Wall clock time and date at job start Tue Mar 31 2020 10:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86790 * 120.00065 * 2 1 4 4 H 1.48500 * 109.47459 * 270.00004 * 3 2 1 5 5 H 1.48501 * 109.47134 * 30.00489 * 3 2 1 6 6 H 1.48506 * 109.47246 * 149.99911 * 3 2 1 7 7 C 1.39950 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99659 * 163.53317 * 7 2 1 9 9 C 1.41387 * 120.00333 * 343.53942 * 7 2 1 10 10 C 1.40735 * 120.24590 * 334.17976 * 9 7 2 11 11 C 1.37589 * 119.74998 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.24774 * 0.02709 * 11 10 9 13 13 C 1.38610 * 120.50128 * 359.67855 * 12 11 10 14 14 C 1.37647 * 120.24664 * 0.59889 * 13 12 11 15 15 C 1.50691 * 120.12937 * 179.70031 * 14 13 12 16 16 N 1.46899 * 109.47306 * 259.72582 * 15 14 13 17 17 C 1.46853 * 110.99982 * 45.79034 * 16 15 14 18 18 C 1.53040 * 109.52237 * 185.83919 * 17 16 15 19 19 C 1.53121 * 109.27742 * 300.82005 * 18 17 16 20 20 N 1.46900 * 109.51635 * 177.55743 * 19 18 17 21 21 C 1.48540 * 110.99947 * 57.60767 * 20 19 18 22 22 C 1.54937 * 103.22526 * 159.71667 * 21 20 19 23 23 C 1.54604 * 102.92219 * 322.58288 * 22 21 20 24 24 C 1.47905 * 110.99355 * 174.99750 * 20 19 18 25 25 C 1.53117 * 109.16185 * 57.65887 * 19 18 17 26 26 C 1.46844 * 111.00125 * 169.99844 * 16 15 14 27 27 H 0.97006 * 120.00164 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12495 * 359.96214 * 10 9 7 29 29 H 1.07999 * 119.88065 * 180.02562 * 11 10 9 30 30 H 1.08005 * 119.75173 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.87835 * 180.29788 * 13 12 11 32 32 H 1.09001 * 109.47419 * 139.72473 * 15 14 13 33 33 H 1.09006 * 109.47358 * 19.72785 * 15 14 13 34 34 H 1.09001 * 109.46232 * 65.82531 * 17 16 15 35 35 H 1.08993 * 109.46041 * 305.85839 * 17 16 15 36 36 H 1.09000 * 109.49972 * 180.87573 * 18 17 16 37 37 H 1.09005 * 109.49854 * 60.76015 * 18 17 16 38 38 H 1.08998 * 109.52070 * 297.74674 * 19 18 17 39 39 H 1.08996 * 110.66660 * 278.14866 * 21 20 19 40 40 H 1.08993 * 110.66524 * 41.28151 * 21 20 19 41 41 H 1.09003 * 110.72239 * 204.22464 * 22 21 20 42 42 H 1.08999 * 110.72897 * 80.94142 * 22 21 20 43 43 H 1.09001 * 110.30486 * 263.04031 * 23 22 21 44 44 H 1.09000 * 110.30708 * 140.87750 * 23 22 21 45 45 H 1.08990 * 109.91925 * 333.51273 * 24 20 19 46 46 H 1.09007 * 109.91521 * 94.61036 * 24 20 19 47 47 H 1.08998 * 109.50522 * 62.27894 * 25 19 18 48 48 H 1.08996 * 109.50553 * 182.40577 * 25 19 18 49 49 H 1.09004 * 109.46458 * 54.14661 * 26 16 15 50 50 H 1.09001 * 109.46482 * 294.17577 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0547 -1.2311 -0.2657 9 6 1.3444 -2.4116 0.3459 10 6 0.2133 -2.3798 1.1827 11 6 -0.4248 -3.5532 1.5129 12 6 0.0429 -4.7639 1.0248 13 6 1.1523 -4.8066 0.1950 14 6 1.8098 -3.6457 -0.1438 15 6 3.0196 -3.6959 -1.0408 16 7 4.2380 -3.6031 -0.2253 17 6 4.1606 -4.4939 0.9396 18 6 5.3766 -4.2650 1.8402 19 6 6.6547 -4.5444 1.0445 20 7 7.8268 -4.2699 1.8864 21 6 7.7945 -5.0868 3.1266 22 6 9.2716 -5.0801 3.5941 23 6 10.0556 -5.1560 2.2638 24 6 9.0778 -4.6424 1.1908 25 6 6.6871 -3.6378 -0.1890 26 6 5.4331 -3.8849 -1.0307 27 1 -0.4851 0.8401 0.0004 28 1 -0.1522 -1.4380 1.5645 29 1 -1.2932 -3.5313 2.1546 30 1 -0.4640 -5.6802 1.2895 31 1 1.5050 -5.7547 -0.1833 32 1 2.9872 -2.8617 -1.7417 33 1 3.0233 -4.6352 -1.5939 34 1 4.1476 -5.5308 0.6037 35 1 3.2494 -4.2821 1.4989 36 1 5.3268 -4.9373 2.6967 37 1 5.3828 -3.2318 2.1876 38 1 6.6672 -5.5880 0.7301 39 1 7.1518 -4.6240 3.8754 40 1 7.4643 -6.1026 2.9096 41 1 9.4831 -5.9494 4.2167 42 1 9.5035 -4.1576 4.1264 43 1 10.3427 -6.1861 2.0523 44 1 10.9383 -4.5180 2.3079 45 1 8.8781 -5.4291 0.4633 46 1 9.4973 -3.7705 0.6888 47 1 6.7139 -2.5948 0.1265 48 1 7.5736 -3.8620 -0.7822 49 1 5.4461 -3.2307 -1.9025 50 1 5.4141 -4.9247 -1.3574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:35 Heat of formation + Delta-G solvation = 7.499073 kcal Electronic energy + Delta-G solvation = -27002.063165 eV Core-core repulsion = 23606.331865 eV Total energy + Delta-G solvation = -3395.731301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84569 -39.73407 -38.33694 -35.45426 -34.89452 -32.32333 -31.86524 -31.25566 -30.05219 -29.63611 -27.30573 -26.17783 -24.10760 -23.78350 -22.77871 -21.89719 -21.45769 -20.99383 -20.56301 -18.96132 -17.48455 -17.13117 -16.82201 -16.37008 -16.25758 -15.88634 -15.72986 -15.21495 -14.96697 -14.88340 -14.73296 -14.34019 -14.28440 -13.81057 -13.50492 -13.41564 -13.15942 -13.00465 -12.91510 -12.87350 -12.71748 -12.57997 -12.34530 -12.19831 -12.11043 -12.07508 -11.95120 -11.88823 -11.44172 -11.32487 -11.29302 -11.20821 -10.99995 -10.91930 -9.34008 -9.22762 -9.18753 -8.94154 -8.54584 -6.19968 1.02376 1.14532 1.40782 1.51406 1.58551 2.25963 2.81628 2.97963 3.19328 3.68165 3.76201 3.85476 3.95172 4.02888 4.10104 4.25028 4.26689 4.36445 4.37701 4.39973 4.51173 4.54508 4.62173 4.64497 4.67371 4.72297 4.77373 4.81460 4.85162 4.93023 4.96165 4.99910 5.05041 5.09276 5.14055 5.19554 5.22547 5.25111 5.30976 5.35169 5.41973 5.44914 5.57960 5.81947 6.01509 6.05442 6.16224 6.22483 6.26503 6.36342 6.46113 6.50357 6.82893 7.09258 7.16562 8.41758 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.003860 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.247286 B = 7251.258320 C = 8225.979689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.035 3.965 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.469 4.469 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.194 4.194 11 C -0.114 4.114 12 C -0.245 4.245 13 C -0.089 4.089 14 C -0.199 4.199 15 C 0.134 3.866 16 N -0.537 5.537 17 C 0.071 3.929 18 C -0.098 4.098 19 C 0.089 3.911 20 N -0.527 5.527 21 C 0.030 3.970 22 C -0.119 4.119 23 C -0.127 4.127 24 C 0.033 3.967 25 C -0.096 4.096 26 C 0.058 3.942 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.025 0.975 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.744 -8.933 2.369 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.214 4.214 11 C -0.132 4.132 12 C -0.264 4.264 13 C -0.108 4.108 14 C -0.201 4.201 15 C 0.007 3.993 16 N -0.262 5.262 17 C -0.057 4.057 18 C -0.137 4.137 19 C -0.020 4.020 20 N -0.252 5.252 21 C -0.097 4.097 22 C -0.157 4.157 23 C -0.165 4.165 24 C -0.095 4.095 25 C -0.134 4.134 26 C -0.070 4.070 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 16.583 -7.736 2.620 18.486 hybrid contribution -0.565 -0.691 -0.524 1.034 sum 16.019 -8.427 2.096 18.221 Atomic orbital electron populations 1.69902 1.08893 1.30027 1.36904 1.26692 0.95284 1.04254 0.91694 0.85381 0.79227 0.76864 0.79326 1.18822 1.19609 1.18646 1.19878 0.98148 0.91391 1.40482 0.89510 1.17677 0.90896 0.92745 0.88662 1.21327 1.00606 0.96706 1.02728 1.20916 0.98969 0.93335 1.00004 1.20641 1.01669 0.96634 1.07430 1.20664 0.95886 0.96327 0.97934 1.19757 1.01023 0.93265 1.06013 1.20482 0.86957 0.98361 0.93456 1.61911 1.01935 1.53637 1.08739 1.21884 0.98401 0.93059 0.92375 1.21547 0.92826 1.01839 0.97449 1.21730 0.90190 0.96761 0.93307 1.64786 1.01691 1.53224 1.05463 1.23264 0.98382 0.95555 0.92515 1.22476 0.93129 1.02780 0.97365 1.22401 0.98264 1.01812 0.94010 1.22905 0.90256 0.99609 0.96684 1.21504 0.96576 1.00187 0.95110 1.22099 0.89864 0.98978 0.96100 0.90617 0.88656 0.87935 0.87040 0.87518 0.92173 0.95443 0.95718 0.92229 0.91233 0.92505 0.94402 0.90686 0.93819 0.89646 0.91031 0.90580 0.90185 0.93813 0.90478 0.92026 0.90171 0.90591 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.40 10.97 21.83 0.24 -44.16 16 2 C 0.03 1.78 5.16 85.26 0.44 2.22 16 3 Si 0.97 39.88 29.59 68.60 2.03 41.91 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.47 -25.15 8.18 23.46 0.19 -24.96 16 8 H 0.09 4.60 6.85 -2.91 -0.02 4.58 16 9 C 0.10 5.49 5.56 -21.29 -0.12 5.37 16 10 C -0.19 -10.42 8.68 22.73 0.20 -10.23 16 11 C -0.11 -5.41 10.02 22.22 0.22 -5.19 16 12 C -0.24 -10.69 10.05 22.46 0.23 -10.46 16 13 C -0.09 -3.87 8.64 22.22 0.19 -3.68 16 14 C -0.20 -9.30 3.73 -19.41 -0.07 -9.37 16 15 C 0.13 5.46 4.60 85.55 0.39 5.85 16 16 N -0.54 -19.83 4.53 -900.91 -4.08 -23.91 16 17 C 0.07 2.51 4.81 86.33 0.42 2.92 16 18 C -0.10 -2.99 5.11 30.65 0.16 -2.84 16 19 C 0.09 2.29 1.72 44.99 0.08 2.37 16 20 N -0.53 -12.33 5.11 -857.38 -4.38 -16.71 16 21 C 0.03 0.61 5.32 86.65 0.46 1.08 16 22 C -0.12 -1.85 7.06 31.80 0.22 -1.63 16 23 C -0.13 -1.83 6.93 31.48 0.22 -1.61 16 24 C 0.03 0.62 5.61 86.45 0.49 1.10 16 25 C -0.10 -2.52 5.32 30.65 0.16 -2.36 16 26 C 0.06 1.70 5.42 86.33 0.47 2.17 16 27 H 0.28 13.85 8.30 -92.70 -0.77 13.08 16 28 H 0.10 5.41 6.21 -2.91 -0.02 5.40 16 29 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.11 4.02 8.03 -2.91 -0.02 4.00 16 32 H 0.06 2.63 7.34 -2.39 -0.02 2.62 16 33 H 0.03 1.02 7.94 -2.38 -0.02 1.00 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 2.49 6.04 -2.39 -0.01 2.48 16 36 H 0.07 1.92 7.03 -2.39 -0.02 1.90 16 37 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.04 0.96 7.96 -2.39 -0.02 0.94 16 39 H 0.07 1.62 7.71 -2.39 -0.02 1.60 16 40 H 0.04 0.86 8.02 -2.39 -0.02 0.84 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.04 0.79 7.65 -2.39 -0.02 0.77 16 46 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.08 1.75 7.45 -2.39 -0.02 1.73 16 49 H 0.08 2.18 8.12 -2.38 -0.02 2.16 16 50 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -58.35 377.50 -0.97 -59.31 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.89 Total: 32.80 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 4.34 Total: -49.25 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -8.23 Total: -84.78 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -58.35 -0.97 -59.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.812 kcal (2) G-P(sol) polarization free energy of solvation -58.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds