Wall clock time and date at job start Tue Mar 31 2020 11:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48503 * 109.47090 * 269.99978 * 3 2 1 5 5 H 1.48494 * 109.47072 * 30.00120 * 3 2 1 6 6 H 1.48498 * 109.46890 * 150.00322 * 3 2 1 7 7 C 1.37872 * 120.00109 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.85115 * 180.02562 * 7 2 1 9 9 C 1.53243 * 108.48438 * 128.58838 * 8 7 2 10 10 C 1.52956 * 109.39922 * 54.73493 * 9 8 7 11 11 H 1.09002 * 109.41295 * 56.36450 * 10 9 8 12 12 N 1.46898 * 109.41369 * 176.22583 * 10 9 8 13 13 C 1.46897 * 111.00114 * 275.14201 * 12 10 9 14 14 H 1.09006 * 110.62696 * 31.89337 * 13 12 10 15 15 C 1.55143 * 110.70729 * 268.60053 * 13 12 10 16 16 C 1.54899 * 101.65551 * 205.96241 * 15 13 12 17 17 N 1.47849 * 104.79592 * 37.06605 * 16 15 13 18 18 C 1.46892 * 111.00375 * 213.63662 * 17 16 15 19 19 C 1.50707 * 109.47255 * 290.84379 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99941 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97878 * 19 18 17 25 25 C 1.47437 * 108.56691 * 335.90609 * 17 16 15 26 26 C 1.52963 * 109.76078 * 296.29952 * 10 9 8 27 27 C 1.51276 * 120.85042 * 359.97438 * 7 2 1 28 28 H 0.96994 * 119.99974 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.62521 * 248.34425 * 8 7 2 30 30 H 1.09000 * 109.62602 * 8.72363 * 8 7 2 31 31 H 1.08999 * 109.53910 * 294.72311 * 9 8 7 32 32 H 1.08998 * 109.42546 * 174.67745 * 9 8 7 33 33 H 1.00901 * 111.00307 * 151.18828 * 12 10 9 34 34 H 1.09006 * 110.98745 * 324.05522 * 15 13 12 35 35 H 1.09005 * 110.99235 * 87.83064 * 15 13 12 36 36 H 1.08998 * 110.37762 * 278.23999 * 16 15 13 37 37 H 1.09000 * 110.38034 * 155.89516 * 16 15 13 38 38 H 1.09005 * 109.47695 * 170.84659 * 18 17 16 39 39 H 1.09000 * 109.47218 * 50.83972 * 18 17 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 45 45 H 1.09004 * 109.88710 * 120.38881 * 25 17 16 46 46 H 1.08998 * 109.89186 * 241.41829 * 25 17 16 47 47 H 1.09000 * 109.48402 * 183.61739 * 26 10 9 48 48 H 1.08999 * 109.47742 * 303.63769 * 26 10 9 49 49 H 1.08997 * 109.62530 * 111.65831 * 27 7 2 50 50 H 1.09000 * 109.62452 * 351.08326 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2164 0.0000 9 6 3.9890 -2.1308 1.1356 10 6 3.3396 -3.5072 0.9828 11 1 3.5740 -3.9110 -0.0022 12 7 3.8606 -4.4105 2.0175 13 6 5.1249 -5.0253 1.5916 14 1 5.6857 -4.3453 0.9502 15 6 4.8637 -6.3744 0.8714 16 6 6.1939 -7.1268 1.1242 17 7 6.5931 -6.7382 2.4937 18 6 8.0551 -6.6623 2.6144 19 6 8.6394 -8.0485 2.5222 20 6 8.9993 -8.5664 1.2921 21 6 9.5358 -9.8376 1.2076 22 6 9.7129 -10.5906 2.3532 23 6 9.3481 -10.0748 3.5827 24 6 8.8159 -8.8018 3.6677 25 6 5.9685 -5.4419 2.8148 26 6 1.8225 -3.3829 1.1333 27 6 1.2677 -2.5152 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.8779 -1.6001 -0.9543 30 1 3.8982 -0.2073 0.1566 31 1 3.7032 -1.6984 2.0945 32 1 5.0733 -2.2335 1.0916 33 1 3.1795 -5.1147 2.2591 34 1 4.0243 -6.9025 1.3241 35 1 4.6971 -6.2220 -0.1950 36 1 6.9502 -6.8126 0.4050 37 1 6.0378 -8.2040 1.0657 38 1 8.3180 -6.2205 3.5755 39 1 8.4546 -6.0454 1.8094 40 1 8.8614 -7.9779 0.3970 41 1 9.8166 -10.2424 0.2465 42 1 10.1324 -11.5836 2.2871 43 1 9.4824 -10.6647 4.4773 44 1 8.5355 -8.3968 4.6288 45 1 5.3266 -5.5461 3.6896 46 1 6.7398 -4.6962 3.0077 47 1 1.3703 -4.3736 1.0878 48 1 1.5891 -2.9205 2.0924 49 1 1.4200 -3.0193 -0.9549 50 1 0.2037 -2.3409 0.1590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255099991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:30 Heat of formation + Delta-G solvation = 2.524717 kcal Electronic energy + Delta-G solvation = -25893.891975 eV Core-core repulsion = 22497.944970 eV Total energy + Delta-G solvation = -3395.947005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77599 -39.75869 -38.61284 -35.79821 -34.01155 -32.63402 -31.74804 -31.47824 -30.70787 -29.50724 -27.59090 -26.00998 -23.66544 -23.40531 -23.26092 -22.50544 -21.60469 -21.34459 -20.83943 -18.07961 -17.75077 -17.07139 -16.91188 -16.42893 -16.25096 -16.01287 -15.74007 -15.17318 -14.99664 -14.54316 -14.47695 -14.40919 -14.25650 -14.16035 -13.87691 -13.73581 -13.40543 -13.28070 -13.05218 -12.90094 -12.73288 -12.67229 -12.44710 -12.26372 -12.08770 -11.89400 -11.80171 -11.75156 -11.68214 -11.65535 -11.30455 -10.77083 -10.55301 -10.44201 -9.76743 -9.67838 -9.30626 -9.16545 -8.15851 -6.09511 0.46620 0.55660 1.38153 1.40859 1.49196 2.41263 2.76940 3.04584 3.18595 3.32485 3.72801 3.80105 3.88697 3.98965 4.10139 4.17025 4.20307 4.26917 4.32223 4.38103 4.39067 4.48626 4.60125 4.62145 4.66649 4.75799 4.78773 4.81141 4.87408 4.97082 5.01043 5.04155 5.06858 5.09102 5.16228 5.18458 5.21473 5.25333 5.31429 5.36820 5.60449 5.63795 5.64442 5.66995 5.73699 5.77617 5.90086 5.97519 6.07223 6.17794 6.27335 6.37607 6.58393 6.96894 7.48015 8.95127 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.002273 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.558378 B =12318.077151 C =12538.886904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.494 4.494 8 C -0.025 4.025 9 C -0.084 4.084 10 C 0.116 3.884 11 H 0.029 0.971 12 N -0.678 5.678 13 C 0.072 3.928 14 H 0.073 0.927 15 C -0.154 4.154 16 C 0.055 3.945 17 N -0.528 5.528 18 C 0.089 3.911 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.113 4.113 25 C 0.059 3.941 26 C -0.097 4.097 27 C 0.007 3.993 28 H 0.262 0.738 29 H 0.018 0.982 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.344 0.656 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.041 0.959 49 H -0.003 1.003 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.998 -19.482 5.160 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.174 1.174 7 C -0.514 4.514 8 C -0.063 4.063 9 C -0.123 4.123 10 C 0.007 3.993 11 H 0.047 0.953 12 N -0.308 5.308 13 C -0.039 4.039 14 H 0.091 0.909 15 C -0.194 4.194 16 C -0.073 4.073 17 N -0.252 5.252 18 C -0.039 4.039 19 C -0.087 4.087 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.132 4.132 25 C -0.069 4.069 26 C -0.136 4.136 27 C -0.031 4.031 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 19.981 -19.218 5.893 28.343 hybrid contribution -0.318 1.110 -1.395 1.811 sum 19.663 -18.109 4.497 27.107 Atomic orbital electron populations 1.69979 1.07651 1.27343 1.52415 1.25652 0.95416 1.01920 0.95101 0.85809 0.79371 0.79575 0.78567 1.20068 1.21974 1.17379 1.20659 0.91276 0.91782 1.47654 1.19871 0.94707 0.96549 0.95148 1.21410 0.97371 0.94874 0.98616 1.21124 0.93823 0.92729 0.91642 0.95282 1.60475 1.05898 1.22674 1.41791 1.22784 0.91828 0.93794 0.95542 0.90867 1.23373 0.98445 0.96523 1.01049 1.22900 0.95417 1.00188 0.88785 1.63668 1.07739 1.28328 1.25452 1.21267 0.87195 0.93202 1.02191 1.19830 0.98857 0.96200 0.93786 1.21231 0.99455 0.96477 0.97133 1.21393 0.99433 0.94442 0.99487 1.21457 1.00020 1.00679 0.92591 1.21433 0.98910 0.95700 0.98676 1.21215 0.98756 0.94774 0.98414 1.22714 0.97238 0.88962 0.98000 1.21593 0.94581 0.97984 0.99422 1.19319 0.96973 0.93750 0.93051 0.92938 0.96399 0.94773 0.93898 0.93341 0.83627 0.90583 0.91060 0.93089 0.90496 0.89434 0.93659 0.85988 0.84580 0.84301 0.84436 0.85551 0.90157 0.92229 0.93298 0.93971 0.98443 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 12.73 21.45 0.27 -55.41 16 2 C 0.02 0.93 5.46 84.65 0.46 1.40 16 3 Si 0.94 43.72 27.53 68.60 1.89 45.61 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.25 -10.88 6.11 99.48 0.61 -10.28 16 7 C -0.49 -26.27 5.51 -16.17 -0.09 -26.36 16 8 C -0.02 -1.13 5.60 30.11 0.17 -0.96 16 9 C -0.08 -3.34 5.43 30.66 0.17 -3.18 16 10 C 0.12 4.21 2.26 44.89 0.10 4.31 16 11 H 0.03 1.08 7.86 -2.39 -0.02 1.06 16 12 N -0.68 -20.00 6.11 -463.58 -2.83 -22.83 16 13 C 0.07 1.79 3.00 46.10 0.14 1.93 16 14 H 0.07 1.97 7.20 -2.38 -0.02 1.95 16 15 C -0.15 -3.38 6.66 31.98 0.21 -3.17 16 16 C 0.05 1.09 5.61 86.77 0.49 1.57 16 17 N -0.53 -10.81 5.15 -890.12 -4.59 -15.40 16 18 C 0.09 1.60 4.72 85.56 0.40 2.00 16 19 C -0.09 -1.54 5.09 -19.86 -0.10 -1.65 16 20 C -0.12 -2.07 8.93 22.27 0.20 -1.88 16 21 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 22 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 24 C -0.11 -1.92 9.70 22.27 0.22 -1.70 16 25 C 0.06 1.31 6.62 86.65 0.57 1.89 16 26 C -0.10 -4.05 5.24 30.64 0.16 -3.89 16 27 C 0.01 0.36 5.97 30.09 0.18 0.54 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.03 1.54 4.59 -2.39 -0.01 1.53 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.71 7.46 -2.39 -0.02 1.69 16 33 H 0.34 9.54 7.77 -89.69 -0.70 8.84 16 34 H 0.08 1.69 7.77 -2.38 -0.02 1.67 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 0.95 6.99 -2.39 -0.02 0.93 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.47 7.97 -2.38 -0.02 1.45 16 39 H 0.05 0.80 7.79 -2.39 -0.02 0.78 16 40 H 0.12 1.82 7.48 -2.91 -0.02 1.80 16 41 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.08 1.92 8.03 -2.38 -0.02 1.90 16 46 H 0.06 1.28 7.55 -2.39 -0.02 1.26 16 47 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 48 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.02 1.39 7.07 -2.39 -0.02 1.37 16 Total: -1.00 -60.48 380.76 -1.20 -61.68 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.11 Total: 20.40 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.95 Total: -34.06 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -7.15 Total: -93.64 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.89 Total: 45.61 kcal Total: -60.48 -1.20 -61.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255099991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.207 kcal (2) G-P(sol) polarization free energy of solvation -60.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds