Wall clock time and date at job start Tue Mar 31 2020 11:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99743 * 2 1 4 4 H 1.48507 * 109.47171 * 174.63482 * 3 2 1 5 5 H 1.48504 * 109.46983 * 294.63116 * 3 2 1 6 6 H 1.48492 * 109.47733 * 54.63550 * 3 2 1 7 7 C 1.37871 * 119.99963 * 179.97438 * 2 1 3 8 8 C 1.51274 * 120.85090 * 344.57878 * 7 2 1 9 9 C 1.53230 * 108.53639 * 128.62817 * 8 7 2 10 10 C 1.52957 * 109.40672 * 54.62472 * 9 8 7 11 11 H 1.09002 * 109.41157 * 56.44029 * 10 9 8 12 12 N 1.46904 * 109.41246 * 176.29261 * 10 9 8 13 13 C 1.46901 * 110.99573 * 205.00130 * 12 10 9 14 14 H 1.09001 * 110.64783 * 323.29991 * 13 12 10 15 15 C 1.54594 * 110.72508 * 86.45958 * 13 12 10 16 16 C 1.53996 * 105.14268 * 140.48945 * 15 13 12 17 17 N 1.47906 * 107.05525 * 1.22370 * 16 15 13 18 18 C 1.46898 * 110.99863 * 214.15527 * 17 16 15 19 19 C 1.50710 * 109.47055 * 69.87508 * 18 17 16 20 20 C 1.38236 * 119.99704 * 269.72513 * 19 18 17 21 21 C 1.38235 * 119.99156 * 179.74125 * 20 19 18 22 22 C 1.38231 * 120.00512 * 0.53479 * 21 20 19 23 23 C 1.38230 * 119.99717 * 359.74483 * 22 21 20 24 24 C 1.38234 * 120.00451 * 359.97438 * 23 22 21 25 25 C 1.48533 * 105.82170 * 334.67005 * 17 16 15 26 26 C 1.52952 * 109.81881 * 296.40438 * 10 9 8 27 27 C 1.51272 * 120.85029 * 164.54807 * 7 2 1 28 28 H 0.97000 * 119.99984 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.62633 * 8.91117 * 8 7 2 30 30 H 1.08998 * 109.77804 * 248.43175 * 8 7 2 31 31 H 1.08999 * 109.48127 * 294.64608 * 9 8 7 32 32 H 1.08999 * 109.48923 * 174.61545 * 9 8 7 33 33 H 1.00896 * 110.99354 * 81.05090 * 12 10 9 34 34 H 1.08994 * 110.30928 * 21.56898 * 15 13 12 35 35 H 1.08995 * 110.39055 * 259.44821 * 15 13 12 36 36 H 1.08996 * 109.91494 * 241.87508 * 16 15 13 37 37 H 1.08998 * 109.91788 * 120.57432 * 16 15 13 38 38 H 1.08997 * 109.47589 * 189.87269 * 18 17 16 39 39 H 1.08996 * 109.47342 * 309.87585 * 18 17 16 40 40 H 1.07996 * 120.00184 * 0.02562 * 20 19 18 41 41 H 1.08010 * 119.99714 * 180.29321 * 21 20 19 42 42 H 1.07999 * 120.00014 * 179.76552 * 22 21 20 43 43 H 1.08010 * 120.00115 * 180.02562 * 23 22 21 44 44 H 1.07993 * 120.00341 * 180.02562 * 24 23 22 45 45 H 1.08999 * 110.66624 * 157.64144 * 25 17 16 46 46 H 1.08997 * 110.66780 * 280.77255 * 25 17 16 47 47 H 1.09003 * 109.48621 * 183.57938 * 26 10 9 48 48 H 1.09004 * 109.48060 * 303.61468 * 26 10 9 49 49 H 1.09004 * 109.62420 * 351.09106 * 27 7 2 50 50 H 1.09002 * 109.62296 * 111.65898 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3495 0.1309 5 1 1.9912 2.3382 -1.2727 6 1 1.7950 2.4516 1.1416 7 6 2.0046 -1.1940 0.0005 8 6 1.3082 -2.4916 0.3465 9 6 1.6002 -3.5111 -0.7596 10 6 3.1129 -3.6381 -0.9474 11 1 3.5741 -3.9111 0.0018 12 7 3.3954 -4.6790 -1.9447 13 6 4.7346 -5.2491 -1.7455 14 1 5.4373 -4.4783 -1.4292 15 6 4.6903 -6.4040 -0.7187 16 6 5.6507 -7.4724 -1.2733 17 7 6.2246 -6.9321 -2.5248 18 6 6.4553 -8.0031 -3.5034 19 6 5.1312 -8.5180 -4.0062 20 6 4.5068 -9.5677 -3.3586 21 6 3.2897 -10.0363 -3.8166 22 6 2.7023 -9.4628 -4.9287 23 6 3.3294 -8.4170 -5.5797 24 6 4.5438 -7.9444 -5.1183 25 6 5.2333 -5.9502 -3.0341 26 6 3.6897 -2.3049 -1.4264 27 6 3.4765 -1.2401 -0.3455 28 1 -0.4850 0.8400 -0.0004 29 1 0.2335 -2.3234 0.4150 30 1 1.6814 -2.8679 1.2989 31 1 1.1451 -3.1764 -1.6918 32 1 1.1859 -4.4797 -0.4800 33 1 3.2911 -4.3197 -2.8817 34 1 3.6798 -6.8056 -0.6444 35 1 5.0319 -6.0580 0.2568 36 1 5.1031 -8.3913 -1.4822 37 1 6.4460 -7.6663 -0.5535 38 1 7.0345 -7.6124 -4.3400 39 1 7.0050 -8.8163 -3.0294 40 1 4.9677 -10.0184 -2.4921 41 1 2.7995 -10.8533 -3.3079 42 1 1.7532 -9.8315 -5.2888 43 1 2.8703 -7.9685 -6.4484 44 1 5.0336 -7.1271 -5.6266 45 1 5.7104 -5.2332 -3.7022 46 1 4.4115 -6.4592 -3.5378 47 1 4.7565 -2.4187 -1.6192 48 1 3.1852 -1.9988 -2.3428 49 1 3.7948 -0.2677 -0.7215 50 1 4.0533 -1.4991 0.5424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255099993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:32 Heat of formation + Delta-G solvation = 6.925688 kcal Electronic energy + Delta-G solvation = -26685.889980 eV Core-core repulsion = 23290.133815 eV Total energy + Delta-G solvation = -3395.756165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.14947 -39.60628 -38.49428 -35.78885 -33.99057 -32.62122 -31.89040 -31.43793 -30.47708 -29.62522 -27.64617 -26.00106 -23.79592 -23.39295 -23.07284 -22.80806 -21.54713 -21.10150 -20.76452 -18.15080 -17.74209 -17.29639 -16.81756 -16.38830 -16.15236 -16.00088 -15.77892 -15.20985 -15.00233 -14.84145 -14.63839 -14.38905 -14.21022 -14.02304 -13.92602 -13.85850 -13.33644 -13.10014 -12.95721 -12.75101 -12.72868 -12.42593 -12.39459 -12.21633 -12.07994 -12.01191 -11.83892 -11.80358 -11.62095 -11.47699 -11.37308 -10.81434 -10.64024 -10.40789 -9.77528 -9.64948 -9.36537 -9.19618 -8.18807 -6.06649 0.42955 0.50785 1.35784 1.41569 1.51057 2.41293 2.80782 2.98818 3.09480 3.50409 3.69953 3.77085 3.93795 3.99672 4.10118 4.15418 4.21334 4.28199 4.30446 4.38152 4.44586 4.58145 4.62333 4.62998 4.73705 4.76465 4.79163 4.84546 4.97118 4.97544 5.03696 5.08978 5.09401 5.13472 5.14222 5.17652 5.19927 5.26724 5.34860 5.41790 5.56490 5.58230 5.61049 5.64137 5.64709 5.78101 5.87511 5.89761 6.04282 6.12732 6.29202 6.37531 6.58905 6.97190 7.48097 8.92862 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002956 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.758372 B = 9470.291769 C = 9895.501731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.247 1.247 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.501 4.501 8 C 0.006 3.994 9 C -0.080 4.080 10 C 0.117 3.883 11 H 0.058 0.942 12 N -0.676 5.676 13 C 0.083 3.917 14 H 0.044 0.956 15 C -0.119 4.119 16 C 0.034 3.966 17 N -0.508 5.508 18 C 0.084 3.916 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.116 4.116 25 C 0.032 3.968 26 C -0.124 4.124 27 C -0.013 4.013 28 H 0.262 0.738 29 H 0.021 0.979 30 H -0.001 1.001 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.340 0.660 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.030 0.970 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.348 -19.669 -9.843 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.171 1.171 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.520 4.520 8 C -0.032 4.032 9 C -0.118 4.118 10 C 0.007 3.993 11 H 0.076 0.924 12 N -0.306 5.306 13 C -0.028 4.028 14 H 0.062 0.938 15 C -0.158 4.158 16 C -0.094 4.094 17 N -0.231 5.231 18 C -0.043 4.043 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.134 4.134 25 C -0.096 4.096 26 C -0.164 4.164 27 C -0.052 4.052 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 12.429 -19.827 -9.384 25.212 hybrid contribution -0.590 1.528 -0.249 1.657 sum 11.839 -18.300 -9.633 23.829 Atomic orbital electron populations 1.70053 1.07813 1.27397 1.51297 1.25603 0.95198 1.01825 0.94915 0.85892 0.80567 0.80089 0.77472 1.17105 1.20822 1.21381 1.20596 0.94081 0.92618 1.44756 1.19364 0.96912 0.93579 0.93363 1.21339 0.94894 0.96945 0.98622 1.21164 0.95476 0.88508 0.94144 0.92397 1.60731 1.27185 1.35784 1.06941 1.22356 0.88897 0.95610 0.95892 0.93751 1.22387 0.99573 0.95490 0.98380 1.22963 0.97128 0.97052 0.92248 1.65137 1.41115 1.12846 1.03961 1.21435 0.92819 0.94077 0.96014 1.20656 0.99045 0.96719 0.96354 1.21282 0.96025 0.96734 0.99791 1.21425 0.95835 1.00622 0.96985 1.21444 1.00478 0.96718 0.96143 1.21416 0.95701 0.97135 1.00645 1.21246 0.96155 0.99760 0.96282 1.23459 0.94823 0.95170 0.96104 1.22094 0.98306 0.96940 0.99024 1.19722 0.94969 0.95613 0.94868 0.92875 0.96014 0.98306 0.94906 0.94024 0.84184 0.91766 0.91904 0.92240 0.89617 0.88973 0.88776 0.85139 0.84714 0.84789 0.84866 0.85404 0.90074 0.91387 0.92975 0.93582 0.95141 0.96699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 12.81 21.45 0.27 -54.92 16 2 C 0.02 1.29 5.43 84.65 0.46 1.75 16 3 Si 0.93 43.38 27.63 68.60 1.90 45.27 16 4 H -0.25 -10.77 6.14 99.48 0.61 -10.15 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.50 -26.77 5.44 -16.17 -0.09 -26.86 16 8 C 0.01 0.30 5.99 30.11 0.18 0.48 16 9 C -0.08 -3.49 5.54 30.66 0.17 -3.32 16 10 C 0.12 4.38 2.24 44.88 0.10 4.48 16 11 H 0.06 2.27 7.74 -2.39 -0.02 2.25 16 12 N -0.68 -20.94 6.05 -463.46 -2.80 -23.75 16 13 C 0.08 2.23 3.12 46.12 0.14 2.37 16 14 H 0.04 1.30 7.18 -2.39 -0.02 1.29 16 15 C -0.12 -3.01 6.50 31.47 0.20 -2.81 16 16 C 0.03 0.69 6.46 86.45 0.56 1.25 16 17 N -0.51 -10.25 5.54 -887.56 -4.91 -15.17 16 18 C 0.08 1.36 5.69 85.56 0.49 1.85 16 19 C -0.13 -2.24 3.95 -19.86 -0.08 -2.32 16 20 C -0.12 -2.09 8.19 22.27 0.18 -1.90 16 21 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.12 -2.08 7.49 22.27 0.17 -1.92 16 25 C 0.03 0.73 5.50 86.65 0.48 1.20 16 26 C -0.12 -4.85 5.18 30.65 0.16 -4.69 16 27 C -0.01 -0.62 5.47 30.10 0.16 -0.45 16 28 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.02 1.23 7.11 -2.39 -0.02 1.22 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.34 10.09 8.25 -89.70 -0.74 9.35 16 34 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.13 4.88 -2.39 -0.01 1.12 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 39 H 0.09 1.29 8.02 -2.39 -0.02 1.27 16 40 H 0.13 1.89 7.19 -2.91 -0.02 1.87 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.13 2.01 8.05 -2.91 -0.02 1.99 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 1.59 4.85 -2.39 -0.01 1.58 16 47 H 0.05 1.79 7.38 -2.39 -0.02 1.77 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.03 1.37 5.02 -2.39 -0.01 1.36 16 50 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -60.97 374.15 -1.51 -62.48 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.08 Total: 23.14 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.96 Total: -37.06 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -7.44 Total: -93.83 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.27 kcal Total: -60.97 -1.51 -62.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255099993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.408 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds