Wall clock time and date at job start Tue Mar 31 2020 11:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48503 * 109.46863 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47242 * 299.99996 * 3 2 1 6 6 H 1.48503 * 109.47024 * 60.00250 * 3 2 1 7 7 C 1.39943 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00449 * 191.68547 * 7 2 1 9 9 C 1.41402 * 119.99571 * 11.69241 * 7 2 1 10 10 C 1.40735 * 120.24398 * 29.16993 * 9 7 2 11 11 C 1.37601 * 119.74199 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.25000 * 359.97138 * 11 10 9 13 13 C 1.38611 * 120.50140 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.25223 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.13355 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.47351 * 104.50455 * 15 14 13 17 17 C 1.46959 * 110.99942 * 288.35460 * 16 15 14 18 18 C 1.53053 * 109.36084 * 176.80983 * 17 16 15 19 19 N 1.46956 * 109.36337 * 58.40239 * 18 17 16 20 20 C 1.46901 * 110.99871 * 176.80792 * 19 18 17 21 21 C 1.54268 * 110.03132 * 60.96374 * 20 19 18 22 22 C 1.54887 * 104.19596 * 217.10617 * 21 20 19 23 23 C 1.54886 * 102.74996 * 37.94406 * 22 21 20 24 24 C 1.53881 * 110.03404 * 303.79990 * 20 19 18 25 25 C 1.46950 * 110.88068 * 300.67642 * 19 18 17 26 26 C 1.46956 * 110.99871 * 164.55452 * 16 15 14 27 27 H 0.97007 * 119.99913 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.13015 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87096 * 180.25128 * 11 10 9 30 30 H 1.07996 * 119.75145 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.87878 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.47216 * 224.50589 * 15 14 13 33 33 H 1.09005 * 109.46831 * 344.50421 * 15 14 13 34 34 H 1.09000 * 109.48994 * 296.77632 * 17 16 15 35 35 H 1.09001 * 109.48758 * 56.84092 * 17 16 15 36 36 H 1.08993 * 109.49082 * 298.43099 * 18 17 16 37 37 H 1.09001 * 109.50065 * 178.37823 * 18 17 16 38 38 H 1.08994 * 110.01691 * 182.40822 * 20 19 18 39 39 H 1.09002 * 110.48657 * 335.78937 * 21 20 19 40 40 H 1.08997 * 110.48235 * 98.42870 * 21 20 19 41 41 H 1.09006 * 110.76050 * 279.62915 * 22 21 20 42 42 H 1.09002 * 110.75977 * 156.25969 * 22 21 20 43 43 H 1.08998 * 110.48763 * 203.37945 * 23 22 21 44 44 H 1.09002 * 110.48348 * 80.73768 * 23 22 21 45 45 H 1.08991 * 110.03444 * 238.56876 * 24 20 19 46 46 H 1.09005 * 110.03174 * 359.94956 * 24 20 19 47 47 H 1.09000 * 109.48946 * 299.35584 * 25 19 18 48 48 H 1.09001 * 109.48640 * 179.29226 * 25 19 18 49 49 H 1.08997 * 109.49175 * 303.15115 * 26 16 15 50 50 H 1.08997 * 109.48786 * 63.22408 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0711 -1.2216 0.1900 9 6 1.3229 -2.4239 -0.2471 10 6 0.1737 -2.4354 -1.0593 11 6 -0.4852 -3.6205 -1.2931 12 6 -0.0206 -4.8004 -0.7323 13 6 1.1103 -4.8009 0.0692 14 6 1.7847 -3.6270 0.3175 15 6 3.0136 -3.6306 1.1897 16 7 4.2112 -3.5009 0.3491 17 6 4.4602 -4.7362 -0.4071 18 6 5.6661 -4.5334 -1.3275 19 7 6.8388 -4.1677 -0.5207 20 6 8.0364 -4.0380 -1.3614 21 6 7.8270 -2.9277 -2.4118 22 6 8.5347 -3.4661 -3.6799 23 6 8.2040 -4.9787 -3.6398 24 6 8.2761 -5.3421 -2.1423 25 6 6.5898 -2.9325 0.2354 26 6 5.3838 -3.1352 1.1558 27 1 -0.4850 0.8401 0.0004 28 1 -0.1897 -1.5176 -1.4975 29 1 -1.3650 -3.6324 -1.9194 30 1 -0.5438 -5.7260 -0.9214 31 1 1.4631 -5.7257 0.5013 32 1 2.9667 -2.7940 1.8869 33 1 3.0606 -4.5660 1.7474 34 1 4.6650 -5.5519 0.2863 35 1 3.5824 -4.9792 -1.0059 36 1 5.4509 -3.7359 -2.0385 37 1 5.8706 -5.4574 -1.8683 38 1 8.9037 -3.8087 -0.7424 39 1 6.7642 -2.7783 -2.6023 40 1 8.2908 -1.9981 -2.0817 41 1 9.6111 -3.3043 -3.6199 42 1 8.1232 -3.0044 -4.5775 43 1 8.9428 -5.5459 -4.2059 44 1 7.2021 -5.1605 -4.0287 45 1 9.2600 -5.7452 -1.9028 46 1 7.5043 -6.0716 -1.8967 47 1 6.3850 -2.1167 -0.4580 48 1 7.4675 -2.6895 0.8342 49 1 5.1796 -2.2110 1.6963 50 1 5.5991 -3.9328 1.8668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235518995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:47 Heat of formation + Delta-G solvation = 11.114153 kcal Electronic energy + Delta-G solvation = -27301.764857 eV Core-core repulsion = 23906.190318 eV Total energy + Delta-G solvation = -3395.574539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.96981 -39.62979 -38.13515 -35.42105 -35.21212 -32.21032 -31.89779 -31.21686 -29.62845 -29.24444 -27.33920 -26.42809 -24.63913 -24.30541 -22.73940 -21.96027 -21.19788 -20.93110 -19.78278 -18.95754 -17.62097 -17.19429 -16.67083 -16.32488 -15.96393 -15.90830 -15.73407 -15.56179 -15.50416 -14.94877 -14.64368 -14.42314 -14.32495 -13.95552 -13.48859 -13.33907 -13.06534 -13.01002 -12.79651 -12.72347 -12.47877 -12.37759 -12.26792 -12.21655 -12.08347 -11.95801 -11.89300 -11.81146 -11.45924 -11.40791 -11.31425 -11.27896 -11.01842 -11.00475 -9.23857 -9.19829 -9.12004 -8.94941 -8.50244 -6.20605 1.02608 1.16036 1.38862 1.52458 1.53773 2.25119 2.84183 2.94676 3.17948 3.68596 3.78407 3.88221 3.96430 4.08997 4.16782 4.25056 4.35685 4.37551 4.46534 4.52402 4.55359 4.59107 4.62646 4.65906 4.67020 4.72103 4.76972 4.81556 4.83986 4.89424 4.95724 5.01705 5.03767 5.07338 5.11823 5.18614 5.23466 5.30494 5.33115 5.40735 5.44087 5.48310 5.58717 5.83956 6.04181 6.10501 6.16202 6.24512 6.30102 6.38931 6.41671 6.53573 6.84778 7.11737 7.18565 8.46543 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004409 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.956652 B = 6348.931035 C = 7385.219443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.030 3.970 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.102 3.898 10 C -0.189 4.189 11 C -0.118 4.118 12 C -0.239 4.239 13 C -0.094 4.094 14 C -0.189 4.189 15 C 0.137 3.863 16 N -0.538 5.538 17 C 0.068 3.932 18 C 0.065 3.935 19 N -0.531 5.531 20 C 0.080 3.920 21 C -0.160 4.160 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.064 3.936 26 C 0.059 3.941 27 H 0.281 0.719 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.028 0.972 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.469 -6.588 -2.714 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.208 4.208 11 C -0.136 4.136 12 C -0.259 4.259 13 C -0.112 4.112 14 C -0.191 4.191 15 C 0.010 3.990 16 N -0.263 5.263 17 C -0.060 4.060 18 C -0.063 4.063 19 N -0.255 5.255 20 C -0.028 4.028 21 C -0.200 4.200 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.064 4.064 26 C -0.069 4.069 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.289 -6.434 -2.665 17.716 hybrid contribution -0.545 1.085 -0.036 1.215 sum 15.745 -5.349 -2.702 16.846 Atomic orbital electron populations 1.69900 1.08778 1.29630 1.38360 1.26686 0.95373 1.04148 0.92014 0.85322 0.79648 0.77292 0.78438 1.18214 1.19711 1.19461 1.19872 0.96662 0.90725 1.42499 0.89531 1.17706 0.91053 0.92895 0.88376 1.21336 1.00175 0.96490 1.02847 1.20931 0.99035 0.93487 1.00177 1.20676 1.01023 0.97066 1.07101 1.20705 0.95792 0.96368 0.98380 1.19878 1.00153 0.93665 1.05419 1.20424 0.87448 0.98427 0.92702 1.62047 1.02811 1.33770 1.27688 1.22012 0.97238 0.90352 0.96436 1.22092 0.89218 1.00475 0.94557 1.62485 1.03578 1.32793 1.26608 1.22479 0.92548 0.94930 0.92822 1.23038 1.00316 0.99250 0.97350 1.22413 1.00674 0.95677 0.96734 1.22375 1.01501 0.96052 0.96212 1.22243 1.02607 0.96370 0.94270 1.22064 0.97421 0.90716 0.96174 1.22141 0.89741 1.00223 0.94788 0.90885 0.88778 0.87976 0.86932 0.87231 0.92300 0.95269 0.94715 0.92005 0.95523 0.89131 0.88994 0.93173 0.91780 0.90198 0.92006 0.90139 0.92671 0.90107 0.91373 0.95411 0.88831 0.90992 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.14 10.92 21.83 0.24 -44.91 16 2 C 0.03 1.55 5.23 85.26 0.45 2.00 16 3 Si 0.97 39.74 29.58 68.60 2.03 41.77 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.47 -24.92 8.16 23.46 0.19 -24.73 16 8 H 0.09 4.54 6.75 -2.91 -0.02 4.52 16 9 C 0.10 5.47 5.54 -21.29 -0.12 5.35 16 10 C -0.19 -10.21 8.66 22.73 0.20 -10.01 16 11 C -0.12 -5.64 10.02 22.22 0.22 -5.42 16 12 C -0.24 -10.51 10.05 22.46 0.23 -10.29 16 13 C -0.09 -4.07 9.05 22.22 0.20 -3.87 16 14 C -0.19 -8.90 4.73 -19.41 -0.09 -8.99 16 15 C 0.14 5.56 4.31 85.55 0.37 5.92 16 16 N -0.54 -19.91 4.03 -900.27 -3.63 -23.54 16 17 C 0.07 2.26 5.44 86.31 0.47 2.73 16 18 C 0.06 1.85 4.94 86.31 0.43 2.28 16 19 N -0.53 -13.50 4.71 -866.24 -4.08 -17.58 16 20 C 0.08 1.66 3.07 45.64 0.14 1.80 16 21 C -0.16 -3.47 5.12 31.67 0.16 -3.31 16 22 C -0.12 -2.04 6.91 31.88 0.22 -1.82 16 23 C -0.12 -2.05 6.83 31.67 0.22 -1.84 16 24 C -0.12 -2.06 5.91 31.32 0.19 -1.88 16 25 C 0.06 1.75 5.32 86.31 0.46 2.20 16 26 C 0.06 1.84 5.59 86.31 0.48 2.32 16 27 H 0.28 13.85 8.30 -92.70 -0.77 13.08 16 28 H 0.09 5.39 6.29 -2.91 -0.02 5.38 16 29 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.11 4.12 8.00 -2.91 -0.02 4.09 16 32 H 0.06 2.54 7.42 -2.39 -0.02 2.52 16 33 H 0.03 1.09 7.87 -2.38 -0.02 1.07 16 34 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 2.30 6.92 -2.39 -0.02 2.29 16 36 H 0.03 0.88 6.12 -2.39 -0.01 0.87 16 37 H 0.09 2.29 6.01 -2.39 -0.01 2.28 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.37 5.63 -2.39 -0.01 1.36 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.33 6.11 -2.38 -0.01 1.32 16 47 H 0.03 0.86 7.20 -2.39 -0.02 0.84 16 48 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.07 2.27 8.02 -2.39 -0.02 2.26 16 50 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -58.22 373.58 -0.14 -58.36 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.90 Total: 33.45 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 4.40 Total: -47.55 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -7.48 Total: -86.03 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -58.22 -0.14 -58.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235518995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.472 kcal (2) G-P(sol) polarization free energy of solvation -58.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds