Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99928 * 2 1 4 4 H 1.48495 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47053 * 299.99971 * 3 2 1 6 6 H 1.48503 * 109.46838 * 59.99640 * 3 2 1 7 7 C 1.37876 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00035 * 174.84255 * 7 2 1 9 9 C 1.50699 * 119.99727 * 354.85142 * 7 2 1 10 10 N 1.46898 * 110.01685 * 304.89632 * 9 7 2 11 11 C 1.46899 * 111.00669 * 303.25254 * 10 9 7 12 12 H 1.09001 * 110.86678 * 352.30508 * 11 10 9 13 13 C 1.55140 * 110.98913 * 228.46799 * 11 10 9 14 14 C 1.54318 * 103.01600 * 206.25033 * 13 11 10 15 15 N 1.47446 * 107.23316 * 22.28081 * 14 13 11 16 16 C 1.46905 * 110.99900 * 123.26123 * 15 14 13 17 17 C 1.50699 * 109.47149 * 69.87250 * 16 15 14 18 18 C 1.38235 * 119.99951 * 90.00567 * 17 16 15 19 19 C 1.38234 * 119.99848 * 180.25533 * 18 17 16 20 20 C 1.38234 * 119.99997 * 359.52638 * 19 18 17 21 21 C 1.38236 * 120.00189 * 0.42488 * 20 19 18 22 22 C 1.38234 * 119.99972 * 269.97063 * 17 16 15 23 23 C 1.47835 * 108.56734 * 0.99151 * 15 14 13 24 24 C 1.54263 * 110.03863 * 66.29464 * 9 7 2 25 25 C 1.54967 * 104.15889 * 95.74908 * 24 9 7 26 26 C 1.54893 * 102.77513 * 37.89440 * 25 24 9 27 27 C 1.53878 * 110.02860 * 183.51399 * 9 7 2 28 28 H 0.96996 * 120.00164 * 5.15893 * 1 2 3 29 29 H 1.00900 * 111.00249 * 179.28930 * 10 9 7 30 30 H 1.08996 * 110.71204 * 87.86735 * 13 11 10 31 31 H 1.09005 * 110.70432 * 324.62848 * 13 11 10 32 32 H 1.09001 * 109.88602 * 262.87522 * 14 13 11 33 33 H 1.09004 * 109.89148 * 141.68552 * 14 13 11 34 34 H 1.08999 * 109.46796 * 309.86979 * 16 15 14 35 35 H 1.08997 * 109.47057 * 189.87280 * 16 15 14 36 36 H 1.07998 * 119.99783 * 359.96713 * 18 17 16 37 37 H 1.07999 * 119.99788 * 179.72219 * 19 18 17 38 38 H 1.08004 * 120.00259 * 180.21457 * 20 19 18 39 39 H 1.07994 * 120.00130 * 179.79186 * 21 20 19 40 40 H 1.08001 * 119.99978 * 0.02562 * 22 17 16 41 41 H 1.08998 * 110.37851 * 94.73694 * 23 15 14 42 42 H 1.09011 * 110.37440 * 217.07541 * 23 15 14 43 43 H 1.08990 * 110.48708 * 214.40072 * 24 9 7 44 44 H 1.09004 * 110.48124 * 337.04835 * 24 9 7 45 45 H 1.09000 * 110.72498 * 279.57447 * 25 24 9 46 46 H 1.09009 * 110.91827 * 156.29686 * 25 24 9 47 47 H 1.09005 * 110.48076 * 203.40248 * 26 25 24 48 48 H 1.08994 * 110.48336 * 80.76074 * 26 25 24 49 49 H 1.09003 * 110.03583 * 359.94845 * 27 9 7 50 50 H 1.08995 * 110.03344 * 121.38045 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1959 -0.0835 9 6 1.2556 -2.4964 0.1182 10 7 0.4113 -2.4840 1.3202 11 6 1.2128 -2.2272 2.5242 12 1 2.2775 -2.2347 2.2907 13 6 0.8816 -3.2516 3.6412 14 6 1.2307 -2.4825 4.9328 15 7 1.1838 -1.0443 4.6110 16 6 0.2419 -0.3387 5.4902 17 6 0.8001 -0.2909 6.8892 18 6 1.5982 0.7684 7.2791 19 6 2.1145 0.8096 8.5607 20 6 1.8248 -0.2035 9.4554 21 6 1.0260 -1.2623 9.0659 22 6 0.5135 -1.3059 7.7828 23 6 0.7995 -0.8918 3.1916 24 6 0.3862 -2.7214 -1.1360 25 6 1.2603 -3.6203 -2.0468 26 6 1.9467 -4.5699 -1.0337 27 6 2.2477 -3.6709 0.1832 28 1 -0.4850 0.8366 -0.0755 29 1 -0.1064 -3.3457 1.4074 30 1 1.5019 -4.1425 3.5436 31 1 -0.1764 -3.5134 3.6227 32 1 2.2316 -2.7551 5.2675 33 1 0.5019 -2.7126 5.7099 34 1 -0.7124 -0.8653 5.4975 35 1 0.0936 0.6769 5.1233 36 1 1.8220 1.5614 6.5809 37 1 2.7417 1.6349 8.8639 38 1 2.2254 -0.1696 10.4579 39 1 0.8024 -2.0554 9.7639 40 1 -0.1101 -2.1334 7.4782 41 1 -0.2763 -0.7407 3.1038 42 1 1.3386 -0.0590 2.7399 43 1 -0.5397 -3.2321 -0.8718 44 1 0.1728 -1.7722 -1.6275 45 1 2.0006 -3.0245 -2.5807 46 1 0.6423 -4.1833 -2.7464 47 1 2.8712 -4.9690 -1.4511 48 1 1.2730 -5.3793 -0.7528 49 1 3.2709 -3.2989 0.1287 50 1 2.1026 -4.2316 1.1065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255109259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = 33.604436 kcal Electronic energy + Delta-G solvation = -27142.484659 eV Core-core repulsion = 23747.885371 eV Total energy + Delta-G solvation = -3394.599287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.53453 -38.44187 -37.20106 -33.64297 -32.34283 -31.30193 -30.86687 -29.32104 -27.69248 -27.50313 -26.13648 -24.74274 -23.52217 -22.53229 -21.42809 -20.23722 -20.03575 -19.19824 -18.54721 -16.65490 -16.25846 -15.60909 -15.36079 -15.06576 -14.87869 -14.67495 -14.34891 -13.95614 -13.41658 -13.37441 -13.00577 -12.84016 -12.65293 -12.35652 -12.33657 -12.11986 -12.00381 -11.76968 -11.32646 -11.12932 -10.98468 -10.81178 -10.70570 -10.50135 -10.38716 -10.31067 -10.21511 -10.15923 -9.86573 -9.71975 -9.46602 -9.37691 -8.86806 -8.83867 -8.70262 -8.22504 -7.79834 -6.77160 -5.79630 -3.93390 1.39795 1.45165 3.33763 3.43576 3.47808 3.79755 4.51315 4.58624 4.86102 4.92283 5.02196 5.11822 5.21292 5.26565 5.39466 5.52374 5.53263 5.59216 5.67728 5.74161 5.76021 5.80144 5.84000 5.93920 5.99821 6.08070 6.11726 6.23837 6.31195 6.43578 6.47117 6.48252 6.52985 6.54073 6.58430 6.71730 6.74181 6.75391 6.78906 6.89638 6.98698 7.04747 7.12676 7.19828 7.32473 7.41642 7.48697 7.63243 7.87085 7.93998 8.33067 8.70930 8.91544 9.23881 9.73318 11.20566 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.003860 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.504859 B = 7252.297968 C = 8398.702154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.092 3.908 3 Si 0.864 3.136 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.050 0.950 9 C 0.247 3.753 10 N -0.639 5.639 11 C 0.113 3.887 12 H 0.071 0.929 13 C -0.164 4.164 14 C 0.049 3.951 15 N -0.529 5.529 16 C 0.088 3.912 17 C -0.065 4.065 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.115 4.115 23 C 0.069 3.931 24 C -0.087 4.087 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.149 4.149 28 H 0.251 0.749 29 H 0.301 0.699 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -3.850 12.447 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.114 4.114 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.158 3.842 10 N -0.267 5.267 11 C 0.001 3.999 12 H 0.089 0.911 13 C -0.204 4.204 14 C -0.079 4.079 15 N -0.254 5.254 16 C -0.040 4.040 17 C -0.066 4.066 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.058 4.058 24 C -0.126 4.126 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.189 4.189 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.293 -2.831 12.495 12.816 hybrid contribution 0.228 -0.248 0.076 0.345 sum 0.521 -3.080 12.571 12.953 Atomic orbital electron populations 1.70097 1.05268 1.25236 1.46780 1.24808 0.94442 0.97741 0.94432 0.87012 0.80724 0.85549 0.77477 1.20014 1.21406 1.21004 1.20933 0.92258 0.89760 1.52684 0.93145 1.19163 0.87308 0.91367 0.86401 1.60660 1.27869 1.37263 1.00913 1.22164 0.97673 0.91502 0.88539 0.91089 1.23322 1.00853 0.99178 0.97024 1.22708 1.00572 0.88172 0.96486 1.63691 1.47579 1.09631 1.04511 1.21177 0.93154 1.00167 0.89494 1.19897 0.97122 0.94334 0.95203 1.21074 0.96581 0.98362 0.95862 1.21129 1.00141 0.98855 0.93951 1.21078 0.99254 0.94895 0.99440 1.21069 0.98444 0.98428 0.96214 1.21084 1.00517 0.98186 0.93602 1.22979 0.99384 0.99890 0.83545 1.22198 0.95409 0.98493 0.96493 1.22492 0.99024 0.97413 0.97184 1.22274 0.98700 0.97477 0.97339 1.23113 1.02039 0.98206 0.95514 0.93830 0.88148 0.91975 0.91819 0.91504 0.93494 0.94126 0.90194 0.85976 0.86348 0.86546 0.86464 0.86470 0.93260 0.90150 0.94937 0.90211 0.92135 0.93907 0.93699 0.93384 0.92709 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.10 11.44 55.43 0.63 -21.47 16 2 C 0.09 2.37 4.21 -17.82 -0.07 2.29 16 3 Si 0.86 20.59 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -13.14 6.70 -34.44 -0.23 -13.37 16 8 H 0.05 1.34 7.34 -52.49 -0.39 0.95 16 9 C 0.25 5.53 0.38 -131.64 -0.05 5.48 16 10 N -0.64 -13.73 5.24 -90.88 -0.48 -14.21 16 11 C 0.11 2.26 2.11 -65.58 -0.14 2.12 16 12 H 0.07 1.59 6.52 -51.93 -0.34 1.25 16 13 C -0.16 -2.69 6.29 -24.91 -0.16 -2.85 16 14 C 0.05 0.77 6.26 -2.83 -0.02 0.75 16 15 N -0.53 -9.23 5.15 -232.69 -1.20 -10.43 16 16 C 0.09 1.35 4.75 -4.97 -0.02 1.33 16 17 C -0.07 -0.90 5.11 -104.62 -0.53 -1.44 16 18 C -0.10 -1.33 9.70 -39.58 -0.38 -1.72 16 19 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 20 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 21 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.12 -1.44 8.74 -39.58 -0.35 -1.78 16 23 C 0.07 1.42 6.20 -2.31 -0.01 1.40 16 24 C -0.09 -1.94 5.64 -25.03 -0.14 -2.08 16 25 C -0.12 -2.35 6.91 -24.69 -0.17 -2.52 16 26 C -0.12 -2.15 6.83 -25.07 -0.17 -2.32 16 27 C -0.15 -2.99 5.29 -25.61 -0.14 -3.13 16 28 H 0.25 6.53 8.32 -40.82 -0.34 6.19 16 29 H 0.30 6.09 7.99 -39.29 -0.31 5.78 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.66 5.50 -51.93 -0.29 0.38 16 34 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 35 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.34 6.92 -52.49 -0.36 0.98 16 41 H 0.05 1.07 7.81 -51.93 -0.41 0.67 16 42 H 0.08 1.89 7.46 -51.92 -0.39 1.50 16 43 H 0.03 0.70 7.96 -51.93 -0.41 0.29 16 44 H 0.08 2.01 6.67 -51.93 -0.35 1.66 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.05 1.15 7.37 -51.93 -0.38 0.77 16 50 H 0.04 0.71 7.38 -51.93 -0.38 0.33 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -26.14 380.13 -12.72 -38.86 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.61 Total: 9.16 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -3.78 Total: -23.21 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -1.04 Total: -46.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -26.14 -12.72 -38.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255109259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.469 kcal (2) G-P(sol) polarization free energy of solvation -26.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds