Wall clock time and date at job start Tue Mar 31 2020 11:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47020 * 271.67512 * 3 2 1 5 5 H 1.48500 * 109.47152 * 31.66985 * 3 2 1 6 6 H 1.48504 * 109.47344 * 151.67510 * 3 2 1 7 7 C 1.39938 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00158 * 339.67407 * 7 2 1 9 9 C 1.41393 * 120.00240 * 159.67444 * 7 2 1 10 10 C 1.40740 * 120.24586 * 333.45262 * 9 7 2 11 11 C 1.37590 * 119.74730 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.25301 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.49716 * 359.67809 * 12 11 10 14 14 C 1.37643 * 120.25010 * 0.60474 * 13 12 11 15 15 C 1.50695 * 120.12976 * 179.69733 * 14 13 12 16 16 N 1.46894 * 109.47183 * 255.26381 * 15 14 13 17 17 C 1.48806 * 111.18458 * 58.09245 * 16 15 14 18 18 C 1.54939 * 103.35067 * 159.50819 * 17 16 15 19 19 C 1.54593 * 102.91807 * 322.68418 * 18 17 16 20 20 C 1.47898 * 111.00079 * 175.42640 * 16 15 14 21 21 H 1.09006 * 109.92127 * 333.70737 * 20 16 15 22 22 C 1.53003 * 109.91691 * 94.80261 * 20 16 15 23 23 N 1.46906 * 109.47166 * 182.52864 * 22 20 16 24 24 C 1.47840 * 110.99753 * 75.29333 * 23 22 20 25 25 C 1.54914 * 104.79613 * 146.36414 * 24 23 22 26 26 C 1.55145 * 101.65036 * 322.92868 * 25 24 23 27 27 C 1.47441 * 110.99953 * 196.13722 * 23 22 20 28 28 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.11951 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.87117 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.75386 * 179.97438 * 12 11 10 32 32 H 1.08003 * 119.87943 * 180.29842 * 13 12 11 33 33 H 1.09001 * 109.46843 * 135.26308 * 15 14 13 34 34 H 1.09000 * 109.47094 * 15.27020 * 15 14 13 35 35 H 1.09001 * 110.52228 * 41.07010 * 17 16 15 36 36 H 1.09007 * 110.69711 * 278.01891 * 17 16 15 37 37 H 1.09001 * 110.71974 * 204.33251 * 18 17 16 38 38 H 1.08994 * 110.72757 * 81.04626 * 18 17 16 39 39 H 1.08993 * 110.31596 * 263.04219 * 19 18 17 40 40 H 1.09002 * 110.39025 * 140.91890 * 19 18 17 41 41 H 1.09005 * 109.46979 * 62.53382 * 22 20 16 42 42 H 1.08992 * 109.47392 * 302.52829 * 22 20 16 43 43 H 1.09000 * 110.37398 * 27.53365 * 24 23 22 44 44 H 1.09002 * 110.37442 * 265.19441 * 24 23 22 45 45 H 1.09004 * 110.98668 * 204.84201 * 25 24 23 46 46 H 1.08994 * 110.98846 * 81.02261 * 25 24 23 47 47 H 1.08999 * 110.70469 * 154.03298 * 26 25 24 48 48 H 1.08997 * 110.70567 * 277.27177 * 26 25 24 49 49 H 1.09002 * 109.88978 * 117.34168 * 27 23 22 50 50 H 1.09003 * 109.89027 * 356.14845 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4542 2.0669 -1.3995 5 1 1.4577 2.6423 0.7351 6 1 3.5570 1.4304 0.6643 7 6 2.0080 -1.2118 0.0005 8 1 1.5185 -2.1180 0.3258 9 6 3.3559 -1.2501 -0.4248 10 6 3.8389 -0.2933 -1.3369 11 6 5.1525 -0.3399 -1.7435 12 6 5.9994 -1.3248 -1.2585 13 6 5.5362 -2.2686 -0.3551 14 6 4.2244 -2.2448 0.0610 15 6 3.7219 -3.2763 1.0380 16 7 2.9008 -4.2652 0.3269 17 6 3.6739 -4.9237 -0.7608 18 6 2.8862 -6.2330 -1.0174 19 6 2.4371 -6.6500 0.4019 20 6 2.4795 -5.3548 1.2339 21 1 3.1975 -5.4595 2.0474 22 6 1.0906 -5.0535 1.8005 23 7 0.7074 -6.1108 2.7458 24 6 1.4312 -5.9640 4.0266 25 6 0.4314 -6.4528 5.1042 26 6 -0.9157 -5.9249 4.5443 27 6 -0.7411 -6.0763 3.0185 28 1 -0.4851 0.8400 0.0004 29 1 3.1810 0.4750 -1.7156 30 1 5.5254 0.3936 -2.4431 31 1 7.0290 -1.3540 -1.5834 32 1 6.2058 -3.0285 0.0199 33 1 3.1201 -2.7879 1.8044 34 1 4.5696 -3.7768 1.5060 35 1 4.6886 -5.1439 -0.4290 36 1 3.6871 -4.3011 -1.6554 37 1 3.5332 -6.9927 -1.4559 38 1 2.0228 -6.0450 -1.6555 39 1 3.1249 -7.3877 0.8150 40 1 1.4237 -7.0507 0.3771 41 1 0.3667 -5.0143 0.9865 42 1 1.1091 -4.0939 2.3168 43 1 1.6925 -4.9197 4.1972 44 1 2.3266 -6.5856 4.0299 45 1 0.6531 -6.0064 6.0736 46 1 0.4280 -7.5409 5.1687 47 1 -1.7462 -6.5349 4.8995 48 1 -1.0616 -4.8789 4.8136 49 1 -1.2039 -7.0043 2.6826 50 1 -1.1946 -5.2270 2.5073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235522256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:02 Heat of formation + Delta-G solvation = 11.917737 kcal Electronic energy + Delta-G solvation = -27244.871548 eV Core-core repulsion = 23849.331855 eV Total energy + Delta-G solvation = -3395.539693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.73790 -39.73264 -38.75758 -35.46088 -34.15927 -33.31275 -32.14625 -30.90338 -29.96678 -29.48020 -27.26093 -26.08338 -25.13483 -23.17039 -22.25986 -22.24365 -21.79799 -20.97567 -20.56320 -19.15616 -17.60946 -17.19778 -16.90521 -16.61527 -16.30721 -15.99926 -15.82275 -15.52216 -15.16381 -14.61949 -14.54402 -14.44290 -14.10073 -13.95519 -13.80012 -13.64780 -13.45336 -13.09256 -13.06190 -12.74741 -12.57738 -12.51352 -12.24779 -12.20519 -12.08699 -12.01993 -11.96410 -11.89274 -11.59865 -11.51778 -11.49594 -11.32199 -11.13966 -10.88795 -9.42192 -9.38364 -9.29513 -9.07219 -8.83286 -6.34401 0.81895 0.91338 1.25625 1.39454 1.47597 2.12600 2.64946 2.81358 3.39682 3.68039 3.71606 3.79776 3.83531 3.89836 4.07751 4.12781 4.25075 4.29545 4.34070 4.38611 4.46408 4.50996 4.54788 4.56597 4.61415 4.70180 4.76533 4.78717 4.85585 4.91973 4.94654 4.97738 5.00441 5.04955 5.07310 5.11343 5.14937 5.15503 5.18279 5.31567 5.33824 5.42055 5.45136 5.70062 5.88799 6.00057 6.03007 6.03963 6.13793 6.26435 6.34667 6.41168 6.56498 6.91795 6.97596 8.22500 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.004654 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.990482 B = 6014.582683 C = 7411.937825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.048 3.952 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.080 0.920 9 C 0.090 3.910 10 C -0.270 4.270 11 C -0.086 4.086 12 C -0.238 4.238 13 C -0.075 4.075 14 C -0.186 4.186 15 C 0.129 3.871 16 N -0.520 5.520 17 C 0.050 3.950 18 C -0.119 4.119 19 C -0.100 4.100 20 C 0.078 3.922 21 H 0.045 0.955 22 C 0.082 3.918 23 N -0.525 5.525 24 C 0.036 3.964 25 C -0.119 4.119 26 C -0.139 4.139 27 C 0.036 3.964 28 H 0.289 0.711 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.007 0.993 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -12.570 6.266 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.166 4.166 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.087 3.913 10 C -0.289 4.289 11 C -0.104 4.104 12 C -0.257 4.257 13 C -0.094 4.094 14 C -0.187 4.187 15 C 0.002 3.998 16 N -0.245 5.245 17 C -0.077 4.077 18 C -0.157 4.157 19 C -0.138 4.138 20 C -0.031 4.031 21 H 0.063 0.937 22 C -0.047 4.047 23 N -0.250 5.250 24 C -0.092 4.092 25 C -0.157 4.157 26 C -0.178 4.178 27 C -0.091 4.091 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.074 0.926 49 H 0.107 0.893 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.550 -12.668 5.859 14.188 hybrid contribution 0.239 1.810 0.464 1.884 sum 2.789 -10.858 6.323 12.871 Atomic orbital electron populations 1.69761 1.09019 1.30908 1.37339 1.26778 0.95140 1.03877 0.90825 0.85643 0.79309 0.77607 0.78928 1.19098 1.21019 1.18384 1.19628 0.94915 0.95955 1.37779 0.90239 1.17679 0.92494 0.91229 0.89884 1.21218 0.97288 1.04554 1.05856 1.20929 0.93155 0.97936 0.98356 1.20770 0.99768 0.99793 1.05334 1.20819 0.94322 0.97784 0.96490 1.19750 0.93688 1.00999 1.04309 1.20595 0.93752 0.91498 0.94000 1.64551 1.37846 1.11780 1.10303 1.23046 0.95312 0.94777 0.94591 1.22495 0.99815 0.96024 0.97363 1.22203 1.02490 0.95309 0.93761 1.22216 0.95072 0.91270 0.94512 0.93692 1.21996 0.96878 0.90892 0.94910 1.63542 1.05398 1.45046 1.10983 1.23168 0.98327 0.99124 0.88575 1.22688 0.93290 1.02002 0.97742 1.22774 0.99198 1.01282 0.94504 1.22905 0.88370 1.01453 0.96409 0.90067 0.89142 0.86483 0.85783 0.86394 0.93323 0.94699 0.93574 0.92702 0.89025 0.92165 0.90383 0.90707 0.92412 0.97475 0.95354 0.89675 0.89849 0.89388 0.88759 0.92600 0.89308 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.03 13.93 21.82 0.30 -46.73 16 2 C 0.05 2.64 5.39 85.26 0.46 3.10 16 3 Si 0.96 44.57 24.54 68.60 1.68 46.25 16 4 H -0.26 -11.88 6.47 99.48 0.64 -11.24 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -12.37 7.03 99.48 0.70 -11.67 16 7 C -0.45 -25.31 8.72 23.46 0.20 -25.10 16 8 H 0.08 4.78 6.85 -2.91 -0.02 4.76 16 9 C 0.09 4.62 5.17 -21.29 -0.11 4.51 16 10 C -0.27 -13.21 7.33 22.73 0.17 -13.04 16 11 C -0.09 -3.61 10.02 22.22 0.22 -3.39 16 12 C -0.24 -9.19 10.05 22.46 0.23 -8.96 16 13 C -0.08 -2.97 9.44 22.22 0.21 -2.76 16 14 C -0.19 -8.33 4.48 -19.40 -0.09 -8.42 16 15 C 0.13 5.25 4.17 85.56 0.36 5.60 16 16 N -0.52 -19.96 4.38 -861.86 -3.78 -23.73 16 17 C 0.05 1.70 5.58 86.60 0.48 2.18 16 18 C -0.12 -3.26 7.07 31.80 0.22 -3.04 16 19 C -0.10 -2.65 6.35 31.47 0.20 -2.45 16 20 C 0.08 2.51 2.57 45.06 0.12 2.62 16 21 H 0.05 1.41 7.17 -2.38 -0.02 1.39 16 22 C 0.08 2.79 4.22 86.30 0.36 3.16 16 23 N -0.53 -14.28 4.75 -885.51 -4.21 -18.48 16 24 C 0.04 0.85 6.05 86.78 0.53 1.38 16 25 C -0.12 -2.19 7.08 31.98 0.23 -1.96 16 26 C -0.14 -2.78 6.94 31.78 0.22 -2.56 16 27 C 0.04 0.89 6.84 86.65 0.59 1.49 16 28 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 29 H 0.09 4.52 4.34 -2.91 -0.01 4.51 16 30 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.12 3.92 8.00 -2.91 -0.02 3.90 16 33 H 0.05 2.21 7.60 -2.39 -0.02 2.19 16 34 H 0.04 1.26 7.78 -2.39 -0.02 1.24 16 35 H 0.05 1.43 8.02 -2.39 -0.02 1.42 16 36 H 0.05 2.13 7.97 -2.38 -0.02 2.11 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.02 7.57 -2.39 -0.02 2.00 16 41 H 0.06 2.18 7.85 -2.38 -0.02 2.16 16 42 H 0.01 0.28 7.67 -2.39 -0.02 0.26 16 43 H 0.03 0.78 7.52 -2.39 -0.02 0.76 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.04 1.06 7.46 -2.39 -0.02 1.04 16 Total: -1.00 -60.00 379.18 -0.57 -60.58 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.82 Total: 29.77 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 4.60 Total: -47.66 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -7.68 Total: -88.94 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.68 Total: 46.25 kcal Total: -60.00 -0.57 -60.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.497 kcal (2) G-P(sol) polarization free energy of solvation -60.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds