Wall clock time and date at job start Tue Mar 31 2020 11:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47020 * 271.67512 * 3 2 1 5 5 H 1.48500 * 109.47152 * 31.66985 * 3 2 1 6 6 H 1.48504 * 109.47344 * 151.67510 * 3 2 1 7 7 C 1.39938 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00158 * 339.67407 * 7 2 1 9 9 C 1.41393 * 120.00240 * 159.67444 * 7 2 1 10 10 C 1.40740 * 120.24586 * 333.45262 * 9 7 2 11 11 C 1.37590 * 119.74730 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.25301 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.49716 * 359.67809 * 12 11 10 14 14 C 1.37643 * 120.25010 * 0.60474 * 13 12 11 15 15 C 1.50695 * 120.12976 * 179.69733 * 14 13 12 16 16 N 1.46894 * 109.47183 * 255.26381 * 15 14 13 17 17 C 1.48806 * 111.18458 * 58.09245 * 16 15 14 18 18 C 1.54939 * 103.35067 * 159.50819 * 17 16 15 19 19 C 1.54593 * 102.91807 * 322.68418 * 18 17 16 20 20 C 1.47898 * 111.00079 * 175.42640 * 16 15 14 21 21 H 1.09006 * 109.92127 * 333.70737 * 20 16 15 22 22 C 1.53003 * 109.91691 * 94.80261 * 20 16 15 23 23 N 1.46906 * 109.47166 * 182.52864 * 22 20 16 24 24 C 1.47840 * 110.99753 * 75.29333 * 23 22 20 25 25 C 1.54914 * 104.79613 * 146.36414 * 24 23 22 26 26 C 1.55145 * 101.65036 * 322.92868 * 25 24 23 27 27 C 1.47441 * 110.99953 * 196.13722 * 23 22 20 28 28 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.11951 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.87117 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.75386 * 179.97438 * 12 11 10 32 32 H 1.08003 * 119.87943 * 180.29842 * 13 12 11 33 33 H 1.09001 * 109.46843 * 135.26308 * 15 14 13 34 34 H 1.09000 * 109.47094 * 15.27020 * 15 14 13 35 35 H 1.09001 * 110.52228 * 41.07010 * 17 16 15 36 36 H 1.09007 * 110.69711 * 278.01891 * 17 16 15 37 37 H 1.09001 * 110.71974 * 204.33251 * 18 17 16 38 38 H 1.08994 * 110.72757 * 81.04626 * 18 17 16 39 39 H 1.08993 * 110.31596 * 263.04219 * 19 18 17 40 40 H 1.09002 * 110.39025 * 140.91890 * 19 18 17 41 41 H 1.09005 * 109.46979 * 62.53382 * 22 20 16 42 42 H 1.08992 * 109.47392 * 302.52829 * 22 20 16 43 43 H 1.09000 * 110.37398 * 27.53365 * 24 23 22 44 44 H 1.09002 * 110.37442 * 265.19441 * 24 23 22 45 45 H 1.09004 * 110.98668 * 204.84201 * 25 24 23 46 46 H 1.08994 * 110.98846 * 81.02261 * 25 24 23 47 47 H 1.08999 * 110.70469 * 154.03298 * 26 25 24 48 48 H 1.08997 * 110.70567 * 277.27177 * 26 25 24 49 49 H 1.09002 * 109.88978 * 117.34168 * 27 23 22 50 50 H 1.09003 * 109.89027 * 356.14845 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4542 2.0669 -1.3995 5 1 1.4577 2.6423 0.7351 6 1 3.5570 1.4304 0.6643 7 6 2.0080 -1.2118 0.0005 8 1 1.5185 -2.1180 0.3258 9 6 3.3559 -1.2501 -0.4248 10 6 3.8389 -0.2933 -1.3369 11 6 5.1525 -0.3399 -1.7435 12 6 5.9994 -1.3248 -1.2585 13 6 5.5362 -2.2686 -0.3551 14 6 4.2244 -2.2448 0.0610 15 6 3.7219 -3.2763 1.0380 16 7 2.9008 -4.2652 0.3269 17 6 3.6739 -4.9237 -0.7608 18 6 2.8862 -6.2330 -1.0174 19 6 2.4371 -6.6500 0.4019 20 6 2.4795 -5.3548 1.2339 21 1 3.1975 -5.4595 2.0474 22 6 1.0906 -5.0535 1.8005 23 7 0.7074 -6.1108 2.7458 24 6 1.4312 -5.9640 4.0266 25 6 0.4314 -6.4528 5.1042 26 6 -0.9157 -5.9249 4.5443 27 6 -0.7411 -6.0763 3.0185 28 1 -0.4851 0.8400 0.0004 29 1 3.1810 0.4750 -1.7156 30 1 5.5254 0.3936 -2.4431 31 1 7.0290 -1.3540 -1.5834 32 1 6.2058 -3.0285 0.0199 33 1 3.1201 -2.7879 1.8044 34 1 4.5696 -3.7768 1.5060 35 1 4.6886 -5.1439 -0.4290 36 1 3.6871 -4.3011 -1.6554 37 1 3.5332 -6.9927 -1.4559 38 1 2.0228 -6.0450 -1.6555 39 1 3.1249 -7.3877 0.8150 40 1 1.4237 -7.0507 0.3771 41 1 0.3667 -5.0143 0.9865 42 1 1.1091 -4.0939 2.3168 43 1 1.6925 -4.9197 4.1972 44 1 2.3266 -6.5856 4.0299 45 1 0.6531 -6.0064 6.0736 46 1 0.4280 -7.5409 5.1687 47 1 -1.7462 -6.5349 4.8995 48 1 -1.0616 -4.8789 4.8136 49 1 -1.2039 -7.0043 2.6826 50 1 -1.1946 -5.2270 2.5073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:03 Heat of formation + Delta-G solvation = 26.146833 kcal Electronic energy + Delta-G solvation = -27244.254528 eV Core-core repulsion = 23849.331855 eV Total energy + Delta-G solvation = -3394.922673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.41726 -38.33508 -37.28479 -33.55437 -32.72959 -32.09006 -30.29498 -29.37620 -28.92550 -28.30033 -25.50874 -24.56635 -23.69984 -21.34258 -21.27675 -20.94016 -20.64962 -19.33917 -19.27465 -17.25067 -16.13449 -15.90295 -15.65959 -15.24743 -14.87291 -14.37370 -14.20656 -14.01562 -13.67994 -13.46342 -13.15036 -12.87805 -12.81052 -12.46377 -12.39683 -12.06552 -12.03761 -11.63869 -11.52362 -11.41917 -11.30138 -11.12304 -10.97997 -10.70517 -10.70098 -10.68915 -10.58414 -10.51915 -10.27747 -10.21625 -10.10221 -9.65246 -9.34775 -9.02898 -8.19515 -7.73424 -7.57352 -7.45290 -6.90173 -4.37198 2.61915 2.74253 3.14797 3.23828 3.35307 3.97856 4.02472 4.52017 4.63382 4.67543 4.82698 5.01533 5.09170 5.16847 5.35720 5.36549 5.47916 5.56457 5.58529 5.67482 5.74147 5.78862 5.81896 5.87502 5.90713 5.95606 6.01145 6.04713 6.07140 6.12823 6.15553 6.21296 6.23498 6.28714 6.38561 6.40581 6.47249 6.59254 6.65639 6.76212 6.76730 7.00196 7.12744 7.22728 7.25458 7.48528 7.53070 7.73076 7.80802 7.85117 8.03999 8.22905 8.52391 8.80150 8.93620 10.10511 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.004654 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.990482 B = 6014.582683 C = 7411.937825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.084 3.916 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.428 4.428 8 H 0.109 0.891 9 C 0.110 3.890 10 C -0.249 4.249 11 C -0.076 4.076 12 C -0.254 4.254 13 C -0.072 4.072 14 C -0.185 4.185 15 C 0.120 3.880 16 N -0.495 5.495 17 C 0.049 3.951 18 C -0.127 4.127 19 C -0.110 4.110 20 C 0.074 3.926 21 H 0.041 0.959 22 C 0.068 3.932 23 N -0.529 5.529 24 C 0.041 3.959 25 C -0.129 4.129 26 C -0.142 4.142 27 C 0.042 3.958 28 H 0.283 0.717 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.016 0.984 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 -10.787 5.973 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.107 3.893 10 C -0.268 4.268 11 C -0.094 4.094 12 C -0.274 4.274 13 C -0.091 4.091 14 C -0.186 4.186 15 C -0.007 4.007 16 N -0.220 5.220 17 C -0.079 4.079 18 C -0.166 4.166 19 C -0.148 4.148 20 C -0.035 4.035 21 H 0.059 0.941 22 C -0.060 4.060 23 N -0.254 5.254 24 C -0.087 4.087 25 C -0.167 4.167 26 C -0.181 4.181 27 C -0.086 4.086 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.038 -10.879 5.568 12.221 hybrid contribution 0.848 1.358 0.593 1.707 sum 0.886 -9.522 6.161 11.376 Atomic orbital electron populations 1.69727 1.08101 1.30029 1.34746 1.26232 0.94620 1.01713 0.90991 0.86424 0.80933 0.80157 0.78811 1.19759 1.22280 1.17177 1.19732 0.93769 0.96484 1.35579 0.87300 1.17479 0.92606 0.89907 0.89318 1.21101 0.95992 1.04433 1.05303 1.20568 0.93990 0.96888 0.97998 1.20266 0.98376 1.01474 1.07256 1.20463 0.94733 0.97079 0.96800 1.19410 0.93084 1.01497 1.04649 1.20770 0.93527 0.91472 0.94948 1.64665 1.37449 1.10615 1.09229 1.23085 0.94422 0.94139 0.96233 1.22530 1.00077 0.96768 0.97177 1.22265 1.01870 0.96245 0.94429 1.22221 0.95627 0.91116 0.94538 0.94082 1.22237 0.96955 0.91542 0.95297 1.63470 1.04445 1.46916 1.10587 1.23080 0.97319 0.99869 0.88426 1.22698 0.94797 1.01096 0.98100 1.22780 0.97892 1.01345 0.96078 1.22799 0.89207 1.01602 0.94945 0.90675 0.88274 0.89319 0.89341 0.89532 0.90731 0.96604 0.94770 0.90003 0.91988 0.91068 0.92553 0.90705 0.90172 0.94022 0.93475 0.90674 0.91211 0.90938 0.91057 0.91503 0.90800 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.11 13.93 55.55 0.77 -20.33 16 2 C 0.08 2.17 5.39 -17.35 -0.09 2.07 16 3 Si 0.91 21.00 24.54 -169.99 -4.17 16.83 16 4 H -0.27 -6.16 6.47 56.52 0.37 -5.80 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.25 -5.91 7.03 56.52 0.40 -5.51 16 7 C -0.43 -11.23 8.72 -37.75 -0.33 -11.56 16 8 H 0.11 3.00 6.85 -52.48 -0.36 2.64 16 9 C 0.11 2.76 5.17 -106.82 -0.55 2.21 16 10 C -0.25 -6.11 7.33 -38.87 -0.28 -6.39 16 11 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 12 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 13 C -0.07 -1.51 9.44 -39.66 -0.37 -1.89 16 14 C -0.18 -4.15 4.48 -103.91 -0.47 -4.62 16 15 C 0.12 2.40 4.17 -4.98 -0.02 2.38 16 16 N -0.50 -9.27 4.38 -223.76 -0.98 -10.25 16 17 C 0.05 0.85 5.58 -1.74 -0.01 0.84 16 18 C -0.13 -1.85 7.07 -24.87 -0.18 -2.02 16 19 C -0.11 -1.55 6.35 -25.37 -0.16 -1.72 16 20 C 0.07 1.18 2.57 -66.64 -0.17 1.01 16 21 H 0.04 0.66 7.17 -51.93 -0.37 0.29 16 22 C 0.07 1.08 4.22 -3.82 -0.02 1.07 16 23 N -0.53 -7.14 4.75 -231.24 -1.10 -8.24 16 24 C 0.04 0.50 6.05 -2.30 -0.01 0.49 16 25 C -0.13 -1.30 7.08 -24.59 -0.17 -1.47 16 26 C -0.14 -1.49 6.94 -24.90 -0.17 -1.66 16 27 C 0.04 0.52 6.84 -2.84 -0.02 0.50 16 28 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.10 2.45 4.34 -52.48 -0.23 2.22 16 30 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.63 8.00 -52.48 -0.42 1.21 16 33 H 0.07 1.59 7.60 -51.93 -0.39 1.19 16 34 H 0.02 0.30 7.78 -51.93 -0.40 -0.11 16 35 H 0.03 0.57 8.02 -51.93 -0.42 0.16 16 36 H 0.08 1.58 7.97 -51.92 -0.41 1.17 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.06 7.57 -51.93 -0.39 0.66 16 41 H 0.08 1.39 7.85 -51.93 -0.41 0.98 16 42 H 0.04 0.75 7.67 -51.93 -0.40 0.35 16 43 H 0.05 0.63 7.52 -51.93 -0.39 0.24 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -26.44 379.18 -12.40 -38.84 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.81 Total: 6.10 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -3.83 Total: -28.65 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -1.31 Total: -38.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.17 Total: 16.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.44 -12.40 -38.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.986 kcal (2) G-P(sol) polarization free energy of solvation -26.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds