Wall clock time and date at job start Tue Mar 31 2020 11:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00236 * 2 1 4 4 H 1.48499 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47030 * 300.00340 * 3 2 1 6 6 H 1.48504 * 109.46880 * 60.00042 * 3 2 1 7 7 C 1.37886 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53943 * 113.73135 * 81.23751 * 9 7 2 11 11 N 1.48305 * 86.05875 * 138.12811 * 10 9 7 12 12 C 1.46902 * 111.00331 * 222.41750 * 11 10 9 13 13 H 1.08998 * 109.57042 * 47.81542 * 12 11 10 14 14 C 1.54518 * 109.57365 * 287.56411 * 12 11 10 15 15 C 1.45877 * 111.67118 * 162.95898 * 14 12 11 16 16 C 1.53980 * 112.67181 * 61.49300 * 15 14 12 17 17 N 1.44293 * 108.31608 * 278.59758 * 16 15 14 18 18 C 1.46901 * 111.00406 * 221.34683 * 17 16 15 19 19 C 1.50702 * 109.47355 * 66.03872 * 18 17 16 20 20 C 1.38234 * 120.00327 * 269.73739 * 19 18 17 21 21 C 1.38237 * 119.99969 * 179.78523 * 20 19 18 22 22 C 1.38241 * 119.99876 * 0.43971 * 21 20 19 23 23 C 1.38238 * 120.00018 * 359.80781 * 22 21 20 24 24 C 1.38237 * 120.00074 * 359.97438 * 23 22 21 25 25 C 1.47939 * 113.64456 * 95.39615 * 17 16 15 26 26 C 1.50536 * 109.57079 * 168.18532 * 12 11 10 27 27 C 1.47959 * 90.75714 * 335.30565 * 11 10 9 28 28 H 0.97001 * 120.00117 * 359.97438 * 1 2 3 29 29 H 1.09001 * 112.94358 * 309.67229 * 9 7 2 30 30 H 1.08997 * 113.75972 * 252.49570 * 10 9 7 31 31 H 1.09004 * 113.75624 * 23.86928 * 10 9 7 32 32 H 1.08994 * 109.04170 * 283.52410 * 14 12 11 33 33 H 1.08995 * 109.04218 * 42.46995 * 14 12 11 34 34 H 1.09002 * 108.84547 * 182.32164 * 15 14 12 35 35 H 1.09001 * 108.84355 * 300.67272 * 15 14 12 36 36 H 1.08998 * 109.69548 * 38.30599 * 16 15 14 37 37 H 1.09008 * 109.69569 * 158.88442 * 16 15 14 38 38 H 1.08993 * 109.47723 * 186.04333 * 18 17 16 39 39 H 1.09009 * 109.46813 * 306.04527 * 18 17 16 40 40 H 1.08001 * 119.99738 * 359.97438 * 20 19 18 41 41 H 1.07994 * 120.00174 * 180.27188 * 21 20 19 42 42 H 1.07996 * 119.99986 * 179.83493 * 22 21 20 43 43 H 1.07994 * 119.99928 * 180.02562 * 23 22 21 44 44 H 1.07989 * 120.00383 * 180.02562 * 24 23 22 45 45 H 1.08992 * 108.71468 * 79.13336 * 25 17 16 46 46 H 1.09003 * 108.70945 * 197.27398 * 25 17 16 47 47 H 1.08997 * 108.79304 * 332.45955 * 26 12 11 48 48 H 1.09004 * 108.78646 * 90.67281 * 26 12 11 49 49 H 1.08998 * 113.76332 * 270.37094 * 27 11 10 50 50 H 1.09006 * 113.85543 * 139.01588 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 0.7547 -2.9280 -1.3933 11 7 1.1871 -4.2949 -1.0137 12 6 1.8731 -4.9591 -2.1301 13 1 2.6171 -4.2850 -2.5544 14 6 0.8430 -5.3428 -3.2160 15 6 1.4879 -5.6321 -4.4921 16 6 2.4604 -6.8231 -4.4090 17 7 3.7115 -6.3499 -3.8678 18 6 4.8513 -6.9464 -4.5772 19 6 4.8686 -6.4558 -6.0021 20 6 4.1940 -7.1582 -6.9832 21 6 4.2063 -6.7057 -8.2894 22 6 4.9007 -5.5559 -8.6160 23 6 5.5795 -4.8563 -7.6358 24 6 5.5635 -5.3063 -6.3288 25 6 3.8368 -6.5433 -2.4065 26 6 2.5471 -6.2107 -1.6348 27 6 2.1609 -3.7399 -0.0479 28 1 -0.4850 0.8400 0.0004 29 1 0.4839 -2.5468 0.7724 30 1 -0.3224 -2.8273 -1.5259 31 1 1.3277 -2.4985 -2.2151 32 1 0.2922 -6.2243 -2.8880 33 1 0.1444 -4.5171 -3.3511 34 1 0.7196 -5.8559 -5.2322 35 1 2.0392 -4.7494 -4.8161 36 1 2.0453 -7.5916 -3.7570 37 1 2.6232 -7.2346 -5.4052 38 1 5.7786 -6.6580 -4.0824 39 1 4.7570 -8.0323 -4.5680 40 1 3.6549 -8.0587 -6.7286 41 1 3.6756 -7.2520 -9.0551 42 1 4.9124 -5.2038 -9.6370 43 1 6.1216 -3.9578 -7.8910 44 1 6.0934 -4.7596 -5.5630 45 1 4.1021 -7.5825 -2.2127 46 1 4.6382 -5.9037 -2.0365 47 1 2.7918 -6.0839 -0.5802 48 1 1.8535 -7.0457 -1.7339 49 1 3.1442 -3.5473 -0.4771 50 1 2.2078 -4.2863 0.8942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255397778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:23 Heat of formation + Delta-G solvation = 46.449886 kcal Electronic energy + Delta-G solvation = -26697.852704 eV Core-core repulsion = 23303.810438 eV Total energy + Delta-G solvation = -3394.042267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23934 -40.31047 -38.89909 -35.77643 -34.50114 -33.35220 -32.19065 -31.73209 -29.56129 -27.97286 -26.87961 -26.40800 -25.14123 -24.04090 -23.40563 -21.98282 -21.21057 -20.65748 -20.32935 -18.57710 -17.67847 -17.31145 -16.86871 -16.52561 -16.23315 -16.19532 -15.77248 -15.72478 -15.25905 -14.95445 -14.59049 -14.29255 -14.06086 -13.98548 -13.87912 -13.72767 -13.38556 -13.27977 -13.20210 -12.88838 -12.80813 -12.58989 -12.36120 -12.18196 -12.09725 -11.92772 -11.77617 -11.63483 -11.55724 -11.40289 -11.14935 -10.97330 -10.79512 -10.48965 -9.74670 -9.63665 -9.52613 -9.05348 -8.14882 -6.26042 0.46758 0.55466 1.40069 1.41560 1.53413 2.41913 2.74885 3.14638 3.18642 3.25801 3.79076 3.86015 3.92169 4.00402 4.07830 4.12361 4.20007 4.28052 4.29558 4.32826 4.42815 4.48679 4.52592 4.62290 4.66097 4.66849 4.68110 4.76210 4.79865 4.84370 4.86700 4.89143 4.97080 5.11234 5.14451 5.16621 5.20485 5.21821 5.27237 5.29846 5.36243 5.50028 5.60470 5.64318 5.67200 5.68146 5.75712 5.86784 6.14230 6.22127 6.31129 6.36126 6.48839 6.82661 7.42082 8.94766 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.003270 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.311225 B = 8559.951841 C = 9533.949800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.021 3.979 10 C 0.031 3.969 11 N -0.485 5.485 12 C 0.066 3.934 13 H 0.031 0.969 14 C -0.097 4.097 15 C -0.103 4.103 16 C 0.064 3.936 17 N -0.557 5.557 18 C 0.101 3.899 19 C -0.085 4.085 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.116 4.116 25 C 0.073 3.927 26 C -0.103 4.103 27 C 0.019 3.981 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.119 0.881 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.055 0.945 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.076 -17.611 -15.342 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.098 4.098 11 N -0.208 5.208 12 C -0.043 4.043 13 H 0.049 0.951 14 C -0.135 4.135 15 C -0.141 4.141 16 C -0.064 4.064 17 N -0.282 5.282 18 C -0.026 4.026 19 C -0.085 4.085 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.135 4.135 25 C -0.054 4.054 26 C -0.142 4.142 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.137 0.863 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.452 -17.539 -15.185 25.050 hybrid contribution 0.590 1.130 -0.005 1.275 sum 10.042 -16.409 -15.190 24.512 Atomic orbital electron populations 1.70096 1.07457 1.27438 1.50997 1.25814 0.95624 1.02619 0.94425 0.85541 0.79157 0.79510 0.77681 1.18917 1.20655 1.20372 1.21457 0.92916 0.91715 1.50892 0.92600 1.20284 0.94118 0.92328 0.93072 1.23666 0.98289 0.88555 0.99321 1.68555 1.26494 1.15002 1.10745 1.21807 0.94749 0.95927 0.91775 0.95129 1.20430 0.97326 1.00657 0.95103 1.20363 0.98195 0.99076 0.96502 1.21882 0.89059 0.95319 1.00170 1.60622 1.02473 1.61661 1.03405 1.21005 0.94303 0.96826 0.90457 1.19870 0.97818 0.95756 0.95086 1.21259 0.99177 1.00458 0.93096 1.21414 0.99445 0.96944 0.96732 1.21441 0.97510 0.95751 1.00140 1.21403 1.00070 1.00427 0.93227 1.21191 0.99553 0.96018 0.96735 1.22284 0.97219 0.99831 0.86080 1.21308 0.96493 0.96717 0.99634 1.23798 0.94741 0.95836 0.96624 0.92891 0.95717 0.93443 0.94244 0.91743 0.94298 0.91183 0.93595 0.93451 0.89641 0.89866 0.92760 0.84877 0.84185 0.84478 0.85126 0.86334 0.92998 0.91620 0.91374 0.91467 0.92667 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 13.29 21.45 0.28 -54.73 16 2 C 0.01 0.81 5.46 84.66 0.46 1.28 16 3 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.53 -29.96 8.77 25.60 0.22 -29.73 16 8 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.02 1.10 3.60 -10.89 -0.04 1.06 16 10 C 0.03 1.51 6.60 86.35 0.57 2.08 16 11 N -0.49 -20.02 5.97 -883.28 -5.27 -25.29 16 12 C 0.07 2.26 1.22 44.63 0.05 2.32 16 13 H 0.03 1.20 7.36 -2.39 -0.02 1.18 16 14 C -0.10 -2.99 4.90 28.93 0.14 -2.85 16 15 C -0.10 -2.67 5.37 28.74 0.15 -2.51 16 16 C 0.06 1.36 5.11 87.12 0.44 1.80 16 17 N -0.56 -12.48 4.00 -900.83 -3.60 -16.08 16 18 C 0.10 1.85 5.02 85.56 0.43 2.28 16 19 C -0.08 -1.66 5.02 -19.86 -0.10 -1.76 16 20 C -0.12 -2.07 8.14 22.27 0.18 -1.89 16 21 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 24 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 25 C 0.07 1.65 5.38 86.42 0.46 2.11 16 26 C -0.10 -2.82 4.87 30.11 0.15 -2.67 16 27 C 0.02 0.80 6.30 86.41 0.54 1.34 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.04 2.00 7.72 -2.38 -0.02 1.98 16 32 H 0.06 1.85 7.59 -2.39 -0.02 1.83 16 33 H 0.04 1.36 7.28 -2.39 -0.02 1.34 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.05 0.96 6.79 -2.39 -0.02 0.95 16 37 H 0.09 1.57 4.53 -2.38 -0.01 1.56 16 38 H 0.08 1.47 7.98 -2.39 -0.02 1.45 16 39 H 0.05 0.84 8.06 -2.38 -0.02 0.82 16 40 H 0.13 1.78 7.14 -2.91 -0.02 1.76 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.12 2.43 8.06 -2.92 -0.02 2.41 16 45 H 0.05 0.96 8.02 -2.39 -0.02 0.94 16 46 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 1.95 6.92 -2.39 -0.02 1.93 16 48 H 0.07 1.71 6.66 -2.39 -0.02 1.69 16 49 H 0.06 2.34 7.77 -2.39 -0.02 2.32 16 50 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -63.31 380.64 -1.11 -64.42 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.89 Total: 20.87 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.57 Total: -35.40 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -8.59 Total: -96.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -63.31 -1.11 -64.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255397778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.870 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds