Wall clock time and date at job start Tue Mar 31 2020 11:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47177 * 269.99669 * 3 2 1 5 5 H 1.48495 * 109.47285 * 29.99879 * 3 2 1 6 6 H 1.48501 * 109.47225 * 150.00350 * 3 2 1 7 7 C 1.37877 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.84887 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53589 * 231.32614 * 8 7 2 10 10 C 1.52952 * 109.40786 * 305.37245 * 9 8 7 11 11 H 1.08997 * 109.41476 * 303.49453 * 10 9 8 12 12 N 1.46905 * 109.35730 * 183.66674 * 10 9 8 13 13 C 1.46902 * 110.99746 * 84.68366 * 12 10 9 14 14 H 1.08998 * 110.28648 * 325.70526 * 13 12 10 15 15 C 1.54268 * 110.32055 * 87.82765 * 13 12 10 16 16 C 1.54383 * 105.05843 * 118.89583 * 15 13 12 17 17 N 1.48567 * 104.59350 * 23.85197 * 16 15 13 18 18 C 1.46905 * 110.99608 * 200.96079 * 17 16 15 19 19 C 1.50703 * 109.47089 * 290.12349 * 18 17 16 20 20 C 1.38231 * 119.99916 * 269.73171 * 19 18 17 21 21 C 1.38237 * 119.99743 * 179.79030 * 20 19 18 22 22 C 1.38233 * 120.00069 * 0.43327 * 21 20 19 23 23 C 1.38234 * 119.99639 * 359.81960 * 22 21 20 24 24 C 1.38229 * 120.00458 * 359.97286 * 23 22 21 25 25 C 1.48723 * 104.28558 * 320.57072 * 17 16 15 26 26 C 1.52966 * 109.81570 * 63.60038 * 10 9 8 27 27 C 1.51268 * 120.84790 * 179.97438 * 7 2 1 28 28 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.62592 * 111.61555 * 8 7 2 30 30 H 1.09001 * 109.78825 * 351.13553 * 8 7 2 31 31 H 1.09003 * 109.47999 * 185.38997 * 9 8 7 32 32 H 1.08999 * 109.49401 * 65.36532 * 9 8 7 33 33 H 1.00904 * 110.99911 * 208.64025 * 12 10 9 34 34 H 1.08999 * 110.32308 * 237.78963 * 15 13 12 35 35 H 1.08993 * 110.32772 * 359.97438 * 15 13 12 36 36 H 1.09000 * 110.41168 * 142.62955 * 16 15 13 37 37 H 1.08998 * 110.40991 * 264.95458 * 16 15 13 38 38 H 1.09000 * 109.47110 * 50.12353 * 18 17 16 39 39 H 1.09000 * 109.46498 * 170.12446 * 18 17 16 40 40 H 1.08001 * 120.00359 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.99659 * 180.27248 * 21 20 19 42 42 H 1.07998 * 120.00021 * 179.83370 * 22 21 20 43 43 H 1.08004 * 119.99705 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00315 * 179.97438 * 24 23 22 45 45 H 1.08998 * 110.39308 * 280.64081 * 25 17 16 46 46 H 1.09004 * 110.50256 * 158.14678 * 25 17 16 47 47 H 1.08997 * 109.47972 * 56.37851 * 26 10 9 48 48 H 1.08996 * 109.48230 * 176.42423 * 26 10 9 49 49 H 1.08992 * 109.62819 * 8.95683 * 27 7 2 50 50 H 1.09002 * 109.62503 * 248.38475 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8238 -3.3830 1.1333 10 6 3.3406 -3.5073 0.9811 11 1 3.5740 -3.9122 -0.0037 12 7 3.8615 -4.4103 2.0162 13 6 3.7589 -5.8128 1.5915 14 1 2.8644 -5.9599 0.9863 15 6 5.0161 -6.2257 0.7985 16 6 5.6473 -7.3730 1.6163 17 7 4.5199 -7.9360 2.4032 18 6 5.0123 -8.6791 3.5709 19 6 5.6886 -9.9453 3.1119 20 6 4.9563 -11.1098 2.9762 21 6 5.5757 -12.2702 2.5511 22 6 6.9292 -12.2681 2.2703 23 6 7.6625 -11.1048 2.4110 24 6 7.0423 -9.9434 2.8320 25 6 3.7336 -6.7450 2.8217 26 6 3.9915 -2.1313 1.1324 27 6 3.5171 -1.2164 -0.0011 28 1 -0.4850 0.8400 -0.0004 29 1 1.4194 -3.0188 -0.9552 30 1 0.2030 -2.3438 0.1580 31 1 1.3714 -4.3737 1.0880 32 1 1.5913 -2.9208 2.0926 33 1 4.8124 -4.1739 2.2571 34 1 4.7384 -6.5773 -0.1951 35 1 5.7090 -5.3877 0.7241 36 1 6.0622 -8.1303 0.9512 37 1 6.4206 -6.9861 2.2799 38 1 5.7263 -8.0638 4.1184 39 1 4.1746 -8.9299 4.2216 40 1 3.8996 -11.1124 3.1994 41 1 5.0027 -13.1789 2.4408 42 1 7.4137 -13.1754 1.9407 43 1 8.7201 -11.1033 2.1920 44 1 7.6153 -9.0347 2.9424 45 1 4.2051 -6.2598 3.6762 46 1 2.7091 -7.0292 3.0622 47 1 3.7078 -1.6985 2.0916 48 1 5.0756 -2.2350 1.0864 49 1 3.8982 -0.2078 0.1588 50 1 3.8772 -1.5997 -0.9559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255099998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:38 Heat of formation + Delta-G solvation = 3.086854 kcal Electronic energy + Delta-G solvation = -25880.256472 eV Core-core repulsion = 22484.333843 eV Total energy + Delta-G solvation = -3395.922629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75179 -39.78469 -38.57321 -35.81351 -34.03761 -32.61081 -31.74942 -31.42787 -30.69536 -29.55761 -27.59262 -25.96791 -23.69342 -23.50409 -23.14651 -22.60070 -21.72277 -21.07298 -20.80434 -18.03786 -17.63706 -17.31669 -16.81115 -16.38171 -16.29271 -16.07765 -15.63829 -15.19927 -14.93072 -14.88147 -14.47392 -14.37455 -14.23193 -14.14885 -13.83877 -13.79475 -13.44195 -13.24235 -12.93551 -12.91522 -12.72676 -12.54102 -12.37187 -12.27159 -12.08277 -11.87103 -11.81670 -11.78406 -11.71139 -11.56215 -11.25459 -10.75992 -10.54977 -10.43124 -9.78132 -9.72049 -9.38486 -9.23888 -8.14344 -6.08706 0.45855 0.55060 1.39695 1.41426 1.50223 2.42126 2.74287 3.05671 3.17801 3.44598 3.66265 3.77344 3.97449 3.98471 4.08694 4.18325 4.22346 4.25715 4.30686 4.38455 4.40597 4.56933 4.61054 4.62558 4.68094 4.76641 4.79811 4.80199 4.84886 4.95599 5.00521 5.05345 5.08589 5.12777 5.15553 5.20341 5.21894 5.26093 5.27633 5.31849 5.59084 5.63245 5.65207 5.66392 5.70992 5.79750 5.83525 5.91997 6.02873 6.16972 6.27905 6.38704 6.62869 6.98001 7.48711 8.96837 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.038704 B = 0.002237 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.258106 B =12511.023103 C =12829.286182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.015 3.985 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.495 4.495 8 C 0.005 3.995 9 C -0.081 4.081 10 C 0.116 3.884 11 H 0.029 0.971 12 N -0.680 5.680 13 C 0.086 3.914 14 H 0.068 0.932 15 C -0.148 4.148 16 C 0.046 3.954 17 N -0.515 5.515 18 C 0.085 3.915 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.123 4.123 25 C 0.052 3.948 26 C -0.101 4.101 27 C -0.023 4.023 28 H 0.261 0.739 29 H -0.006 1.006 30 H 0.021 0.979 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.344 0.656 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.125 0.875 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.537 -21.875 7.022 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.514 4.514 8 C -0.033 4.033 9 C -0.119 4.119 10 C 0.007 3.993 11 H 0.047 0.953 12 N -0.312 5.312 13 C -0.025 4.025 14 H 0.086 0.914 15 C -0.188 4.188 16 C -0.082 4.082 17 N -0.239 5.239 18 C -0.042 4.042 19 C -0.087 4.087 20 C -0.133 4.133 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.076 4.076 26 C -0.139 4.139 27 C -0.061 4.061 28 H 0.070 0.930 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.164 0.836 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.143 0.857 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.056 0.944 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 15.471 -22.144 7.095 27.930 hybrid contribution 0.750 1.550 -0.397 1.767 sum 16.221 -20.595 6.699 27.058 Atomic orbital electron populations 1.69998 1.07803 1.27339 1.52417 1.25702 0.95428 1.02073 0.95081 0.85768 0.79399 0.79315 0.78566 1.20108 1.22106 1.17007 1.20665 0.91429 0.91636 1.47673 1.19361 0.96848 0.93971 0.93114 1.21395 0.95004 0.96950 0.98567 1.21106 0.94636 0.91887 0.91678 0.95285 1.60521 1.26971 1.01482 1.42198 1.22243 0.97542 0.87736 0.94979 0.91415 1.23017 0.97486 0.98609 0.99715 1.23002 0.92779 0.95868 0.96591 1.65447 1.18796 1.20205 1.19429 1.21195 0.98841 0.92359 0.91845 1.19813 0.93957 0.94844 1.00085 1.21221 1.00118 0.92650 0.99334 1.21429 0.95451 0.98594 0.99321 1.21461 0.94455 0.98960 0.99883 1.21402 1.00866 0.92833 0.99612 1.21228 0.94279 0.98850 0.99805 1.23005 0.99006 0.89216 0.96363 1.21612 0.97865 0.94993 0.99421 1.19824 0.94505 0.96619 0.95106 0.92973 0.98779 0.96067 0.94584 0.94557 0.83629 0.91591 0.90755 0.90434 0.92962 0.93157 0.89492 0.85703 0.84546 0.84307 0.84449 0.85720 0.92610 0.90241 0.93304 0.91941 0.94434 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 12.74 21.45 0.27 -56.03 16 2 C 0.01 0.82 5.46 84.65 0.46 1.28 16 3 Si 0.94 43.47 27.53 68.60 1.89 45.35 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.25 -10.46 6.11 99.48 0.61 -9.85 16 7 C -0.49 -26.40 5.51 -16.17 -0.09 -26.49 16 8 C 0.01 0.26 5.96 30.10 0.18 0.44 16 9 C -0.08 -3.52 5.43 30.65 0.17 -3.36 16 10 C 0.12 4.23 2.25 44.89 0.10 4.33 16 11 H 0.03 1.10 7.78 -2.39 -0.02 1.08 16 12 N -0.68 -19.93 6.04 -465.02 -2.81 -22.74 16 13 C 0.09 2.26 3.12 45.81 0.14 2.40 16 14 H 0.07 2.08 7.14 -2.39 -0.02 2.06 16 15 C -0.15 -3.33 6.55 31.49 0.21 -3.12 16 16 C 0.05 0.89 5.48 86.45 0.47 1.37 16 17 N -0.51 -10.79 5.36 -885.56 -4.75 -15.53 16 18 C 0.09 1.51 4.97 85.56 0.43 1.94 16 19 C -0.09 -1.55 5.10 -19.87 -0.10 -1.65 16 20 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 21 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 22 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 23 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 24 C -0.12 -2.00 8.73 22.27 0.19 -1.80 16 25 C 0.05 1.20 6.22 86.42 0.54 1.73 16 26 C -0.10 -3.80 5.24 30.65 0.16 -3.63 16 27 C -0.02 -1.01 5.59 30.10 0.17 -0.84 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.02 1.22 7.08 -2.39 -0.02 1.20 16 31 H 0.04 1.47 7.39 -2.39 -0.02 1.46 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.34 8.82 7.75 -89.69 -0.70 8.12 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.59 7.61 -2.39 -0.02 1.57 16 36 H 0.08 1.54 7.81 -2.39 -0.02 1.52 16 37 H 0.05 0.92 7.83 -2.39 -0.02 0.90 16 38 H 0.05 0.83 7.83 -2.39 -0.02 0.82 16 39 H 0.09 1.47 8.07 -2.39 -0.02 1.45 16 40 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.12 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.06 1.24 7.91 -2.39 -0.02 1.22 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.06 1.94 8.05 -2.39 -0.02 1.92 16 49 H 0.04 1.64 4.59 -2.39 -0.01 1.63 16 50 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -61.77 381.76 -1.37 -63.14 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.11 Total: 19.95 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.92 Total: -34.14 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -7.28 Total: -94.30 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.89 Total: 45.35 kcal Total: -61.77 -1.37 -63.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255099998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.224 kcal (2) G-P(sol) polarization free energy of solvation -61.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds