Wall clock time and date at job start Tue Mar 31 2020 11:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47177 * 269.99669 * 3 2 1 5 5 H 1.48495 * 109.47285 * 29.99879 * 3 2 1 6 6 H 1.48501 * 109.47225 * 150.00350 * 3 2 1 7 7 C 1.37877 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.84887 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53589 * 231.32614 * 8 7 2 10 10 C 1.52952 * 109.40786 * 305.37245 * 9 8 7 11 11 H 1.08997 * 109.41476 * 303.49453 * 10 9 8 12 12 N 1.46905 * 109.35730 * 183.66674 * 10 9 8 13 13 C 1.46902 * 110.99746 * 84.68366 * 12 10 9 14 14 H 1.08998 * 110.28648 * 325.70526 * 13 12 10 15 15 C 1.54268 * 110.32055 * 87.82765 * 13 12 10 16 16 C 1.54383 * 105.05843 * 118.89583 * 15 13 12 17 17 N 1.48567 * 104.59350 * 23.85197 * 16 15 13 18 18 C 1.46905 * 110.99608 * 200.96079 * 17 16 15 19 19 C 1.50703 * 109.47089 * 290.12349 * 18 17 16 20 20 C 1.38231 * 119.99916 * 269.73171 * 19 18 17 21 21 C 1.38237 * 119.99743 * 179.79030 * 20 19 18 22 22 C 1.38233 * 120.00069 * 0.43327 * 21 20 19 23 23 C 1.38234 * 119.99639 * 359.81960 * 22 21 20 24 24 C 1.38229 * 120.00458 * 359.97286 * 23 22 21 25 25 C 1.48723 * 104.28558 * 320.57072 * 17 16 15 26 26 C 1.52966 * 109.81570 * 63.60038 * 10 9 8 27 27 C 1.51268 * 120.84790 * 179.97438 * 7 2 1 28 28 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.62592 * 111.61555 * 8 7 2 30 30 H 1.09001 * 109.78825 * 351.13553 * 8 7 2 31 31 H 1.09003 * 109.47999 * 185.38997 * 9 8 7 32 32 H 1.08999 * 109.49401 * 65.36532 * 9 8 7 33 33 H 1.00904 * 110.99911 * 208.64025 * 12 10 9 34 34 H 1.08999 * 110.32308 * 237.78963 * 15 13 12 35 35 H 1.08993 * 110.32772 * 359.97438 * 15 13 12 36 36 H 1.09000 * 110.41168 * 142.62955 * 16 15 13 37 37 H 1.08998 * 110.40991 * 264.95458 * 16 15 13 38 38 H 1.09000 * 109.47110 * 50.12353 * 18 17 16 39 39 H 1.09000 * 109.46498 * 170.12446 * 18 17 16 40 40 H 1.08001 * 120.00359 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.99659 * 180.27248 * 21 20 19 42 42 H 1.07998 * 120.00021 * 179.83370 * 22 21 20 43 43 H 1.08004 * 119.99705 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00315 * 179.97438 * 24 23 22 45 45 H 1.08998 * 110.39308 * 280.64081 * 25 17 16 46 46 H 1.09004 * 110.50256 * 158.14678 * 25 17 16 47 47 H 1.08997 * 109.47972 * 56.37851 * 26 10 9 48 48 H 1.08996 * 109.48230 * 176.42423 * 26 10 9 49 49 H 1.08992 * 109.62819 * 8.95683 * 27 7 2 50 50 H 1.09002 * 109.62503 * 248.38475 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8238 -3.3830 1.1333 10 6 3.3406 -3.5073 0.9811 11 1 3.5740 -3.9122 -0.0037 12 7 3.8615 -4.4103 2.0162 13 6 3.7589 -5.8128 1.5915 14 1 2.8644 -5.9599 0.9863 15 6 5.0161 -6.2257 0.7985 16 6 5.6473 -7.3730 1.6163 17 7 4.5199 -7.9360 2.4032 18 6 5.0123 -8.6791 3.5709 19 6 5.6886 -9.9453 3.1119 20 6 4.9563 -11.1098 2.9762 21 6 5.5757 -12.2702 2.5511 22 6 6.9292 -12.2681 2.2703 23 6 7.6625 -11.1048 2.4110 24 6 7.0423 -9.9434 2.8320 25 6 3.7336 -6.7450 2.8217 26 6 3.9915 -2.1313 1.1324 27 6 3.5171 -1.2164 -0.0011 28 1 -0.4850 0.8400 -0.0004 29 1 1.4194 -3.0188 -0.9552 30 1 0.2030 -2.3438 0.1580 31 1 1.3714 -4.3737 1.0880 32 1 1.5913 -2.9208 2.0926 33 1 4.8124 -4.1739 2.2571 34 1 4.7384 -6.5773 -0.1951 35 1 5.7090 -5.3877 0.7241 36 1 6.0622 -8.1303 0.9512 37 1 6.4206 -6.9861 2.2799 38 1 5.7263 -8.0638 4.1184 39 1 4.1746 -8.9299 4.2216 40 1 3.8996 -11.1124 3.1994 41 1 5.0027 -13.1789 2.4408 42 1 7.4137 -13.1754 1.9407 43 1 8.7201 -11.1033 2.1920 44 1 7.6153 -9.0347 2.9424 45 1 4.2051 -6.2598 3.6762 46 1 2.7091 -7.0292 3.0622 47 1 3.7078 -1.6985 2.0916 48 1 5.0756 -2.2350 1.0864 49 1 3.8982 -0.2078 0.1588 50 1 3.8772 -1.5997 -0.9559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255099998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:38 Heat of formation + Delta-G solvation = 18.933341 kcal Electronic energy + Delta-G solvation = -25879.569317 eV Core-core repulsion = 22484.333843 eV Total energy + Delta-G solvation = -3395.235474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91976 -38.83950 -37.11844 -34.43538 -32.62456 -31.26079 -31.12174 -29.79222 -29.52881 -28.27094 -26.23335 -24.98809 -22.83998 -21.88550 -21.80911 -21.43088 -20.86800 -19.93096 -19.09406 -17.00238 -16.32435 -16.09017 -15.83663 -15.44513 -15.33865 -14.60332 -14.40684 -13.99061 -13.84423 -13.61808 -13.43378 -13.30400 -12.95201 -12.69220 -12.55957 -12.45709 -12.31030 -11.94942 -11.81798 -11.59401 -11.52214 -11.14490 -11.13078 -11.03141 -10.90951 -10.63724 -10.52830 -10.39431 -10.17017 -9.84846 -9.41383 -9.14590 -9.04764 -8.84600 -8.59732 -8.56424 -8.42761 -7.91694 -6.05690 -3.96168 1.10041 1.18054 3.28601 3.36783 3.37249 3.46630 4.00522 4.40760 4.43346 4.57353 4.63584 4.68683 4.76446 4.87193 4.96450 5.01291 5.12221 5.22511 5.27059 5.35050 5.40037 5.42109 5.55006 5.65914 5.75903 5.78154 5.79988 5.82073 5.91049 5.97730 6.10111 6.16690 6.22587 6.26394 6.27580 6.38469 6.58155 6.61263 6.74141 6.76276 6.85972 6.88851 6.91747 7.00907 7.09301 7.17902 7.44671 7.64846 7.70595 7.78243 7.88055 7.94200 8.44747 9.01877 9.58581 11.03938 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.038704 B = 0.002237 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.258106 B =12511.023103 C =12829.286182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.483 4.483 8 C 0.008 3.992 9 C -0.092 4.092 10 C 0.102 3.898 11 H 0.032 0.968 12 N -0.683 5.683 13 C 0.087 3.913 14 H 0.088 0.912 15 C -0.154 4.154 16 C 0.038 3.962 17 N -0.506 5.506 18 C 0.082 3.918 19 C -0.073 4.073 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.114 4.114 25 C 0.044 3.956 26 C -0.106 4.106 27 C -0.019 4.019 28 H 0.263 0.737 29 H -0.001 1.001 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.054 0.946 33 H 0.331 0.669 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.026 0.974 49 H 0.034 0.966 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.503 -20.802 6.450 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.502 4.502 8 C -0.030 4.030 9 C -0.130 4.130 10 C -0.006 4.006 11 H 0.050 0.950 12 N -0.314 5.314 13 C -0.024 4.024 14 H 0.107 0.893 15 C -0.194 4.194 16 C -0.090 4.090 17 N -0.231 5.231 18 C -0.046 4.046 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.057 4.057 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 12.404 -21.048 6.516 25.285 hybrid contribution 1.723 1.350 -0.187 2.197 sum 14.127 -19.699 6.329 25.053 Atomic orbital electron populations 1.69842 1.06107 1.26778 1.50130 1.24856 0.94726 0.98500 0.94745 0.86695 0.79981 0.83477 0.78375 1.20537 1.21674 1.19037 1.20030 0.89240 0.91552 1.49422 1.19397 0.98617 0.92972 0.91975 1.21602 0.92503 0.97589 1.01319 1.21443 0.96886 0.91378 0.90891 0.94954 1.60691 1.26057 1.01123 1.43497 1.22269 0.97507 0.88546 0.94112 0.89335 1.23094 0.98264 0.97918 1.00081 1.23063 0.92831 0.96440 0.96681 1.65462 1.18370 1.20660 1.18560 1.21198 0.98580 0.92369 0.92422 1.19749 0.93491 0.94846 0.99235 1.21048 0.99759 0.92190 0.98794 1.21159 0.94923 0.98219 0.99688 1.21139 0.94468 0.98135 1.00473 1.21107 0.99814 0.93005 1.00095 1.21060 0.94387 0.98114 0.99679 1.23149 0.98871 0.89182 0.97176 1.21723 0.95712 0.95543 1.01465 1.19794 0.96932 0.95468 0.93530 0.92682 0.98223 0.92510 0.95511 0.92768 0.85094 0.91026 0.91335 0.90498 0.94125 0.93732 0.89783 0.85936 0.86152 0.86320 0.86261 0.86491 0.93001 0.89790 0.92298 0.95487 0.94731 0.96768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 12.74 55.43 0.71 -25.20 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 21.18 27.53 -169.99 -4.68 16.50 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.10 6.11 56.52 0.35 -5.76 16 7 C -0.48 -12.81 5.51 -98.93 -0.55 -13.36 16 8 C 0.01 0.21 5.96 -27.49 -0.16 0.05 16 9 C -0.09 -1.99 5.43 -26.64 -0.14 -2.14 16 10 C 0.10 1.94 2.25 -67.75 -0.15 1.79 16 11 H 0.03 0.64 7.78 -51.93 -0.40 0.23 16 12 N -0.68 -10.72 6.04 -98.33 -0.59 -11.32 16 13 C 0.09 1.21 3.12 -66.33 -0.21 1.00 16 14 H 0.09 1.38 7.14 -51.93 -0.37 1.01 16 15 C -0.15 -1.89 6.55 -25.34 -0.17 -2.05 16 16 C 0.04 0.42 5.48 -2.18 -0.01 0.40 16 17 N -0.51 -5.74 5.36 -231.25 -1.24 -6.98 16 18 C 0.08 0.80 4.97 -4.97 -0.02 0.77 16 19 C -0.07 -0.71 5.10 -104.62 -0.53 -1.24 16 20 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 21 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 24 C -0.11 -1.03 8.73 -39.59 -0.35 -1.38 16 25 C 0.04 0.54 6.22 -2.09 -0.01 0.53 16 26 C -0.11 -2.13 5.24 -26.64 -0.14 -2.27 16 27 C -0.02 -0.45 5.59 -27.50 -0.15 -0.60 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.06 1.58 7.08 -51.93 -0.37 1.21 16 31 H 0.03 0.54 7.39 -51.93 -0.38 0.16 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.33 4.78 7.75 -39.29 -0.30 4.48 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.84 7.61 -51.93 -0.40 0.44 16 36 H 0.08 0.85 7.81 -51.93 -0.41 0.44 16 37 H 0.04 0.42 7.83 -51.93 -0.41 0.01 16 38 H 0.04 0.42 7.83 -51.93 -0.41 0.01 16 39 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 49 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 50 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -28.35 381.76 -13.11 -41.45 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.77 Total: 1.88 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -4.28 Total: -22.08 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -1.13 Total: -43.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.68 Total: 16.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.35 -13.11 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255099998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.385 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds