Wall clock time and date at job start Tue Mar 31 2020 11:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99923 * 3 2 1 5 5 H 1.48501 * 109.46859 * 30.00090 * 3 2 1 6 6 H 1.48498 * 109.47261 * 150.00022 * 3 2 1 7 7 C 1.39948 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99788 * 164.16441 * 7 2 1 9 9 C 1.41395 * 120.00324 * 344.15942 * 7 2 1 10 10 C 1.40741 * 120.24112 * 333.24989 * 9 7 2 11 11 C 1.37594 * 119.74438 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.24790 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50051 * 359.68347 * 12 11 10 14 14 C 1.37640 * 120.24851 * 0.59339 * 13 12 11 15 15 C 1.50695 * 120.12790 * 179.69978 * 14 13 12 16 16 N 1.46906 * 109.46824 * 103.11664 * 15 14 13 17 17 C 1.48538 * 110.99919 * 282.31188 * 16 15 14 18 18 C 1.54936 * 103.22856 * 200.28112 * 17 16 15 19 19 C 1.54599 * 102.92199 * 37.41161 * 18 17 16 20 20 H 1.09002 * 110.38972 * 97.00426 * 19 18 17 21 21 N 1.46896 * 110.30918 * 219.13075 * 19 18 17 22 22 C 1.46858 * 110.99697 * 182.69646 * 21 19 18 23 23 C 1.53033 * 109.52051 * 185.83854 * 22 21 19 24 24 C 1.53121 * 109.27783 * 300.81813 * 23 22 21 25 25 C 1.53119 * 109.21406 * 57.62713 * 24 23 22 26 26 C 1.46843 * 111.00123 * 306.90027 * 21 19 18 27 27 C 1.47903 * 110.99815 * 164.91611 * 16 15 14 28 28 H 0.96996 * 119.99874 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12870 * 359.95105 * 10 9 7 30 30 H 1.08003 * 119.87871 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.74831 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.87424 * 180.30381 * 13 12 11 33 33 H 1.09001 * 109.47472 * 343.12075 * 15 14 13 34 34 H 1.08998 * 109.47359 * 223.11339 * 15 14 13 35 35 H 1.09007 * 110.66436 * 318.71664 * 17 16 15 36 36 H 1.09000 * 110.66629 * 81.67463 * 17 16 15 37 37 H 1.09003 * 110.72290 * 279.05693 * 18 17 16 38 38 H 1.08997 * 110.72785 * 155.77194 * 18 17 16 39 39 H 1.08994 * 109.46065 * 65.82095 * 22 21 19 40 40 H 1.08996 * 109.44754 * 305.84499 * 22 21 19 41 41 H 1.09000 * 109.50718 * 180.87995 * 23 22 21 42 42 H 1.09003 * 109.50613 * 60.75866 * 23 22 21 43 43 H 1.09001 * 109.52254 * 177.56093 * 24 23 22 44 44 H 1.08996 * 109.52113 * 297.68852 * 24 23 22 45 45 H 1.08996 * 109.50550 * 62.31937 * 25 24 23 46 46 H 1.09004 * 109.50314 * 182.43728 * 25 24 23 47 47 H 1.08998 * 109.46518 * 294.18165 * 26 21 19 48 48 H 1.09007 * 109.46344 * 54.15433 * 26 21 19 49 49 H 1.08996 * 109.91789 * 26.49431 * 27 16 15 50 50 H 1.08992 * 110.08220 * 265.28676 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0572 -1.2296 -0.2558 9 6 1.3412 -2.4134 0.3332 10 6 0.2140 -2.3882 1.1754 11 6 -0.4273 -3.5634 1.4931 12 6 0.0335 -4.7694 0.9872 13 6 1.1391 -4.8055 0.1520 14 6 1.7996 -3.6429 -0.1746 15 6 3.0054 -3.6861 -1.0774 16 7 2.6258 -3.2356 -2.4232 17 6 1.9086 -4.3071 -3.1606 18 6 2.0634 -3.8823 -4.6425 19 6 3.4965 -3.3044 -4.6887 20 1 4.1984 -4.0575 -5.0470 21 7 3.5398 -2.1166 -5.5519 22 6 4.9075 -1.5924 -5.6576 23 6 4.8923 -0.2780 -6.4412 24 6 4.3121 -0.5277 -7.8361 25 6 2.9065 -1.1193 -7.6987 26 6 2.9792 -2.4085 -6.8773 27 6 3.8222 -2.9197 -3.2335 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1461 -1.4501 1.5712 30 1 -1.2923 -3.5465 2.1396 31 1 -0.4758 -5.6871 1.2421 32 1 1.4864 -5.7498 -0.2403 33 1 3.3841 -4.7068 -1.1294 34 1 3.7805 -3.0307 -0.6801 35 1 2.3791 -5.2750 -2.9867 36 1 0.8575 -4.3346 -2.8733 37 1 1.3309 -3.1184 -4.9033 38 1 1.9740 -4.7451 -5.3025 39 1 5.5351 -2.3172 -6.1762 40 1 5.3065 -1.4153 -4.6589 41 1 5.9094 0.1028 -6.5330 42 1 4.2759 0.4517 -5.9160 43 1 4.2592 0.4139 -8.3825 44 1 4.9504 -1.2269 -8.3762 45 1 2.2581 -0.4033 -7.1940 46 1 2.5060 -1.3392 -8.6884 47 1 3.6158 -3.1295 -7.3902 48 1 1.9777 -2.8241 -6.7646 49 1 4.6746 -3.4986 -2.8783 50 1 4.0453 -1.8547 -3.1720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:54 Heat of formation + Delta-G solvation = 9.363333 kcal Electronic energy + Delta-G solvation = -27098.421771 eV Core-core repulsion = 23702.771311 eV Total energy + Delta-G solvation = -3395.650460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79091 -39.57041 -38.33997 -35.39816 -34.76438 -32.67726 -31.94229 -31.27097 -30.43508 -28.94260 -27.20468 -25.86507 -24.58602 -24.03345 -22.75683 -21.92167 -21.12577 -21.04843 -20.55660 -18.95947 -17.72470 -17.21510 -16.77775 -16.27124 -15.89290 -15.68723 -15.59006 -15.29574 -15.11903 -14.88365 -14.55582 -14.34444 -14.25486 -13.95925 -13.76999 -13.43202 -13.24812 -13.12381 -12.91039 -12.74373 -12.62802 -12.52058 -12.36736 -12.17052 -12.12125 -12.01125 -11.95840 -11.84310 -11.55751 -11.26086 -11.18098 -11.15442 -11.01435 -10.92191 -9.23806 -9.15868 -9.12949 -8.95722 -8.50265 -6.14418 1.05853 1.17998 1.39058 1.49687 1.57396 2.26514 2.86775 2.90850 3.28438 3.61570 3.81456 3.91531 3.95702 4.03514 4.04136 4.22916 4.33926 4.37122 4.39196 4.42133 4.49314 4.56555 4.57592 4.66322 4.68043 4.70679 4.77528 4.80699 4.83256 4.91071 4.93789 5.00228 5.04145 5.08377 5.11685 5.15372 5.23027 5.24912 5.31537 5.33516 5.42883 5.50229 5.60253 5.85028 6.05016 6.18123 6.22095 6.26134 6.27479 6.34382 6.41696 6.55280 6.83258 7.11312 7.19309 8.47350 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.004565 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.160485 B = 6132.646989 C = 7666.245812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.038 3.962 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.456 4.456 8 H 0.071 0.929 9 C 0.102 3.898 10 C -0.196 4.196 11 C -0.115 4.115 12 C -0.246 4.246 13 C -0.091 4.091 14 C -0.192 4.192 15 C 0.128 3.872 16 N -0.513 5.513 17 C 0.046 3.954 18 C -0.106 4.106 19 C 0.087 3.913 20 H 0.057 0.943 21 N -0.545 5.545 22 C 0.055 3.945 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.117 4.117 26 C 0.055 3.945 27 C 0.049 3.951 28 H 0.281 0.719 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.074 0.926 49 H 0.044 0.956 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 -3.805 -14.540 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.486 4.486 8 H 0.089 0.911 9 C 0.100 3.900 10 C -0.215 4.215 11 C -0.133 4.133 12 C -0.265 4.265 13 C -0.110 4.110 14 C -0.194 4.194 15 C 0.001 3.999 16 N -0.238 5.238 17 C -0.083 4.083 18 C -0.144 4.144 19 C -0.022 4.022 20 H 0.075 0.925 21 N -0.271 5.271 22 C -0.073 4.073 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.072 4.072 27 C -0.079 4.079 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.042 -2.819 -14.265 16.617 hybrid contribution 0.813 -0.331 0.061 0.880 sum 8.855 -3.149 -14.204 17.032 Atomic orbital electron populations 1.69902 1.08821 1.29686 1.37410 1.26564 0.95274 1.03925 0.91800 0.85445 0.79398 0.77277 0.79050 1.19407 1.19516 1.18201 1.19517 0.96993 0.91480 1.40631 0.91121 1.17685 0.91136 0.92841 0.88368 1.21290 1.00884 0.96631 1.02715 1.20919 0.98953 0.93395 1.00067 1.20662 1.01784 0.96683 1.07402 1.20684 0.95761 0.96515 0.98019 1.19780 1.02128 0.93267 1.04238 1.20636 0.94467 0.96609 0.88209 1.64652 1.20224 1.37731 1.01145 1.23091 0.98986 0.92802 0.93380 1.22533 0.95960 1.00456 0.95433 1.22358 0.96942 0.90622 0.92234 0.92485 1.61947 1.21578 1.30688 1.12841 1.22109 0.88381 0.96595 1.00196 1.21582 1.01440 0.96448 0.95969 1.21551 0.96085 1.01330 0.96357 1.21592 0.97636 0.96577 0.99625 1.22122 0.99876 0.97241 0.87981 1.22845 0.91882 1.00974 0.92200 0.90874 0.88752 0.87959 0.86975 0.87125 0.94601 0.92565 0.93338 0.92568 0.91469 0.89059 0.94251 0.91611 0.90200 0.92958 0.91041 0.91402 0.92879 0.89968 0.94355 0.90794 0.93743 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.84 10.99 21.83 0.24 -45.60 16 2 C 0.04 1.99 5.16 85.26 0.44 2.43 16 3 Si 0.97 40.74 29.59 68.60 2.03 42.77 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.46 -24.90 8.43 23.46 0.20 -24.70 16 8 H 0.07 3.78 6.57 -2.91 -0.02 3.76 16 9 C 0.10 5.58 5.55 -21.29 -0.12 5.46 16 10 C -0.20 -10.71 8.68 22.73 0.20 -10.51 16 11 C -0.11 -5.58 10.02 22.22 0.22 -5.35 16 12 C -0.25 -10.95 10.05 22.46 0.23 -10.73 16 13 C -0.09 -4.00 9.65 22.22 0.21 -3.79 16 14 C -0.19 -9.19 5.20 -19.41 -0.10 -9.29 16 15 C 0.13 5.25 4.22 85.55 0.36 5.61 16 16 N -0.51 -20.18 5.17 -887.54 -4.59 -24.77 16 17 C 0.05 1.53 6.27 86.65 0.54 2.08 16 18 C -0.11 -2.93 5.36 31.80 0.17 -2.76 16 19 C 0.09 2.34 2.73 45.80 0.13 2.47 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 N -0.54 -14.26 4.42 -865.95 -3.83 -18.09 16 22 C 0.05 1.25 5.26 86.32 0.45 1.70 16 23 C -0.12 -2.37 6.09 30.65 0.19 -2.18 16 24 C -0.12 -1.98 6.00 30.67 0.18 -1.80 16 25 C -0.12 -2.25 6.10 30.65 0.19 -2.06 16 26 C 0.06 1.19 5.17 86.33 0.45 1.63 16 27 C 0.05 1.61 5.77 86.45 0.50 2.10 16 28 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 29 H 0.09 5.45 6.26 -2.91 -0.02 5.43 16 30 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.11 4.15 8.01 -2.91 -0.02 4.13 16 33 H 0.04 1.30 7.54 -2.39 -0.02 1.28 16 34 H 0.06 2.39 6.79 -2.39 -0.02 2.38 16 35 H 0.05 1.46 7.74 -2.38 -0.02 1.44 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.12 7.26 -2.39 -0.02 2.11 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.63 6.63 -2.39 -0.02 1.61 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 1.63 6.28 -2.38 -0.01 1.62 16 49 H 0.04 1.31 7.77 -2.39 -0.02 1.30 16 50 H 0.06 2.38 6.85 -2.39 -0.02 2.36 16 Total: -1.00 -61.54 378.91 -0.82 -62.36 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.89 Total: 33.03 kcal Atomic # 6 Polarization: -54.13 SS G_CDS: 4.44 Total: -49.69 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -8.18 Total: -88.47 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -61.54 -0.82 -62.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.727 kcal (2) G-P(sol) polarization free energy of solvation -61.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds