Wall clock time and date at job start Tue Mar 31 2020 11:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99928 * 2 1 4 4 H 1.48495 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47053 * 299.99971 * 3 2 1 6 6 H 1.48503 * 109.46838 * 59.99640 * 3 2 1 7 7 C 1.37876 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00035 * 174.84255 * 7 2 1 9 9 C 1.50699 * 119.99727 * 354.85142 * 7 2 1 10 10 N 1.46898 * 110.01685 * 304.89632 * 9 7 2 11 11 C 1.46899 * 111.00669 * 303.25254 * 10 9 7 12 12 H 1.09001 * 110.86678 * 352.30508 * 11 10 9 13 13 C 1.55140 * 110.98913 * 228.46799 * 11 10 9 14 14 C 1.54318 * 103.01600 * 206.25033 * 13 11 10 15 15 N 1.47446 * 107.23316 * 22.28081 * 14 13 11 16 16 C 1.46905 * 110.99900 * 123.26123 * 15 14 13 17 17 C 1.50699 * 109.47149 * 69.87250 * 16 15 14 18 18 C 1.38235 * 119.99951 * 90.00567 * 17 16 15 19 19 C 1.38234 * 119.99848 * 180.25533 * 18 17 16 20 20 C 1.38234 * 119.99997 * 359.52638 * 19 18 17 21 21 C 1.38236 * 120.00189 * 0.42488 * 20 19 18 22 22 C 1.38234 * 119.99972 * 269.97063 * 17 16 15 23 23 C 1.47835 * 108.56734 * 0.99151 * 15 14 13 24 24 C 1.54263 * 110.03863 * 66.29464 * 9 7 2 25 25 C 1.54967 * 104.15889 * 95.74908 * 24 9 7 26 26 C 1.54893 * 102.77513 * 37.89440 * 25 24 9 27 27 C 1.53878 * 110.02860 * 183.51399 * 9 7 2 28 28 H 0.96996 * 120.00164 * 5.15893 * 1 2 3 29 29 H 1.00900 * 111.00249 * 179.28930 * 10 9 7 30 30 H 1.08996 * 110.71204 * 87.86735 * 13 11 10 31 31 H 1.09005 * 110.70432 * 324.62848 * 13 11 10 32 32 H 1.09001 * 109.88602 * 262.87522 * 14 13 11 33 33 H 1.09004 * 109.89148 * 141.68552 * 14 13 11 34 34 H 1.08999 * 109.46796 * 309.86979 * 16 15 14 35 35 H 1.08997 * 109.47057 * 189.87280 * 16 15 14 36 36 H 1.07998 * 119.99783 * 359.96713 * 18 17 16 37 37 H 1.07999 * 119.99788 * 179.72219 * 19 18 17 38 38 H 1.08004 * 120.00259 * 180.21457 * 20 19 18 39 39 H 1.07994 * 120.00130 * 179.79186 * 21 20 19 40 40 H 1.08001 * 119.99978 * 0.02562 * 22 17 16 41 41 H 1.08998 * 110.37851 * 94.73694 * 23 15 14 42 42 H 1.09011 * 110.37440 * 217.07541 * 23 15 14 43 43 H 1.08990 * 110.48708 * 214.40072 * 24 9 7 44 44 H 1.09004 * 110.48124 * 337.04835 * 24 9 7 45 45 H 1.09000 * 110.72498 * 279.57447 * 25 24 9 46 46 H 1.09009 * 110.91827 * 156.29686 * 25 24 9 47 47 H 1.09005 * 110.48076 * 203.40248 * 26 25 24 48 48 H 1.08994 * 110.48336 * 80.76074 * 26 25 24 49 49 H 1.09003 * 110.03583 * 359.94845 * 27 9 7 50 50 H 1.08995 * 110.03344 * 121.38045 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1959 -0.0835 9 6 1.2556 -2.4964 0.1182 10 7 0.4113 -2.4840 1.3202 11 6 1.2128 -2.2272 2.5242 12 1 2.2775 -2.2347 2.2907 13 6 0.8816 -3.2516 3.6412 14 6 1.2307 -2.4825 4.9328 15 7 1.1838 -1.0443 4.6110 16 6 0.2419 -0.3387 5.4902 17 6 0.8001 -0.2909 6.8892 18 6 1.5982 0.7684 7.2791 19 6 2.1145 0.8096 8.5607 20 6 1.8248 -0.2035 9.4554 21 6 1.0260 -1.2623 9.0659 22 6 0.5135 -1.3059 7.7828 23 6 0.7995 -0.8918 3.1916 24 6 0.3862 -2.7214 -1.1360 25 6 1.2603 -3.6203 -2.0468 26 6 1.9467 -4.5699 -1.0337 27 6 2.2477 -3.6709 0.1832 28 1 -0.4850 0.8366 -0.0755 29 1 -0.1064 -3.3457 1.4074 30 1 1.5019 -4.1425 3.5436 31 1 -0.1764 -3.5134 3.6227 32 1 2.2316 -2.7551 5.2675 33 1 0.5019 -2.7126 5.7099 34 1 -0.7124 -0.8653 5.4975 35 1 0.0936 0.6769 5.1233 36 1 1.8220 1.5614 6.5809 37 1 2.7417 1.6349 8.8639 38 1 2.2254 -0.1696 10.4579 39 1 0.8024 -2.0554 9.7639 40 1 -0.1101 -2.1334 7.4782 41 1 -0.2763 -0.7407 3.1038 42 1 1.3386 -0.0590 2.7399 43 1 -0.5397 -3.2321 -0.8718 44 1 0.1728 -1.7722 -1.6275 45 1 2.0006 -3.0245 -2.5807 46 1 0.6423 -4.1833 -2.7464 47 1 2.8712 -4.9690 -1.4511 48 1 1.2730 -5.3793 -0.7528 49 1 3.2709 -3.2989 0.1287 50 1 2.1026 -4.2316 1.1065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255109259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:54 Heat of formation + Delta-G solvation = 20.253585 kcal Electronic energy + Delta-G solvation = -27143.063595 eV Core-core repulsion = 23747.885371 eV Total energy + Delta-G solvation = -3395.178224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72032 -39.81771 -38.67582 -35.07094 -34.17684 -32.68381 -31.77554 -30.64108 -29.27018 -29.13649 -27.80268 -26.15245 -25.21097 -23.46599 -22.50714 -21.82210 -21.33643 -20.78303 -20.29356 -18.07401 -17.55234 -17.09061 -16.78412 -16.52026 -16.22745 -16.05056 -15.75652 -15.61471 -14.57217 -14.52288 -14.31109 -14.25089 -14.09709 -14.00225 -13.74165 -13.51805 -13.29820 -13.23390 -12.88666 -12.82438 -12.49805 -12.36418 -12.16817 -12.06107 -11.83495 -11.76728 -11.69344 -11.64037 -11.47863 -11.36420 -11.11838 -11.10527 -10.75955 -10.21786 -9.77855 -9.67142 -9.20245 -8.46255 -7.81817 -5.98302 0.46058 0.53895 1.35760 1.43296 1.48201 2.50812 2.80333 3.25136 3.37831 3.71852 3.89080 3.91913 3.98184 4.10390 4.17656 4.20620 4.23835 4.25198 4.31171 4.38897 4.44049 4.57855 4.60907 4.68651 4.79033 4.82260 4.83570 4.87678 5.00766 5.02279 5.08658 5.11431 5.14182 5.17062 5.19819 5.22229 5.28554 5.40010 5.44897 5.53350 5.59342 5.61822 5.64483 5.73632 5.75405 5.85334 6.01223 6.10853 6.15539 6.23062 6.45511 6.85415 7.10104 7.46457 7.70261 9.15825 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.003860 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.504859 B = 7252.297968 C = 8398.702154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.524 4.524 8 H 0.031 0.969 9 C 0.242 3.758 10 N -0.651 5.651 11 C 0.115 3.885 12 H 0.044 0.956 13 C -0.150 4.150 14 C 0.053 3.947 15 N -0.538 5.538 16 C 0.092 3.908 17 C -0.083 4.083 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.122 4.122 23 C 0.084 3.916 24 C -0.085 4.085 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.144 4.144 28 H 0.247 0.753 29 H 0.311 0.689 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.030 0.970 42 H 0.039 0.961 43 H 0.034 0.966 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.036 0.964 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -6.067 14.481 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.216 1.216 7 C -0.563 4.563 8 H 0.049 0.951 9 C 0.152 3.848 10 N -0.279 5.279 11 C 0.003 3.997 12 H 0.062 0.938 13 C -0.189 4.189 14 C -0.075 4.075 15 N -0.263 5.263 16 C -0.035 4.035 17 C -0.084 4.084 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.044 4.044 24 C -0.124 4.124 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.184 4.184 28 H 0.057 0.943 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.055 0.945 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.443 -5.049 14.533 15.391 hybrid contribution 0.216 0.495 -0.487 0.728 sum 0.658 -4.554 14.045 14.780 Atomic orbital electron populations 1.70167 1.05791 1.25133 1.47840 1.25114 0.94847 0.99230 0.94585 0.86444 0.79728 0.83813 0.77080 1.20440 1.21131 1.21584 1.21101 0.91499 0.91552 1.52109 0.95099 1.19125 0.87832 0.90912 0.86917 1.60483 1.28339 1.37950 1.01176 1.22016 0.95770 0.92634 0.89236 0.93807 1.23211 1.01685 0.98652 0.95381 1.22730 1.01452 0.86607 0.96671 1.63589 1.48410 1.11290 1.03019 1.21122 0.93066 0.99092 0.90252 1.19790 0.98453 0.95640 0.94470 1.21167 0.97500 0.98401 0.96913 1.21399 1.00008 0.99861 0.93259 1.21475 0.98381 0.94078 1.00496 1.21428 0.97581 0.99127 0.95966 1.21237 1.00778 0.97963 0.94086 1.22608 0.97254 0.98882 0.85644 1.22076 0.96116 0.97442 0.96789 1.22436 0.98590 0.97216 0.97352 1.22233 0.99922 0.97121 0.95556 1.22976 1.00159 0.97828 0.97420 0.94301 0.87113 0.90281 0.90941 0.91153 0.91319 0.93690 0.91690 0.86922 0.84444 0.83642 0.83703 0.85485 0.95201 0.94242 0.94692 0.93892 0.93322 0.91367 0.91809 0.91251 0.94477 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.63 11.44 21.45 0.25 -46.39 16 2 C 0.07 3.56 4.21 84.65 0.36 3.92 16 3 Si 0.90 43.89 29.54 68.60 2.03 45.91 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.52 -27.51 6.70 25.60 0.17 -27.34 16 8 H 0.03 1.70 7.34 -2.91 -0.02 1.68 16 9 C 0.24 10.92 0.38 3.51 0.00 10.92 16 10 N -0.65 -28.15 5.24 -441.43 -2.31 -30.46 16 11 C 0.12 4.65 2.11 46.30 0.10 4.75 16 12 H 0.04 2.01 6.52 -2.39 -0.02 2.00 16 13 C -0.15 -4.67 6.29 31.77 0.20 -4.47 16 14 C 0.05 1.59 6.26 86.65 0.54 2.13 16 15 N -0.54 -19.03 5.15 -890.10 -4.58 -23.61 16 16 C 0.09 2.88 4.75 85.56 0.41 3.29 16 17 C -0.08 -2.26 5.11 -19.87 -0.10 -2.36 16 18 C -0.12 -3.20 9.70 22.27 0.22 -2.98 16 19 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 20 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 21 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 22 C -0.12 -2.79 8.74 22.27 0.19 -2.59 16 23 C 0.08 3.59 6.20 86.77 0.54 4.13 16 24 C -0.09 -3.79 5.64 31.70 0.18 -3.61 16 25 C -0.12 -4.33 6.91 31.91 0.22 -4.11 16 26 C -0.11 -3.66 6.83 31.67 0.22 -3.45 16 27 C -0.14 -5.65 5.29 31.32 0.17 -5.48 16 28 H 0.25 13.34 8.32 -92.71 -0.77 12.57 16 29 H 0.31 12.28 7.99 -89.69 -0.72 11.56 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.15 7.95 -2.38 -0.02 2.13 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 1.76 5.50 -2.38 -0.01 1.75 16 34 H 0.04 1.34 7.90 -2.39 -0.02 1.32 16 35 H 0.06 2.16 8.02 -2.39 -0.02 2.14 16 36 H 0.11 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.13 2.57 6.92 -2.91 -0.02 2.55 16 41 H 0.03 1.36 7.81 -2.39 -0.02 1.34 16 42 H 0.04 1.97 7.46 -2.38 -0.02 1.96 16 43 H 0.03 1.49 7.96 -2.39 -0.02 1.48 16 44 H 0.04 2.20 6.67 -2.39 -0.02 2.19 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 47 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.04 1.56 7.37 -2.39 -0.02 1.54 16 50 H 0.05 1.78 7.38 -2.39 -0.02 1.77 16 Total: -1.00 -58.57 380.13 -0.36 -58.92 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.19 Total: 29.60 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.08 Total: -33.97 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -6.65 Total: -100.47 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -58.57 -0.36 -58.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255109259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.177 kcal (2) G-P(sol) polarization free energy of solvation -58.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds