Wall clock time and date at job start Tue Mar 31 2020 11:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48503 * 109.46863 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47242 * 299.99996 * 3 2 1 6 6 H 1.48503 * 109.47024 * 60.00250 * 3 2 1 7 7 C 1.39943 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00449 * 191.68547 * 7 2 1 9 9 C 1.41402 * 119.99571 * 11.69241 * 7 2 1 10 10 C 1.40735 * 120.24398 * 29.16993 * 9 7 2 11 11 C 1.37601 * 119.74199 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.25000 * 359.97138 * 11 10 9 13 13 C 1.38611 * 120.50140 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.25223 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.13355 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.47351 * 104.50455 * 15 14 13 17 17 C 1.46959 * 110.99942 * 288.35460 * 16 15 14 18 18 C 1.53053 * 109.36084 * 176.80983 * 17 16 15 19 19 N 1.46956 * 109.36337 * 58.40239 * 18 17 16 20 20 C 1.46901 * 110.99871 * 176.80792 * 19 18 17 21 21 C 1.54268 * 110.03132 * 60.96374 * 20 19 18 22 22 C 1.54887 * 104.19596 * 217.10617 * 21 20 19 23 23 C 1.54886 * 102.74996 * 37.94406 * 22 21 20 24 24 C 1.53881 * 110.03404 * 303.79990 * 20 19 18 25 25 C 1.46950 * 110.88068 * 300.67642 * 19 18 17 26 26 C 1.46956 * 110.99871 * 164.55452 * 16 15 14 27 27 H 0.97007 * 119.99913 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.13015 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87096 * 180.25128 * 11 10 9 30 30 H 1.07996 * 119.75145 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.87878 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.47216 * 224.50589 * 15 14 13 33 33 H 1.09005 * 109.46831 * 344.50421 * 15 14 13 34 34 H 1.09000 * 109.48994 * 296.77632 * 17 16 15 35 35 H 1.09001 * 109.48758 * 56.84092 * 17 16 15 36 36 H 1.08993 * 109.49082 * 298.43099 * 18 17 16 37 37 H 1.09001 * 109.50065 * 178.37823 * 18 17 16 38 38 H 1.08994 * 110.01691 * 182.40822 * 20 19 18 39 39 H 1.09002 * 110.48657 * 335.78937 * 21 20 19 40 40 H 1.08997 * 110.48235 * 98.42870 * 21 20 19 41 41 H 1.09006 * 110.76050 * 279.62915 * 22 21 20 42 42 H 1.09002 * 110.75977 * 156.25969 * 22 21 20 43 43 H 1.08998 * 110.48763 * 203.37945 * 23 22 21 44 44 H 1.09002 * 110.48348 * 80.73768 * 23 22 21 45 45 H 1.08991 * 110.03444 * 238.56876 * 24 20 19 46 46 H 1.09005 * 110.03174 * 359.94956 * 24 20 19 47 47 H 1.09000 * 109.48946 * 299.35584 * 25 19 18 48 48 H 1.09001 * 109.48640 * 179.29226 * 25 19 18 49 49 H 1.08997 * 109.49175 * 303.15115 * 26 16 15 50 50 H 1.08997 * 109.48786 * 63.22408 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0711 -1.2216 0.1900 9 6 1.3229 -2.4239 -0.2471 10 6 0.1737 -2.4354 -1.0593 11 6 -0.4852 -3.6205 -1.2931 12 6 -0.0206 -4.8004 -0.7323 13 6 1.1103 -4.8009 0.0692 14 6 1.7847 -3.6270 0.3175 15 6 3.0136 -3.6306 1.1897 16 7 4.2112 -3.5009 0.3491 17 6 4.4602 -4.7362 -0.4071 18 6 5.6661 -4.5334 -1.3275 19 7 6.8388 -4.1677 -0.5207 20 6 8.0364 -4.0380 -1.3614 21 6 7.8270 -2.9277 -2.4118 22 6 8.5347 -3.4661 -3.6799 23 6 8.2040 -4.9787 -3.6398 24 6 8.2761 -5.3421 -2.1423 25 6 6.5898 -2.9325 0.2354 26 6 5.3838 -3.1352 1.1558 27 1 -0.4850 0.8401 0.0004 28 1 -0.1897 -1.5176 -1.4975 29 1 -1.3650 -3.6324 -1.9194 30 1 -0.5438 -5.7260 -0.9214 31 1 1.4631 -5.7257 0.5013 32 1 2.9667 -2.7940 1.8869 33 1 3.0606 -4.5660 1.7474 34 1 4.6650 -5.5519 0.2863 35 1 3.5824 -4.9792 -1.0059 36 1 5.4509 -3.7359 -2.0385 37 1 5.8706 -5.4574 -1.8683 38 1 8.9037 -3.8087 -0.7424 39 1 6.7642 -2.7783 -2.6023 40 1 8.2908 -1.9981 -2.0817 41 1 9.6111 -3.3043 -3.6199 42 1 8.1232 -3.0044 -4.5775 43 1 8.9428 -5.5459 -4.2059 44 1 7.2021 -5.1605 -4.0287 45 1 9.2600 -5.7452 -1.9028 46 1 7.5043 -6.0716 -1.8967 47 1 6.3850 -2.1167 -0.4580 48 1 7.4675 -2.6895 0.8342 49 1 5.1796 -2.2110 1.6963 50 1 5.5991 -3.9328 1.8668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235518995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:48 Heat of formation + Delta-G solvation = 23.899419 kcal Electronic energy + Delta-G solvation = -27301.210447 eV Core-core repulsion = 23906.190318 eV Total energy + Delta-G solvation = -3395.020128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.85809 -38.02346 -36.78621 -34.01292 -33.51288 -30.72101 -30.50826 -29.35812 -28.77388 -28.02866 -25.74591 -24.86656 -23.36474 -22.89425 -21.02974 -20.83395 -19.98315 -19.41125 -18.66537 -17.05748 -16.55990 -15.81437 -15.28385 -14.70727 -14.68079 -14.59290 -14.44284 -14.31571 -13.97388 -13.49780 -13.24053 -13.13552 -12.91187 -12.53272 -12.12159 -11.76039 -11.62650 -11.49914 -11.36001 -11.25381 -11.13491 -11.10130 -11.01655 -10.97925 -10.86640 -10.75077 -10.56800 -10.47681 -10.38212 -10.20552 -10.17286 -9.44770 -9.21725 -9.13657 -8.10535 -7.60251 -7.28801 -7.19480 -6.62640 -4.24897 2.82867 3.01739 3.12585 3.18313 3.29108 4.00792 4.01561 4.52007 4.55518 4.62103 4.78415 4.84194 5.18586 5.28931 5.36285 5.43504 5.48987 5.49944 5.55785 5.62582 5.70801 5.72627 5.78798 5.81944 5.83159 5.86695 5.98621 6.03532 6.07054 6.14828 6.19291 6.20882 6.28383 6.29530 6.34054 6.43283 6.47740 6.54672 6.59292 6.90801 7.19406 7.23748 7.25683 7.34579 7.45896 7.69248 7.71837 7.81119 8.01622 8.14903 8.23882 8.41053 8.77699 9.03728 9.10052 10.32246 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004409 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.956652 B = 6348.931035 C = 7385.219443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.131 3.869 10 C -0.159 4.159 11 C -0.109 4.109 12 C -0.242 4.242 13 C -0.090 4.090 14 C -0.188 4.188 15 C 0.128 3.872 16 N -0.522 5.522 17 C 0.063 3.937 18 C 0.054 3.946 19 N -0.532 5.532 20 C 0.082 3.918 21 C -0.162 4.162 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.121 4.121 25 C 0.059 3.941 26 C 0.058 3.942 27 H 0.276 0.724 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.211 -5.427 -2.829 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.475 4.475 8 H 0.109 0.891 9 C 0.129 3.871 10 C -0.178 4.178 11 C -0.128 4.128 12 C -0.261 4.261 13 C -0.109 4.109 14 C -0.190 4.190 15 C 0.002 3.998 16 N -0.246 5.246 17 C -0.065 4.065 18 C -0.074 4.074 19 N -0.256 5.256 20 C -0.027 4.027 21 C -0.201 4.201 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.159 4.159 25 C -0.070 4.070 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 14.024 -5.259 -2.776 15.233 hybrid contribution 0.179 0.844 0.003 0.863 sum 14.203 -4.414 -2.772 15.129 Atomic orbital electron populations 1.69826 1.07441 1.28620 1.37272 1.25939 0.94688 1.01137 0.92703 0.86340 0.81068 0.81466 0.78277 1.18435 1.20075 1.20287 1.19760 0.96779 0.89850 1.41150 0.89150 1.17376 0.90517 0.91625 0.87629 1.21369 0.98821 0.96316 1.01321 1.20679 0.98553 0.93672 0.99909 1.20298 1.01137 0.96478 1.08221 1.20376 0.96119 0.95654 0.98726 1.19513 0.99328 0.94078 1.06048 1.20592 0.87532 0.98446 0.93267 1.62155 1.02440 1.32745 1.27272 1.22072 0.97108 0.90840 0.96511 1.22239 0.89419 1.00390 0.95342 1.62452 1.03450 1.33320 1.26407 1.22353 0.93373 0.94144 0.92831 1.23095 1.01816 0.98942 0.96205 1.22415 1.00002 0.95648 0.97820 1.22382 1.01505 0.96085 0.96388 1.22257 1.01982 0.97424 0.94209 1.22114 0.97368 0.90958 0.96512 1.22110 0.90136 1.00284 0.94547 0.91320 0.86625 0.89797 0.89890 0.89998 0.90836 0.96631 0.95372 0.89889 0.93491 0.90740 0.90227 0.90485 0.91883 0.91769 0.91814 0.91901 0.91619 0.91791 0.90544 0.93620 0.91202 0.90527 0.95099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 10.92 55.55 0.61 -20.30 16 2 C 0.07 1.78 5.23 -17.34 -0.09 1.69 16 3 Si 0.90 18.95 29.58 -169.99 -5.03 13.92 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.45 -11.47 8.16 -37.74 -0.31 -11.77 16 8 H 0.09 2.29 6.75 -52.49 -0.35 1.93 16 9 C 0.13 3.40 5.54 -106.82 -0.59 2.81 16 10 C -0.16 -4.14 8.66 -38.87 -0.34 -4.48 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 12 C -0.24 -5.47 10.05 -39.29 -0.39 -5.86 16 13 C -0.09 -2.00 9.05 -39.66 -0.36 -2.36 16 14 C -0.19 -4.38 4.73 -103.91 -0.49 -4.87 16 15 C 0.13 2.59 4.31 -4.98 -0.02 2.57 16 16 N -0.52 -9.64 4.03 -235.91 -0.95 -10.59 16 17 C 0.06 1.07 5.44 -3.76 -0.02 1.05 16 18 C 0.05 0.79 4.94 -3.77 -0.02 0.77 16 19 N -0.53 -7.19 4.71 -225.15 -1.06 -8.25 16 20 C 0.08 0.93 3.07 -66.59 -0.20 0.73 16 21 C -0.16 -1.84 5.12 -25.07 -0.13 -1.97 16 22 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 23 C -0.13 -1.19 6.83 -25.07 -0.17 -1.36 16 24 C -0.12 -1.22 5.91 -25.61 -0.15 -1.37 16 25 C 0.06 0.83 5.32 -3.77 -0.02 0.81 16 26 C 0.06 0.92 5.59 -3.77 -0.02 0.90 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.12 3.14 6.29 -52.49 -0.33 2.81 16 29 H 0.08 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.08 1.64 8.00 -52.48 -0.42 1.22 16 32 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 33 H 0.02 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 36 H 0.05 0.76 6.12 -51.93 -0.32 0.44 16 37 H 0.07 0.99 6.01 -51.93 -0.31 0.67 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.04 5.63 -51.93 -0.29 0.75 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.84 6.11 -51.93 -0.32 0.52 16 47 H 0.05 0.71 7.20 -51.93 -0.37 0.33 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 1.22 8.02 -51.93 -0.42 0.80 16 50 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -26.47 373.58 -13.20 -39.67 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.49 Total: 7.00 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -3.90 Total: -27.07 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -1.41 Total: -39.15 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -26.47 -13.20 -39.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235518995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.568 kcal (2) G-P(sol) polarization free energy of solvation -26.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds