020 21 N -0.223 5.223 22 C -0.089 4.089 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.093 4.093 26 C -0.109 4.109 27 C -0.039 4.039 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.136 0.864 49 H 0.039 0.961 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 29.819 -8.672 -0.283 31.056 hybrid contribution -0.699 0.231 -1.251 1.452 sum 29.120 -8.441 -1.534 30.358 Atomic orbital electron populations 1.70042 1.08111 1.27976 1.52897 1.25816 0.95381 1.02862 0.94239 0.85817 0.79030 0.78813 0.78624 1.19243 1.22685 1.17469 1.21324 0.91374 0.93034 1.49884 0.94701 1.19060 0.92938 0.93584 0.94267 0.95915 1.21912 0.95645 0.98857 0.99440 1.21635 0.94809 0.96829 1.01970 1.22107 1.00027 0.94073 0.90083 1.62072 1.08013 1.17876 1.38647 1.21082 0.90842 0.89358 1.02016 1.19667 0.94427 0.99633 0.93782 1.21256 0.96407 1.00392 0.95908 1.21213 0.92440 0.99092 0.99846 1.21723 1.00524 1.01891 0.93075 1.19041 0.92626 1.00285 0.90046 1.62366 1.15703 1.05756 1.38458 1.23390 0.93330 0.92220 0.99929 1.22496 0.97205 0.96037 0.99943 1.22412 0.95596 0.97769 1.00698 1.23041 0.92313 0.94283 0.99637 1.20868 0.91689 0.99218 0.99128 1.21804 0.85590 0.97258 0.99249 0.92561 0.93112 0.94743 0.90105 0.92332 0.89463 0.95060 0.93676 0.89957 0.85441 0.83685 0.84889 0.90276 0.92791 0.89025 0.90858 0.90022 0.90231 0.92937 0.91129 0.86445 0.96139 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.16 16 2 C 0.01 0.83 5.45 84.66 0.46 1.29 16 3 Si 0.95 46.58 24.36 68.60 1.67 48.25 16 4 H -0.27 -12.38 6.89 99.48 0.69 -11.69 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.25 -11.68 6.53 99.48 0.65 -11.03 16 7 C -0.52 -30.15 9.14 25.60 0.23 -29.92 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.20 16 9 C 0.02 0.99 1.85 -11.49 -0.02 0.97 16 10 H 0.02 1.15 7.19 -2.39 -0.02 1.13 16 11 C -0.12 -5.19 4.74 30.67 0.15 -5.04 16 12 C -0.11 -3.91 6.09 30.65 0.19 -3.73 16 13 C 0.06 2.00 4.58 86.33 0.40 2.40 16 14 N -0.54 -18.47 4.80 -900.90 -4.32 -22.80 16 15 C 0.09 2.63 5.43 85.56 0.46 3.10 16 16 C -0.07 -1.83 4.12 -19.88 -0.08 -1.91 16 17 C -0.12 -2.55 7.79 22.29 0.17 -2.37 16 18 C -0.11 -1.91 10.04 22.25 0.22 -1.68 16 19 C -0.15 -2.79 7.90 22.40 0.18 -2.61 16 20 C 0.07 1.62 4.86 38.21 0.19 1.81 16 21 N -0.50 -10.00 5.28 -682.77 -3.60 -13.61 16 22 C 0.04 0.56 6.43 86.65 0.56 1.12 16 23 C -0.12 -1.33 7.06 31.80 0.22 -1.10 16 24 C -0.13 -1.43 6.93 31.47 0.22 -1.22 16 25 C 0.03 0.56 6.48 86.45 0.56 1.12 16 26 C -0.09 -2.25 9.62 22.40 0.22 -2.04 16 27 C 0.09 3.63 4.65 86.33 0.40 4.04 16 28 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.03 1.55 3.37 -2.39 -0.01 1.54 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.09 2.45 5.64 -2.39 -0.01 2.43 16 34 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.22 8.02 -2.39 -0.02 1.20 16 36 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 37 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.13 1.93 7.04 -2.91 -0.02 1.91 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 0.76 7.03 -2.39 -0.02 0.74 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.84 6.30 -2.39 -0.02 0.83 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 49 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -67.24 372.92 -0.42 -67.66 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.81 Total: 16.43 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.72 Total: -35.78 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -7.63 Total: -96.56 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -67.24 -0.42 -67.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235092774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.556 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds