Wall clock time and date at job start Tue Mar 31 2020 11:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48503 * 109.47090 * 269.99978 * 3 2 1 5 5 H 1.48494 * 109.47072 * 30.00120 * 3 2 1 6 6 H 1.48498 * 109.46890 * 150.00322 * 3 2 1 7 7 C 1.37872 * 120.00109 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.85115 * 180.02562 * 7 2 1 9 9 C 1.53243 * 108.48438 * 128.58838 * 8 7 2 10 10 C 1.52956 * 109.39922 * 54.73493 * 9 8 7 11 11 H 1.09002 * 109.41295 * 56.36450 * 10 9 8 12 12 N 1.46898 * 109.41369 * 176.22583 * 10 9 8 13 13 C 1.46897 * 111.00114 * 275.14201 * 12 10 9 14 14 H 1.09006 * 110.62696 * 31.89337 * 13 12 10 15 15 C 1.55143 * 110.70729 * 268.60053 * 13 12 10 16 16 C 1.54899 * 101.65551 * 205.96241 * 15 13 12 17 17 N 1.47849 * 104.79592 * 37.06605 * 16 15 13 18 18 C 1.46892 * 111.00375 * 213.63662 * 17 16 15 19 19 C 1.50707 * 109.47255 * 290.84379 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99941 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97878 * 19 18 17 25 25 C 1.47437 * 108.56691 * 335.90609 * 17 16 15 26 26 C 1.52963 * 109.76078 * 296.29952 * 10 9 8 27 27 C 1.51276 * 120.85042 * 359.97438 * 7 2 1 28 28 H 0.96994 * 119.99974 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.62521 * 248.34425 * 8 7 2 30 30 H 1.09000 * 109.62602 * 8.72363 * 8 7 2 31 31 H 1.08999 * 109.53910 * 294.72311 * 9 8 7 32 32 H 1.08998 * 109.42546 * 174.67745 * 9 8 7 33 33 H 1.00901 * 111.00307 * 151.18828 * 12 10 9 34 34 H 1.09006 * 110.98745 * 324.05522 * 15 13 12 35 35 H 1.09005 * 110.99235 * 87.83064 * 15 13 12 36 36 H 1.08998 * 110.37762 * 278.23999 * 16 15 13 37 37 H 1.09000 * 110.38034 * 155.89516 * 16 15 13 38 38 H 1.09005 * 109.47695 * 170.84659 * 18 17 16 39 39 H 1.09000 * 109.47218 * 50.83972 * 18 17 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 45 45 H 1.09004 * 109.88710 * 120.38881 * 25 17 16 46 46 H 1.08998 * 109.89186 * 241.41829 * 25 17 16 47 47 H 1.09000 * 109.48402 * 183.61739 * 26 10 9 48 48 H 1.08999 * 109.47742 * 303.63769 * 26 10 9 49 49 H 1.08997 * 109.62530 * 111.65831 * 27 7 2 50 50 H 1.09000 * 109.62452 * 351.08326 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2164 0.0000 9 6 3.9890 -2.1308 1.1356 10 6 3.3396 -3.5072 0.9828 11 1 3.5740 -3.9110 -0.0022 12 7 3.8606 -4.4105 2.0175 13 6 5.1249 -5.0253 1.5916 14 1 5.6857 -4.3453 0.9502 15 6 4.8637 -6.3744 0.8714 16 6 6.1939 -7.1268 1.1242 17 7 6.5931 -6.7382 2.4937 18 6 8.0551 -6.6623 2.6144 19 6 8.6394 -8.0485 2.5222 20 6 8.9993 -8.5664 1.2921 21 6 9.5358 -9.8376 1.2076 22 6 9.7129 -10.5906 2.3532 23 6 9.3481 -10.0748 3.5827 24 6 8.8159 -8.8018 3.6677 25 6 5.9685 -5.4419 2.8148 26 6 1.8225 -3.3829 1.1333 27 6 1.2677 -2.5152 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.8779 -1.6001 -0.9543 30 1 3.8982 -0.2073 0.1566 31 1 3.7032 -1.6984 2.0945 32 1 5.0733 -2.2335 1.0916 33 1 3.1795 -5.1147 2.2591 34 1 4.0243 -6.9025 1.3241 35 1 4.6971 -6.2220 -0.1950 36 1 6.9502 -6.8126 0.4050 37 1 6.0378 -8.2040 1.0657 38 1 8.3180 -6.2205 3.5755 39 1 8.4546 -6.0454 1.8094 40 1 8.8614 -7.9779 0.3970 41 1 9.8166 -10.2424 0.2465 42 1 10.1324 -11.5836 2.2871 43 1 9.4824 -10.6647 4.4773 44 1 8.5355 -8.3968 4.6288 45 1 5.3266 -5.5461 3.6896 46 1 6.7398 -4.6962 3.0077 47 1 1.3703 -4.3736 1.0878 48 1 1.5891 -2.9205 2.0924 49 1 1.4200 -3.0193 -0.9549 50 1 0.2037 -2.3409 0.1590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255099991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:30 Heat of formation + Delta-G solvation = 17.964372 kcal Electronic energy + Delta-G solvation = -25893.222462 eV Core-core repulsion = 22497.944970 eV Total energy + Delta-G solvation = -3395.277491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.94898 -38.82999 -37.15294 -34.40830 -32.62442 -31.26122 -31.11908 -29.83999 -29.63003 -28.17765 -26.22631 -25.04485 -22.84917 -21.89615 -21.73165 -21.43070 -20.72824 -20.24046 -19.12544 -17.08853 -16.31856 -16.03386 -15.87354 -15.40905 -15.21104 -14.73073 -14.43176 -13.96847 -13.71211 -13.58353 -13.37099 -13.34828 -12.96061 -12.73409 -12.56695 -12.40589 -12.30524 -11.98248 -11.85783 -11.76501 -11.55791 -11.22376 -11.05712 -10.98748 -10.94512 -10.69769 -10.65214 -10.37521 -10.09662 -9.93515 -9.43765 -9.13780 -9.02419 -8.87455 -8.60908 -8.43933 -8.40347 -7.90408 -6.07435 -3.97736 1.10809 1.18638 3.28515 3.36938 3.37838 3.47560 4.01850 4.36964 4.40342 4.59650 4.61453 4.73896 4.76693 4.79013 4.89158 5.06206 5.15297 5.21497 5.27920 5.32046 5.37744 5.42498 5.48363 5.62100 5.77524 5.79465 5.81084 5.81692 5.91852 6.00692 6.06674 6.13149 6.22779 6.27044 6.28035 6.40321 6.57214 6.70735 6.76402 6.81245 6.84520 6.89505 6.93735 6.98113 7.08769 7.14514 7.47506 7.59453 7.70109 7.76939 7.84296 7.89921 8.42033 8.99714 9.57386 11.02276 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.002273 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.558378 B =12318.077151 C =12538.886904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.483 4.483 8 C -0.023 4.023 9 C -0.090 4.090 10 C 0.102 3.898 11 H 0.031 0.969 12 N -0.680 5.680 13 C 0.072 3.928 14 H 0.081 0.919 15 C -0.160 4.160 16 C 0.048 3.952 17 N -0.523 5.523 18 C 0.087 3.913 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.099 4.099 25 C 0.051 3.949 26 C -0.108 4.108 27 C 0.011 3.989 28 H 0.263 0.737 29 H 0.012 0.988 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.337 0.663 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.026 0.974 48 H 0.057 0.943 49 H 0.000 1.000 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.561 -18.074 4.808 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.503 4.503 8 C -0.061 4.061 9 C -0.128 4.128 10 C -0.006 4.006 11 H 0.049 0.951 12 N -0.310 5.310 13 C -0.040 4.040 14 H 0.099 0.901 15 C -0.199 4.199 16 C -0.080 4.080 17 N -0.247 5.247 18 C -0.041 4.041 19 C -0.073 4.073 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.077 4.077 26 C -0.146 4.146 27 C -0.027 4.027 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.156 0.844 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.019 0.981 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.515 -17.789 5.537 25.571 hybrid contribution 0.427 0.789 -1.269 1.554 sum 17.942 -17.000 4.268 25.083 Atomic orbital electron populations 1.69837 1.06124 1.26833 1.50176 1.24856 0.94729 0.98568 0.94684 0.86681 0.80048 0.83363 0.78382 1.20544 1.21665 1.18938 1.20032 0.89362 0.91415 1.49444 1.19849 0.96786 0.95673 0.93771 1.21527 0.95937 0.94681 1.00677 1.21440 0.95680 0.92690 0.90811 0.95117 1.60588 1.05023 1.22288 1.43067 1.22772 0.93015 0.93421 0.94774 0.90083 1.23443 0.97796 0.97347 1.01344 1.22961 0.95940 1.00331 0.88753 1.63672 1.06763 1.29044 1.25270 1.21265 0.88166 0.92783 1.01889 1.19777 0.98079 0.96171 0.93287 1.21082 0.99117 0.95905 0.97102 1.21111 0.99805 0.94645 0.98440 1.21136 1.00515 0.99777 0.92818 1.21152 0.99378 0.95824 0.97686 1.21037 0.98312 0.94197 0.98258 1.22845 0.97434 0.88379 0.99029 1.21794 0.92756 0.97898 1.02179 1.19348 0.98678 0.92974 0.91658 0.92668 0.96968 0.94780 0.92509 0.95594 0.84415 0.90562 0.90970 0.93750 0.90586 0.89892 0.93792 0.86449 0.86259 0.86342 0.86191 0.85986 0.89493 0.92646 0.95529 0.92399 0.98121 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 12.73 55.43 0.71 -25.12 16 2 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 21.25 27.53 -169.99 -4.68 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.13 6.11 56.52 0.35 -5.78 16 7 C -0.48 -12.79 5.51 -98.92 -0.55 -13.33 16 8 C -0.02 -0.54 5.60 -27.48 -0.15 -0.69 16 9 C -0.09 -1.86 5.43 -26.63 -0.14 -2.01 16 10 C 0.10 1.94 2.26 -67.75 -0.15 1.78 16 11 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 12 N -0.68 -10.69 6.11 -97.88 -0.60 -11.29 16 13 C 0.07 0.97 3.00 -65.89 -0.20 0.78 16 14 H 0.08 1.19 7.20 -51.93 -0.37 0.82 16 15 C -0.16 -1.92 6.66 -24.60 -0.16 -2.08 16 16 C 0.05 0.52 5.61 -2.30 -0.01 0.51 16 17 N -0.52 -5.87 5.15 -232.70 -1.20 -7.06 16 18 C 0.09 0.85 4.72 -4.98 -0.02 0.83 16 19 C -0.07 -0.71 5.09 -104.62 -0.53 -1.24 16 20 C -0.11 -1.04 8.93 -39.58 -0.35 -1.39 16 21 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 25 C 0.05 0.62 6.62 -2.84 -0.02 0.60 16 26 C -0.11 -2.27 5.24 -26.66 -0.14 -2.41 16 27 C 0.01 0.28 5.97 -27.51 -0.16 0.12 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.49 7.46 -51.93 -0.39 0.10 16 33 H 0.34 5.02 7.77 -39.29 -0.31 4.71 16 34 H 0.08 0.93 7.77 -51.93 -0.40 0.52 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.46 6.99 -51.93 -0.36 0.10 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.76 7.97 -51.93 -0.41 0.35 16 39 H 0.04 0.43 7.79 -51.93 -0.40 0.02 16 40 H 0.12 0.97 7.48 -52.48 -0.39 0.58 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 46 H 0.06 0.65 7.55 -51.93 -0.39 0.26 16 47 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 48 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 50 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -28.17 380.76 -13.02 -41.18 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.70 Total: 2.10 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -4.28 Total: -22.12 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.09 Total: -43.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.68 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.17 -13.02 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255099991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.148 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds