Wall clock time and date at job start Tue Mar 31 2020 11:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00236 * 2 1 4 4 H 1.48499 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47030 * 300.00340 * 3 2 1 6 6 H 1.48504 * 109.46880 * 60.00042 * 3 2 1 7 7 C 1.37886 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53943 * 113.73135 * 81.23751 * 9 7 2 11 11 N 1.48305 * 86.05875 * 138.12811 * 10 9 7 12 12 C 1.46902 * 111.00331 * 222.41750 * 11 10 9 13 13 H 1.08998 * 109.57042 * 47.81542 * 12 11 10 14 14 C 1.54518 * 109.57365 * 287.56411 * 12 11 10 15 15 C 1.45877 * 111.67118 * 162.95898 * 14 12 11 16 16 C 1.53980 * 112.67181 * 61.49300 * 15 14 12 17 17 N 1.44293 * 108.31608 * 278.59758 * 16 15 14 18 18 C 1.46901 * 111.00406 * 221.34683 * 17 16 15 19 19 C 1.50702 * 109.47355 * 66.03872 * 18 17 16 20 20 C 1.38234 * 120.00327 * 269.73739 * 19 18 17 21 21 C 1.38237 * 119.99969 * 179.78523 * 20 19 18 22 22 C 1.38241 * 119.99876 * 0.43971 * 21 20 19 23 23 C 1.38238 * 120.00018 * 359.80781 * 22 21 20 24 24 C 1.38237 * 120.00074 * 359.97438 * 23 22 21 25 25 C 1.47939 * 113.64456 * 95.39615 * 17 16 15 26 26 C 1.50536 * 109.57079 * 168.18532 * 12 11 10 27 27 C 1.47959 * 90.75714 * 335.30565 * 11 10 9 28 28 H 0.97001 * 120.00117 * 359.97438 * 1 2 3 29 29 H 1.09001 * 112.94358 * 309.67229 * 9 7 2 30 30 H 1.08997 * 113.75972 * 252.49570 * 10 9 7 31 31 H 1.09004 * 113.75624 * 23.86928 * 10 9 7 32 32 H 1.08994 * 109.04170 * 283.52410 * 14 12 11 33 33 H 1.08995 * 109.04218 * 42.46995 * 14 12 11 34 34 H 1.09002 * 108.84547 * 182.32164 * 15 14 12 35 35 H 1.09001 * 108.84355 * 300.67272 * 15 14 12 36 36 H 1.08998 * 109.69548 * 38.30599 * 16 15 14 37 37 H 1.09008 * 109.69569 * 158.88442 * 16 15 14 38 38 H 1.08993 * 109.47723 * 186.04333 * 18 17 16 39 39 H 1.09009 * 109.46813 * 306.04527 * 18 17 16 40 40 H 1.08001 * 119.99738 * 359.97438 * 20 19 18 41 41 H 1.07994 * 120.00174 * 180.27188 * 21 20 19 42 42 H 1.07996 * 119.99986 * 179.83493 * 22 21 20 43 43 H 1.07994 * 119.99928 * 180.02562 * 23 22 21 44 44 H 1.07989 * 120.00383 * 180.02562 * 24 23 22 45 45 H 1.08992 * 108.71468 * 79.13336 * 25 17 16 46 46 H 1.09003 * 108.70945 * 197.27398 * 25 17 16 47 47 H 1.08997 * 108.79304 * 332.45955 * 26 12 11 48 48 H 1.09004 * 108.78646 * 90.67281 * 26 12 11 49 49 H 1.08998 * 113.76332 * 270.37094 * 27 11 10 50 50 H 1.09006 * 113.85543 * 139.01588 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 0.7547 -2.9280 -1.3933 11 7 1.1871 -4.2949 -1.0137 12 6 1.8731 -4.9591 -2.1301 13 1 2.6171 -4.2850 -2.5544 14 6 0.8430 -5.3428 -3.2160 15 6 1.4879 -5.6321 -4.4921 16 6 2.4604 -6.8231 -4.4090 17 7 3.7115 -6.3499 -3.8678 18 6 4.8513 -6.9464 -4.5772 19 6 4.8686 -6.4558 -6.0021 20 6 4.1940 -7.1582 -6.9832 21 6 4.2063 -6.7057 -8.2894 22 6 4.9007 -5.5559 -8.6160 23 6 5.5795 -4.8563 -7.6358 24 6 5.5635 -5.3063 -6.3288 25 6 3.8368 -6.5433 -2.4065 26 6 2.5471 -6.2107 -1.6348 27 6 2.1609 -3.7399 -0.0479 28 1 -0.4850 0.8400 0.0004 29 1 0.4839 -2.5468 0.7724 30 1 -0.3224 -2.8273 -1.5259 31 1 1.3277 -2.4985 -2.2151 32 1 0.2922 -6.2243 -2.8880 33 1 0.1444 -4.5171 -3.3511 34 1 0.7196 -5.8559 -5.2322 35 1 2.0392 -4.7494 -4.8161 36 1 2.0453 -7.5916 -3.7570 37 1 2.6232 -7.2346 -5.4052 38 1 5.7786 -6.6580 -4.0824 39 1 4.7570 -8.0323 -4.5680 40 1 3.6549 -8.0587 -6.7286 41 1 3.6756 -7.2520 -9.0551 42 1 4.9124 -5.2038 -9.6370 43 1 6.1216 -3.9578 -7.8910 44 1 6.0934 -4.7596 -5.5630 45 1 4.1021 -7.5825 -2.2127 46 1 4.6382 -5.9037 -2.0365 47 1 2.7918 -6.0839 -0.5802 48 1 1.8535 -7.0457 -1.7339 49 1 3.1442 -3.5473 -0.4771 50 1 2.2078 -4.2863 0.8942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255397778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:24 Heat of formation + Delta-G solvation = 62.525618 kcal Electronic energy + Delta-G solvation = -26697.155608 eV Core-core repulsion = 23303.810438 eV Total energy + Delta-G solvation = -3393.345171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.05589 -39.18222 -37.69803 -34.55125 -32.61604 -32.18723 -31.19848 -30.96895 -28.00266 -26.73535 -25.31186 -24.80206 -23.95985 -22.70262 -22.46777 -21.22008 -19.99256 -19.36880 -18.47970 -16.95422 -16.66456 -16.02021 -15.85694 -15.44384 -14.96485 -14.76644 -14.45119 -14.35741 -13.97523 -13.67878 -13.52698 -13.30499 -13.12614 -12.81232 -12.65301 -12.49590 -12.07886 -12.01777 -11.49941 -11.47807 -11.25200 -11.09928 -11.02578 -10.98017 -10.84049 -10.59312 -10.51378 -10.38228 -10.33718 -9.95608 -9.50375 -9.02886 -9.00097 -8.89924 -8.89060 -8.38819 -8.18404 -7.72429 -6.00222 -4.04001 1.19363 1.27735 3.30677 3.38844 3.42636 3.53277 4.06659 4.44166 4.59593 4.66924 4.75190 4.86413 4.95417 5.04332 5.04899 5.18601 5.20199 5.24494 5.31163 5.34724 5.36391 5.46242 5.52926 5.63720 5.73177 5.82451 5.86368 5.90041 5.91766 5.97212 6.10346 6.27101 6.29958 6.32325 6.37169 6.38079 6.44602 6.48825 6.54062 6.57721 6.68691 6.73997 6.81058 6.85896 6.97295 7.08677 7.23558 7.27242 7.37726 7.79545 7.98220 8.22831 8.43852 8.98536 9.60503 11.09291 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.003270 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.311225 B = 8559.951841 C = 9533.949800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.038 3.962 10 C 0.018 3.982 11 N -0.491 5.491 12 C 0.064 3.936 13 H 0.052 0.948 14 C -0.104 4.104 15 C -0.108 4.108 16 C 0.057 3.943 17 N -0.540 5.540 18 C 0.097 3.903 19 C -0.073 4.073 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.097 4.097 25 C 0.067 3.933 26 C -0.109 4.109 27 C 0.000 4.000 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 -16.044 -14.186 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.110 4.110 11 N -0.214 5.214 12 C -0.046 4.046 13 H 0.070 0.930 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.071 4.071 17 N -0.265 5.265 18 C -0.030 4.030 19 C -0.073 4.073 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.115 4.115 25 C -0.060 4.060 26 C -0.147 4.147 27 C -0.128 4.128 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.287 -15.956 -14.029 22.805 hybrid contribution 0.967 0.655 -0.336 1.215 sum 9.254 -15.301 -14.365 22.937 Atomic orbital electron populations 1.69975 1.05946 1.26480 1.50063 1.25004 0.94796 0.99054 0.94814 0.86598 0.80220 0.83967 0.77586 1.19758 1.21034 1.20985 1.21144 0.92774 0.90454 1.50993 0.92517 1.20296 0.93706 0.91024 0.93029 1.23999 0.99660 0.86520 1.00870 1.68603 1.26190 1.16903 1.09741 1.21784 0.94882 0.95360 0.92548 0.92955 1.20467 0.98039 1.01260 0.94460 1.20419 0.97617 0.98975 0.97598 1.21946 0.89673 0.96346 0.99110 1.60706 1.01685 1.60666 1.03438 1.21001 0.95050 0.96138 0.90817 1.19759 0.97357 0.95561 0.94661 1.21035 0.99302 1.00028 0.93015 1.21085 0.99717 0.96959 0.96285 1.21133 0.97946 0.95727 0.99319 1.21171 0.99677 0.99793 0.93231 1.21051 0.98787 0.95420 0.96262 1.22392 0.98882 0.98681 0.86052 1.21380 0.95390 0.98235 0.99718 1.23984 0.95383 0.97836 0.95635 0.93030 0.92567 0.91752 0.92933 0.92765 0.91917 0.92739 0.91351 0.94115 0.91185 0.90099 0.94276 0.86422 0.86315 0.86349 0.86143 0.85935 0.95251 0.91102 0.90803 0.92486 0.92861 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.24 8.77 -34.44 -0.30 -14.54 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 0.98 3.60 -90.83 -0.33 0.65 16 10 C 0.02 0.43 6.60 -2.56 -0.02 0.41 16 11 N -0.49 -10.05 5.97 -230.53 -1.38 -11.42 16 12 C 0.06 1.09 1.22 -68.15 -0.08 1.01 16 13 H 0.05 1.01 7.36 -51.93 -0.38 0.63 16 14 C -0.10 -1.63 4.90 -29.31 -0.14 -1.78 16 15 C -0.11 -1.46 5.37 -29.59 -0.16 -1.62 16 16 C 0.06 0.68 5.11 -4.71 -0.02 0.66 16 17 N -0.54 -6.57 4.00 -236.08 -0.94 -7.51 16 18 C 0.10 0.99 5.02 -4.97 -0.02 0.97 16 19 C -0.07 -0.77 5.02 -104.62 -0.52 -1.29 16 20 C -0.12 -1.12 8.14 -39.58 -0.32 -1.44 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 25 C 0.07 0.83 5.38 -2.77 -0.01 0.82 16 26 C -0.11 -1.58 4.87 -27.48 -0.13 -1.72 16 27 C 0.00 0.01 6.30 -2.76 -0.02 -0.01 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.05 1.28 7.72 -51.93 -0.40 0.88 16 32 H 0.05 0.82 7.59 -51.93 -0.39 0.43 16 33 H 0.06 1.08 7.28 -51.93 -0.38 0.70 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.04 0.48 6.79 -51.93 -0.35 0.13 16 37 H 0.07 0.75 4.53 -51.92 -0.23 0.51 16 38 H 0.08 0.78 7.98 -51.93 -0.41 0.36 16 39 H 0.04 0.37 8.06 -51.92 -0.42 -0.05 16 40 H 0.12 0.98 7.14 -52.49 -0.37 0.60 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.03 0.32 8.02 -51.93 -0.42 -0.09 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.12 6.92 -51.93 -0.36 0.76 16 48 H 0.06 0.80 6.66 -51.93 -0.35 0.45 16 49 H 0.05 1.13 7.77 -51.93 -0.40 0.73 16 50 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -29.02 380.64 -13.28 -42.30 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.64 Total: 1.90 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.77 Total: -22.20 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.58 Total: -44.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.02 -13.28 -42.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255397778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.821 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds