Wall clock time and date at job start Tue Mar 31 2020 11:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99743 * 2 1 4 4 H 1.48507 * 109.47171 * 174.63482 * 3 2 1 5 5 H 1.48504 * 109.46983 * 294.63116 * 3 2 1 6 6 H 1.48492 * 109.47733 * 54.63550 * 3 2 1 7 7 C 1.37871 * 119.99963 * 179.97438 * 2 1 3 8 8 C 1.51274 * 120.85090 * 344.57878 * 7 2 1 9 9 C 1.53230 * 108.53639 * 128.62817 * 8 7 2 10 10 C 1.52957 * 109.40672 * 54.62472 * 9 8 7 11 11 H 1.09002 * 109.41157 * 56.44029 * 10 9 8 12 12 N 1.46904 * 109.41246 * 176.29261 * 10 9 8 13 13 C 1.46901 * 110.99573 * 205.00130 * 12 10 9 14 14 H 1.09001 * 110.64783 * 323.29991 * 13 12 10 15 15 C 1.54594 * 110.72508 * 86.45958 * 13 12 10 16 16 C 1.53996 * 105.14268 * 140.48945 * 15 13 12 17 17 N 1.47906 * 107.05525 * 1.22370 * 16 15 13 18 18 C 1.46898 * 110.99863 * 214.15527 * 17 16 15 19 19 C 1.50710 * 109.47055 * 69.87508 * 18 17 16 20 20 C 1.38236 * 119.99704 * 269.72513 * 19 18 17 21 21 C 1.38235 * 119.99156 * 179.74125 * 20 19 18 22 22 C 1.38231 * 120.00512 * 0.53479 * 21 20 19 23 23 C 1.38230 * 119.99717 * 359.74483 * 22 21 20 24 24 C 1.38234 * 120.00451 * 359.97438 * 23 22 21 25 25 C 1.48533 * 105.82170 * 334.67005 * 17 16 15 26 26 C 1.52952 * 109.81881 * 296.40438 * 10 9 8 27 27 C 1.51272 * 120.85029 * 164.54807 * 7 2 1 28 28 H 0.97000 * 119.99984 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.62633 * 8.91117 * 8 7 2 30 30 H 1.08998 * 109.77804 * 248.43175 * 8 7 2 31 31 H 1.08999 * 109.48127 * 294.64608 * 9 8 7 32 32 H 1.08999 * 109.48923 * 174.61545 * 9 8 7 33 33 H 1.00896 * 110.99354 * 81.05090 * 12 10 9 34 34 H 1.08994 * 110.30928 * 21.56898 * 15 13 12 35 35 H 1.08995 * 110.39055 * 259.44821 * 15 13 12 36 36 H 1.08996 * 109.91494 * 241.87508 * 16 15 13 37 37 H 1.08998 * 109.91788 * 120.57432 * 16 15 13 38 38 H 1.08997 * 109.47589 * 189.87269 * 18 17 16 39 39 H 1.08996 * 109.47342 * 309.87585 * 18 17 16 40 40 H 1.07996 * 120.00184 * 0.02562 * 20 19 18 41 41 H 1.08010 * 119.99714 * 180.29321 * 21 20 19 42 42 H 1.07999 * 120.00014 * 179.76552 * 22 21 20 43 43 H 1.08010 * 120.00115 * 180.02562 * 23 22 21 44 44 H 1.07993 * 120.00341 * 180.02562 * 24 23 22 45 45 H 1.08999 * 110.66624 * 157.64144 * 25 17 16 46 46 H 1.08997 * 110.66780 * 280.77255 * 25 17 16 47 47 H 1.09003 * 109.48621 * 183.57938 * 26 10 9 48 48 H 1.09004 * 109.48060 * 303.61468 * 26 10 9 49 49 H 1.09004 * 109.62420 * 351.09106 * 27 7 2 50 50 H 1.09002 * 109.62296 * 111.65898 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3495 0.1309 5 1 1.9912 2.3382 -1.2727 6 1 1.7950 2.4516 1.1416 7 6 2.0046 -1.1940 0.0005 8 6 1.3082 -2.4916 0.3465 9 6 1.6002 -3.5111 -0.7596 10 6 3.1129 -3.6381 -0.9474 11 1 3.5741 -3.9111 0.0018 12 7 3.3954 -4.6790 -1.9447 13 6 4.7346 -5.2491 -1.7455 14 1 5.4373 -4.4783 -1.4292 15 6 4.6903 -6.4040 -0.7187 16 6 5.6507 -7.4724 -1.2733 17 7 6.2246 -6.9321 -2.5248 18 6 6.4553 -8.0031 -3.5034 19 6 5.1312 -8.5180 -4.0062 20 6 4.5068 -9.5677 -3.3586 21 6 3.2897 -10.0363 -3.8166 22 6 2.7023 -9.4628 -4.9287 23 6 3.3294 -8.4170 -5.5797 24 6 4.5438 -7.9444 -5.1183 25 6 5.2333 -5.9502 -3.0341 26 6 3.6897 -2.3049 -1.4264 27 6 3.4765 -1.2401 -0.3455 28 1 -0.4850 0.8400 -0.0004 29 1 0.2335 -2.3234 0.4150 30 1 1.6814 -2.8679 1.2989 31 1 1.1451 -3.1764 -1.6918 32 1 1.1859 -4.4797 -0.4800 33 1 3.2911 -4.3197 -2.8817 34 1 3.6798 -6.8056 -0.6444 35 1 5.0319 -6.0580 0.2568 36 1 5.1031 -8.3913 -1.4822 37 1 6.4460 -7.6663 -0.5535 38 1 7.0345 -7.6124 -4.3400 39 1 7.0050 -8.8163 -3.0294 40 1 4.9677 -10.0184 -2.4921 41 1 2.7995 -10.8533 -3.3079 42 1 1.7532 -9.8315 -5.2888 43 1 2.8703 -7.9685 -6.4484 44 1 5.0336 -7.1271 -5.6266 45 1 5.7104 -5.2332 -3.7022 46 1 4.4115 -6.4592 -3.5378 47 1 4.7565 -2.4187 -1.6192 48 1 3.1852 -1.9988 -2.3428 49 1 3.7948 -0.2677 -0.7215 50 1 4.0533 -1.4991 0.5424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255099993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:33 Heat of formation + Delta-G solvation = 23.181053 kcal Electronic energy + Delta-G solvation = -26685.185094 eV Core-core repulsion = 23290.133815 eV Total energy + Delta-G solvation = -3395.051279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32042 -38.48662 -37.11374 -34.33821 -32.56827 -31.31394 -31.08002 -29.60477 -29.50893 -28.33065 -26.22987 -25.00148 -22.81955 -21.99030 -21.83379 -21.21985 -20.62361 -19.91201 -19.14598 -17.02583 -16.42410 -16.15122 -15.84328 -15.32639 -15.10869 -14.55572 -14.38263 -14.06686 -13.96443 -13.65174 -13.33110 -13.10512 -12.97261 -12.85552 -12.38072 -12.17888 -12.11752 -11.97061 -11.60299 -11.47555 -11.42944 -11.30362 -11.11317 -10.98090 -10.89869 -10.78023 -10.55567 -10.29833 -10.01541 -9.74918 -9.54878 -9.06547 -8.93476 -8.87172 -8.73582 -8.50720 -8.34908 -7.76378 -6.09579 -3.93899 1.13881 1.21185 3.26921 3.37513 3.40705 3.56205 3.93990 4.41484 4.54737 4.55883 4.71755 4.73459 4.81427 4.89676 4.91919 5.11767 5.18057 5.23642 5.30488 5.41377 5.45371 5.54751 5.65884 5.70997 5.80904 5.81916 5.83576 5.93596 5.96930 6.06400 6.20080 6.23999 6.26563 6.30320 6.33741 6.37361 6.56731 6.74989 6.78919 6.80707 6.87497 6.89570 6.93939 7.03450 7.12574 7.26406 7.44226 7.64228 7.73229 7.75873 7.90196 7.97655 8.45447 9.01841 9.58638 11.00309 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002956 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.758372 B = 9470.291769 C = 9895.501731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.490 4.490 8 C 0.009 3.991 9 C -0.090 4.090 10 C 0.102 3.898 11 H 0.063 0.937 12 N -0.681 5.681 13 C 0.085 3.915 14 H 0.054 0.946 15 C -0.120 4.120 16 C 0.029 3.971 17 N -0.505 5.505 18 C 0.082 3.918 19 C -0.119 4.119 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.105 4.105 25 C 0.023 3.977 26 C -0.132 4.132 27 C -0.011 4.011 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.000 1.000 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.335 0.665 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.027 0.973 48 H 0.051 0.949 49 H 0.029 0.971 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -18.664 -8.992 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.509 4.509 8 C -0.029 4.029 9 C -0.129 4.129 10 C -0.007 4.007 11 H 0.081 0.919 12 N -0.311 5.311 13 C -0.026 4.026 14 H 0.072 0.928 15 C -0.159 4.159 16 C -0.099 4.099 17 N -0.226 5.226 18 C -0.046 4.046 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.105 4.105 26 C -0.172 4.172 27 C -0.049 4.049 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.045 0.955 48 H 0.070 0.930 49 H 0.048 0.952 50 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 10.213 -18.803 -8.524 23.033 hybrid contribution 0.125 1.310 -0.531 1.419 sum 10.338 -17.493 -9.055 22.246 Atomic orbital electron populations 1.69925 1.06252 1.26758 1.49150 1.24815 0.94531 0.98510 0.94609 0.86802 0.81032 0.83970 0.77677 1.18708 1.21030 1.21215 1.20010 0.92362 0.92412 1.46089 1.19396 0.99024 0.92356 0.92113 1.21533 0.92675 0.97847 1.00838 1.21494 0.97811 0.87961 0.93439 0.91864 1.60849 1.25515 1.37271 1.07422 1.22313 0.90429 0.95600 0.94253 0.92792 1.22416 0.99703 0.95201 0.98545 1.22990 0.97220 0.97658 0.92036 1.65113 1.41758 1.12210 1.03566 1.21378 0.92827 0.94268 0.96102 1.20565 0.98824 0.96477 0.96172 1.21062 0.95820 0.96636 0.99365 1.21145 0.95665 1.00142 0.96824 1.21161 0.99784 0.96675 0.96025 1.21161 0.95516 0.96907 1.00084 1.21061 0.95913 0.99407 0.96031 1.23581 0.94622 0.94997 0.97294 1.22201 0.96737 0.97683 1.00530 1.19692 0.97102 0.94376 0.93729 0.92749 0.92672 0.98144 0.93418 0.94822 0.84758 0.90400 0.91635 0.92947 0.90730 0.89805 0.90055 0.86258 0.86181 0.86175 0.86047 0.86155 0.90675 0.91097 0.95454 0.92976 0.95216 0.97023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 12.81 55.43 0.71 -24.92 16 2 C 0.08 2.16 5.43 -17.82 -0.10 2.06 16 3 Si 0.88 21.11 27.63 -169.99 -4.70 16.42 16 4 H -0.26 -6.12 6.14 56.52 0.35 -5.77 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.49 -13.03 5.44 -98.92 -0.54 -13.57 16 8 C 0.01 0.23 5.99 -27.48 -0.16 0.06 16 9 C -0.09 -1.99 5.54 -26.63 -0.15 -2.13 16 10 C 0.10 1.97 2.24 -67.76 -0.15 1.82 16 11 H 0.06 1.28 7.74 -51.93 -0.40 0.88 16 12 N -0.68 -11.09 6.05 -97.84 -0.59 -11.68 16 13 C 0.08 1.22 3.12 -65.85 -0.21 1.02 16 14 H 0.05 0.86 7.18 -51.93 -0.37 0.49 16 15 C -0.12 -1.61 6.50 -25.37 -0.16 -1.78 16 16 C 0.03 0.33 6.46 -2.75 -0.02 0.31 16 17 N -0.50 -5.75 5.54 -231.89 -1.28 -7.04 16 18 C 0.08 0.78 5.69 -4.97 -0.03 0.75 16 19 C -0.12 -1.18 3.95 -104.62 -0.41 -1.59 16 20 C -0.11 -1.07 8.19 -39.58 -0.32 -1.39 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 23 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 24 C -0.11 -1.04 7.49 -39.58 -0.30 -1.34 16 25 C 0.02 0.28 5.50 -1.90 -0.01 0.27 16 26 C -0.13 -2.70 5.18 -26.64 -0.14 -2.84 16 27 C -0.01 -0.25 5.47 -27.49 -0.15 -0.40 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 1.53 7.11 -51.93 -0.37 1.16 16 30 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.33 5.28 8.25 -39.29 -0.32 4.96 16 34 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.56 4.88 -51.93 -0.25 0.31 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 40 H 0.12 1.00 7.19 -52.49 -0.38 0.62 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.91 4.85 -51.93 -0.25 0.65 16 47 H 0.03 0.51 7.38 -51.93 -0.38 0.12 16 48 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.03 0.70 5.02 -51.93 -0.26 0.44 16 50 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -28.50 374.15 -12.78 -41.27 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.51 Total: 3.64 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.04 Total: -23.33 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -1.17 Total: -43.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.70 Total: 16.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.50 -12.78 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255099993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.455 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds