Wall clock time and date at job start Tue Mar 31 2020 10:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48500 * 109.47176 * 240.00052 * 3 2 1 5 5 H 1.48498 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46718 * 120.00467 * 3 2 1 7 7 C 1.37884 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99366 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99995 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47031 * 184.96825 * 9 7 2 11 11 C 1.46895 * 110.99941 * 164.66753 * 10 9 7 12 12 C 1.53000 * 109.47355 * 192.01242 * 11 10 9 13 13 H 1.09000 * 109.63089 * 296.42064 * 12 11 10 14 14 C 1.52891 * 109.63773 * 176.01897 * 12 11 10 15 15 C 1.50719 * 109.87738 * 189.95023 * 14 12 11 16 16 C 1.38873 * 118.34880 * 196.76928 * 15 14 12 17 17 C 1.38034 * 120.30483 * 180.12922 * 16 15 14 18 18 C 1.38267 * 119.82191 * 359.97438 * 17 16 15 19 19 C 1.38013 * 119.87061 * 359.93328 * 18 17 16 20 20 C 1.37637 * 121.79927 * 16.74335 * 15 14 12 21 21 C 1.50624 * 121.80123 * 359.79419 * 20 15 14 22 22 N 1.46624 * 110.49972 * 17.35735 * 21 20 15 23 23 C 1.46892 * 110.99999 * 288.62126 * 10 9 7 24 24 C 1.54262 * 110.03446 * 267.84242 * 23 10 9 25 25 C 1.54970 * 104.16143 * 217.13664 * 24 23 10 26 26 C 1.54890 * 102.77330 * 37.88834 * 25 24 23 27 27 C 1.53881 * 110.03235 * 150.62787 * 23 10 9 28 28 H 0.96999 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46960 * 64.97084 * 9 7 2 30 30 H 1.09001 * 109.47068 * 304.97146 * 9 7 2 31 31 H 1.09001 * 109.47471 * 72.00935 * 11 10 9 32 32 H 1.09008 * 109.47167 * 312.01033 * 11 10 9 33 33 H 1.09001 * 109.39157 * 310.05116 * 14 12 11 34 34 H 1.09003 * 109.39007 * 69.84805 * 14 12 11 35 35 H 1.08005 * 119.87438 * 0.10825 * 16 15 14 36 36 H 1.07996 * 120.09216 * 180.02562 * 17 16 15 37 37 H 1.08001 * 120.06265 * 179.90585 * 18 17 16 38 38 H 1.08000 * 119.81024 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.26992 * 257.09025 * 21 20 15 40 40 H 1.09003 * 109.27045 * 137.62066 * 21 20 15 41 41 H 1.00906 * 110.99978 * 184.09875 * 22 21 20 42 42 H 1.09007 * 110.01891 * 29.23862 * 23 10 9 43 43 H 1.09001 * 110.48445 * 335.78662 * 24 23 10 44 44 H 1.09005 * 110.48419 * 98.43282 * 24 23 10 45 45 H 1.08993 * 110.72055 * 279.57193 * 25 24 23 46 46 H 1.09002 * 110.91956 * 156.29788 * 25 24 23 47 47 H 1.08998 * 110.48487 * 203.40083 * 26 25 24 48 48 H 1.08998 * 110.59711 * 80.82039 * 26 25 24 49 49 H 1.08997 * 110.03124 * 238.57241 * 27 23 10 50 50 H 1.09008 * 110.02967 * 359.97438 * 27 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2012 -3.6132 0.1188 11 6 1.5108 -4.8570 0.4849 12 6 2.5417 -5.9123 0.8905 13 1 3.1764 -6.1512 0.0371 14 6 1.8240 -7.1755 1.3666 15 6 2.8149 -8.1227 1.9930 16 6 2.4415 -9.4492 2.1644 17 6 3.3165 -10.3508 2.7363 18 6 4.5705 -9.9307 3.1396 19 6 4.9423 -8.6128 2.9675 20 6 4.0644 -7.7056 2.3922 21 6 4.5167 -6.2789 2.2225 22 7 3.3660 -5.3988 1.9963 23 6 2.9710 -3.7835 -1.1206 24 6 2.2676 -4.7993 -2.0442 25 6 3.4315 -5.5837 -2.7012 26 6 4.4525 -5.7148 -1.5438 27 6 4.3598 -4.3651 -0.8028 28 1 -0.4850 0.8400 0.0004 29 1 0.6925 -2.5962 -0.9315 30 1 0.5596 -2.5195 0.8418 31 1 0.9370 -5.2188 -0.3684 32 1 0.8377 -4.6665 1.3209 33 1 1.0663 -6.9057 2.1024 34 1 1.3457 -7.6621 0.5166 35 1 1.4620 -9.7774 1.8493 36 1 3.0227 -11.3817 2.8675 37 1 5.2576 -10.6325 3.5888 38 1 5.9222 -8.2858 3.2825 39 1 5.1920 -6.2148 1.3693 40 1 5.0430 -5.9590 3.1218 41 1 3.6648 -4.4522 1.8153 42 1 3.0751 -2.8254 -1.6299 43 1 1.6361 -5.4705 -1.4622 44 1 1.6794 -4.2821 -2.8023 45 1 3.8578 -5.0188 -3.5302 46 1 3.0987 -6.5662 -3.0360 47 1 5.4577 -5.8659 -1.9371 48 1 4.1765 -6.5342 -0.8801 49 1 5.1377 -3.6896 -1.1586 50 1 4.4627 -4.5205 0.2712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235662883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:48 Heat of formation + Delta-G solvation = 32.950263 kcal Electronic energy + Delta-G solvation = -27672.948320 eV Core-core repulsion = 24278.320666 eV Total energy + Delta-G solvation = -3394.627654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54540 -40.14990 -37.14528 -36.20316 -34.49500 -33.63004 -31.92307 -30.84798 -29.57771 -29.28027 -27.99779 -25.97497 -25.34583 -23.44892 -23.08246 -22.62357 -21.69504 -20.23372 -19.93731 -18.44319 -17.83858 -17.23071 -16.83696 -16.57059 -16.46822 -15.96386 -15.45031 -15.40806 -15.26534 -15.18230 -14.61035 -14.44217 -14.18069 -13.92286 -13.76617 -13.62693 -13.54901 -13.19626 -12.77621 -12.70927 -12.63322 -12.52337 -12.32950 -12.18342 -11.97468 -11.93996 -11.75480 -11.72557 -11.60489 -11.44061 -11.39944 -11.14017 -11.00976 -10.57448 -9.67732 -9.41488 -9.05861 -8.85562 -8.17486 -6.26799 0.52763 0.54030 1.40431 1.43493 1.51035 2.40862 2.90497 3.12774 3.23709 3.38700 3.75730 3.79308 3.83184 3.88087 4.07266 4.13426 4.20329 4.27953 4.35983 4.37098 4.47802 4.56272 4.58381 4.62536 4.66495 4.69958 4.71927 4.78132 4.83463 4.86012 4.89708 4.98345 5.00517 5.07957 5.14644 5.18052 5.19890 5.23320 5.28134 5.34462 5.42533 5.47031 5.53787 5.63536 5.67874 5.69335 5.80587 6.09784 6.18635 6.25468 6.47020 6.63659 6.70676 6.89226 7.42198 8.92793 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003640 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.374393 B = 7689.645073 C = 8046.407506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.213 3.787 10 N -0.525 5.525 11 C 0.048 3.952 12 C 0.078 3.922 13 H 0.083 0.917 14 C -0.072 4.072 15 C -0.080 4.080 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.091 4.091 21 C 0.094 3.906 22 N -0.686 5.686 23 C 0.081 3.919 24 C -0.172 4.172 25 C -0.110 4.110 26 C -0.122 4.122 27 C -0.119 4.119 28 H 0.263 0.737 29 H -0.041 1.041 30 H -0.001 1.001 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.356 0.644 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.243 -20.895 0.906 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.087 3.913 10 N -0.248 5.248 11 C -0.080 4.080 12 C -0.031 4.031 13 H 0.100 0.900 14 C -0.110 4.110 15 C -0.081 4.081 16 C -0.150 4.150 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.091 4.091 21 C -0.035 4.035 22 N -0.321 5.321 23 C -0.028 4.028 24 C -0.210 4.210 25 C -0.148 4.148 26 C -0.159 4.159 27 C -0.157 4.157 28 H 0.071 0.929 29 H -0.023 1.023 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.179 0.821 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.035 -20.893 1.794 23.247 hybrid contribution -0.383 1.546 -1.264 2.033 sum 9.652 -19.347 0.530 21.628 Atomic orbital electron populations 1.70079 1.07686 1.27756 1.52113 1.25869 0.95670 1.03022 0.95083 0.85495 0.78176 0.78273 0.79018 1.19366 1.21074 1.19390 1.21407 0.93486 0.91052 1.49382 0.92068 1.19310 0.90235 0.89011 0.92772 1.62202 1.26645 1.03751 1.32167 1.22414 0.96102 0.90653 0.98858 1.21950 0.94884 0.92684 0.93589 0.90009 1.20566 0.96710 0.93625 1.00123 1.19680 0.94572 0.94562 0.99237 1.21384 1.00579 0.92602 1.00468 1.21381 0.94151 1.00342 0.98648 1.21358 0.97123 0.95929 1.00265 1.21278 0.99883 0.93671 0.99539 1.19744 0.94351 0.95489 0.99507 1.20812 0.92128 0.89422 1.01106 1.60671 1.21078 1.06336 1.44034 1.22283 0.94014 0.97495 0.88988 1.23307 0.99408 0.99268 0.99022 1.22377 0.94874 1.00059 0.97489 1.22543 0.99890 0.96468 0.97013 1.22389 0.95360 0.96743 1.01218 0.92857 1.02299 0.98250 0.93123 0.93025 0.91248 0.89691 0.85039 0.83999 0.83863 0.84645 0.93536 0.89368 0.82121 0.92893 0.89285 0.93683 0.91378 0.90233 0.90180 0.90898 0.92092 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.51 -29.20 8.36 25.60 0.21 -28.98 16 8 H 0.06 3.40 7.67 -2.91 -0.02 3.38 16 9 C 0.21 11.34 4.68 85.55 0.40 11.74 16 10 N -0.52 -21.78 3.37 -871.28 -2.93 -24.71 16 11 C 0.05 1.70 4.12 86.30 0.36 2.06 16 12 C 0.08 2.25 1.51 44.83 0.07 2.32 16 13 H 0.08 2.22 2.29 -2.39 -0.01 2.22 16 14 C -0.07 -1.86 5.26 29.82 0.16 -1.70 16 15 C -0.08 -1.96 5.77 -19.85 -0.11 -2.08 16 16 C -0.13 -2.73 9.66 22.37 0.22 -2.51 16 17 C -0.13 -2.24 10.05 22.23 0.22 -2.01 16 18 C -0.13 -2.22 10.05 22.22 0.22 -2.00 16 19 C -0.13 -2.48 9.65 22.33 0.22 -2.26 16 20 C -0.09 -2.17 5.79 -19.91 -0.12 -2.28 16 21 C 0.09 2.32 6.02 85.59 0.52 2.83 16 22 N -0.69 -20.65 6.23 -495.95 -3.09 -23.74 16 23 C 0.08 2.98 2.66 45.64 0.12 3.10 16 24 C -0.17 -5.38 5.71 31.70 0.18 -5.20 16 25 C -0.11 -2.63 6.91 31.91 0.22 -2.41 16 26 C -0.12 -2.82 6.17 31.66 0.20 -2.63 16 27 C -0.12 -3.49 5.68 31.32 0.18 -3.31 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H -0.04 -2.35 8.06 -2.39 -0.02 -2.37 16 30 H 0.00 -0.04 7.79 -2.39 -0.02 -0.06 16 31 H 0.05 1.75 5.19 -2.39 -0.01 1.74 16 32 H 0.05 2.04 7.81 -2.38 -0.02 2.02 16 33 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.05 1.08 7.49 -2.39 -0.02 1.06 16 40 H 0.09 2.02 8.13 -2.39 -0.02 2.00 16 41 H 0.36 12.01 6.10 -89.69 -0.55 11.46 16 42 H 0.05 2.31 7.01 -2.38 -0.02 2.30 16 43 H 0.09 2.72 4.17 -2.39 -0.01 2.71 16 44 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.07 1.68 5.66 -2.39 -0.01 1.66 16 49 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.07 2.13 3.54 -2.38 -0.01 2.12 16 Total: -1.00 -64.42 365.64 0.40 -64.03 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.39 Total: 29.08 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.72 Total: -34.78 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -5.74 Total: -105.17 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.42 0.40 -64.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235662883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.978 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds