Wall clock time and date at job start Tue Mar 31 2020 11:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99923 * 3 2 1 5 5 H 1.48501 * 109.46859 * 30.00090 * 3 2 1 6 6 H 1.48498 * 109.47261 * 150.00022 * 3 2 1 7 7 C 1.39948 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99788 * 164.16441 * 7 2 1 9 9 C 1.41395 * 120.00324 * 344.15942 * 7 2 1 10 10 C 1.40741 * 120.24112 * 333.24989 * 9 7 2 11 11 C 1.37594 * 119.74438 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.24790 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50051 * 359.68347 * 12 11 10 14 14 C 1.37640 * 120.24851 * 0.59339 * 13 12 11 15 15 C 1.50695 * 120.12790 * 179.69978 * 14 13 12 16 16 N 1.46906 * 109.46824 * 103.11664 * 15 14 13 17 17 C 1.48538 * 110.99919 * 282.31188 * 16 15 14 18 18 C 1.54936 * 103.22856 * 200.28112 * 17 16 15 19 19 C 1.54599 * 102.92199 * 37.41161 * 18 17 16 20 20 H 1.09002 * 110.38972 * 97.00426 * 19 18 17 21 21 N 1.46896 * 110.30918 * 219.13075 * 19 18 17 22 22 C 1.46858 * 110.99697 * 182.69646 * 21 19 18 23 23 C 1.53033 * 109.52051 * 185.83854 * 22 21 19 24 24 C 1.53121 * 109.27783 * 300.81813 * 23 22 21 25 25 C 1.53119 * 109.21406 * 57.62713 * 24 23 22 26 26 C 1.46843 * 111.00123 * 306.90027 * 21 19 18 27 27 C 1.47903 * 110.99815 * 164.91611 * 16 15 14 28 28 H 0.96996 * 119.99874 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12870 * 359.95105 * 10 9 7 30 30 H 1.08003 * 119.87871 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.74831 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.87424 * 180.30381 * 13 12 11 33 33 H 1.09001 * 109.47472 * 343.12075 * 15 14 13 34 34 H 1.08998 * 109.47359 * 223.11339 * 15 14 13 35 35 H 1.09007 * 110.66436 * 318.71664 * 17 16 15 36 36 H 1.09000 * 110.66629 * 81.67463 * 17 16 15 37 37 H 1.09003 * 110.72290 * 279.05693 * 18 17 16 38 38 H 1.08997 * 110.72785 * 155.77194 * 18 17 16 39 39 H 1.08994 * 109.46065 * 65.82095 * 22 21 19 40 40 H 1.08996 * 109.44754 * 305.84499 * 22 21 19 41 41 H 1.09000 * 109.50718 * 180.87995 * 23 22 21 42 42 H 1.09003 * 109.50613 * 60.75866 * 23 22 21 43 43 H 1.09001 * 109.52254 * 177.56093 * 24 23 22 44 44 H 1.08996 * 109.52113 * 297.68852 * 24 23 22 45 45 H 1.08996 * 109.50550 * 62.31937 * 25 24 23 46 46 H 1.09004 * 109.50314 * 182.43728 * 25 24 23 47 47 H 1.08998 * 109.46518 * 294.18165 * 26 21 19 48 48 H 1.09007 * 109.46344 * 54.15433 * 26 21 19 49 49 H 1.08996 * 109.91789 * 26.49431 * 27 16 15 50 50 H 1.08992 * 110.08220 * 265.28676 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0572 -1.2296 -0.2558 9 6 1.3412 -2.4134 0.3332 10 6 0.2140 -2.3882 1.1754 11 6 -0.4273 -3.5634 1.4931 12 6 0.0335 -4.7694 0.9872 13 6 1.1391 -4.8055 0.1520 14 6 1.7996 -3.6429 -0.1746 15 6 3.0054 -3.6861 -1.0774 16 7 2.6258 -3.2356 -2.4232 17 6 1.9086 -4.3071 -3.1606 18 6 2.0634 -3.8823 -4.6425 19 6 3.4965 -3.3044 -4.6887 20 1 4.1984 -4.0575 -5.0470 21 7 3.5398 -2.1166 -5.5519 22 6 4.9075 -1.5924 -5.6576 23 6 4.8923 -0.2780 -6.4412 24 6 4.3121 -0.5277 -7.8361 25 6 2.9065 -1.1193 -7.6987 26 6 2.9792 -2.4085 -6.8773 27 6 3.8222 -2.9197 -3.2335 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1461 -1.4501 1.5712 30 1 -1.2923 -3.5465 2.1396 31 1 -0.4758 -5.6871 1.2421 32 1 1.4864 -5.7498 -0.2403 33 1 3.3841 -4.7068 -1.1294 34 1 3.7805 -3.0307 -0.6801 35 1 2.3791 -5.2750 -2.9867 36 1 0.8575 -4.3346 -2.8733 37 1 1.3309 -3.1184 -4.9033 38 1 1.9740 -4.7451 -5.3025 39 1 5.5351 -2.3172 -6.1762 40 1 5.3065 -1.4153 -4.6589 41 1 5.9094 0.1028 -6.5330 42 1 4.2759 0.4517 -5.9160 43 1 4.2592 0.4139 -8.3825 44 1 4.9504 -1.2269 -8.3762 45 1 2.2581 -0.4033 -7.1940 46 1 2.5060 -1.3392 -8.6884 47 1 3.6158 -3.1295 -7.3902 48 1 1.9777 -2.8241 -6.7646 49 1 4.6746 -3.4986 -2.8783 50 1 4.0453 -1.8547 -3.1720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:55 Heat of formation + Delta-G solvation = 23.807501 kcal Electronic energy + Delta-G solvation = -27097.795425 eV Core-core repulsion = 23702.771311 eV Total energy + Delta-G solvation = -3395.024114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.63602 -38.00883 -36.90915 -33.60042 -33.45009 -31.30649 -30.92576 -29.37473 -28.97186 -27.65549 -25.38381 -24.31574 -23.55469 -22.98633 -20.88808 -20.47227 -20.02325 -19.61434 -19.31424 -17.03543 -16.63672 -15.58369 -15.17802 -14.88830 -14.55975 -14.50127 -14.21867 -14.01329 -13.72694 -13.53386 -13.41521 -13.17443 -12.70074 -12.47425 -12.36655 -12.11902 -11.93643 -11.46191 -11.34211 -11.25762 -11.12159 -11.05057 -10.96010 -10.93450 -10.78634 -10.54273 -10.53516 -10.46841 -10.32272 -10.25502 -10.22117 -9.38897 -9.17188 -9.00541 -8.19572 -7.57023 -7.24625 -7.20263 -6.58697 -4.15206 2.90335 3.06834 3.16739 3.20374 3.35796 3.89663 4.07024 4.65716 4.72506 4.75911 4.82700 4.87028 4.94265 5.14061 5.22748 5.38051 5.40082 5.46393 5.55866 5.60634 5.65774 5.73143 5.79043 5.83552 5.88202 5.89383 5.94812 6.06601 6.07567 6.09619 6.16869 6.20916 6.28696 6.33727 6.38185 6.44592 6.49451 6.58464 6.60333 6.90036 7.20043 7.23571 7.27788 7.37385 7.49598 7.63657 7.74949 7.84961 8.04359 8.18884 8.22013 8.45788 8.78098 9.06853 9.13466 10.36844 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.004565 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.160485 B = 6132.646989 C = 7666.245812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.079 3.921 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.434 4.434 8 H 0.075 0.925 9 C 0.133 3.867 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.249 4.249 13 C -0.086 4.086 14 C -0.190 4.190 15 C 0.120 3.880 16 N -0.482 5.482 17 C 0.044 3.956 18 C -0.116 4.116 19 C 0.078 3.922 20 H 0.038 0.962 21 N -0.523 5.523 22 C 0.055 3.945 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.117 4.117 26 C 0.055 3.945 27 C 0.045 3.955 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.015 0.985 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.025 0.975 48 H 0.078 0.922 49 H 0.031 0.969 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -2.498 -12.692 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.130 3.870 10 C -0.185 4.185 11 C -0.125 4.125 12 C -0.268 4.268 13 C -0.105 4.105 14 C -0.192 4.192 15 C -0.007 4.007 16 N -0.206 5.206 17 C -0.084 4.084 18 C -0.155 4.155 19 C -0.031 4.031 20 H 0.056 0.944 21 N -0.248 5.248 22 C -0.073 4.073 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.073 4.073 27 C -0.083 4.083 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.097 0.903 49 H 0.049 0.951 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.697 -1.502 -12.415 14.186 hybrid contribution 1.273 -0.616 -0.529 1.510 sum 7.970 -2.118 -12.944 15.348 Atomic orbital electron populations 1.69830 1.07472 1.28728 1.36105 1.25813 0.94593 1.00897 0.92468 0.86444 0.80562 0.81319 0.79160 1.19461 1.20452 1.18759 1.19400 0.97090 0.90541 1.39284 0.90678 1.17339 0.90522 0.91511 0.87666 1.21305 0.99558 0.96470 1.01154 1.20655 0.98480 0.93522 0.99793 1.20260 1.01949 0.96102 1.08507 1.20329 0.96070 0.95646 0.98469 1.19360 1.01488 0.93727 1.04631 1.20772 0.96190 0.95757 0.87953 1.64830 1.18365 1.36368 1.00992 1.23132 1.00767 0.92538 0.91982 1.22612 0.96153 0.99888 0.96805 1.22482 0.97049 0.89954 0.93587 0.94399 1.61985 1.20394 1.30714 1.11671 1.22092 0.89016 0.95782 1.00424 1.21584 1.00763 0.97595 0.95584 1.21566 0.96625 1.00515 0.97035 1.21589 0.97282 0.97548 0.99105 1.22085 1.00046 0.96383 0.88771 1.22904 0.92587 1.02006 0.90807 0.91251 0.86719 0.89841 0.89986 0.90162 0.96651 0.91398 0.95071 0.89855 0.89567 0.92096 0.95559 0.90434 0.91857 0.90777 0.92070 0.92684 0.90847 0.91898 0.95654 0.90343 0.95058 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.06 10.99 55.55 0.61 -20.45 16 2 C 0.08 2.02 5.16 -17.34 -0.09 1.93 16 3 Si 0.90 19.28 29.59 -169.99 -5.03 14.25 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.43 -11.39 8.43 -37.74 -0.32 -11.71 16 8 H 0.08 1.93 6.57 -52.49 -0.35 1.58 16 9 C 0.13 3.50 5.55 -106.82 -0.59 2.91 16 10 C -0.17 -4.37 8.68 -38.87 -0.34 -4.71 16 11 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.25 -5.73 10.05 -39.29 -0.39 -6.12 16 13 C -0.09 -1.96 9.65 -39.66 -0.38 -2.34 16 14 C -0.19 -4.53 5.20 -103.92 -0.54 -5.07 16 15 C 0.12 2.48 4.22 -4.97 -0.02 2.46 16 16 N -0.48 -9.49 5.17 -231.88 -1.20 -10.69 16 17 C 0.04 0.77 6.27 -1.90 -0.01 0.76 16 18 C -0.12 -1.70 5.36 -24.87 -0.13 -1.84 16 19 C 0.08 1.12 2.73 -66.35 -0.18 0.93 16 20 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 21 N -0.52 -7.16 4.42 -225.06 -1.00 -8.15 16 22 C 0.05 0.66 5.26 -3.83 -0.02 0.64 16 23 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 24 C -0.12 -1.17 6.00 -26.61 -0.16 -1.32 16 25 C -0.12 -1.23 6.10 -26.65 -0.16 -1.40 16 26 C 0.05 0.64 5.17 -3.83 -0.02 0.63 16 27 C 0.05 0.76 5.77 -2.75 -0.02 0.74 16 28 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 29 H 0.11 3.13 6.26 -52.49 -0.33 2.81 16 30 H 0.08 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.08 1.63 8.01 -52.49 -0.42 1.21 16 33 H 0.02 0.29 7.54 -51.93 -0.39 -0.10 16 34 H 0.07 1.42 6.79 -51.93 -0.35 1.07 16 35 H 0.03 0.51 7.74 -51.92 -0.40 0.11 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.09 1.38 7.26 -51.93 -0.38 1.00 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.98 6.63 -51.93 -0.34 0.63 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.93 6.28 -51.93 -0.33 0.60 16 49 H 0.03 0.48 7.77 -51.93 -0.40 0.08 16 50 H 0.09 1.53 6.85 -51.93 -0.36 1.18 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -27.70 378.91 -13.52 -41.23 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.68 Total: 6.02 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -3.94 Total: -27.91 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -1.58 Total: -39.30 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.70 -13.52 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.033 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds