Wall clock time and date at job start Tue Mar 31 2020 11:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00161 * 2 1 4 4 H 1.48496 * 109.47153 * 185.28377 * 3 2 1 5 5 H 1.48500 * 109.46879 * 305.27942 * 3 2 1 6 6 H 1.48501 * 109.47330 * 65.28020 * 3 2 1 7 7 C 1.37878 * 119.99508 * 179.97438 * 2 1 3 8 8 C 1.51273 * 120.84718 * 195.08345 * 7 2 1 9 9 C 1.53231 * 108.53582 * 128.63396 * 8 7 2 10 10 C 1.52964 * 109.40415 * 54.62874 * 9 8 7 11 11 H 1.09002 * 109.35346 * 56.46922 * 10 9 8 12 12 N 1.46894 * 109.41341 * 176.29517 * 10 9 8 13 13 C 1.46907 * 110.99949 * 271.61217 * 12 10 9 14 14 C 1.53124 * 109.51841 * 273.42003 * 13 12 10 15 15 C 1.53041 * 109.27468 * 182.44151 * 14 13 12 16 16 N 1.46841 * 109.52233 * 59.17930 * 15 14 13 17 17 C 1.39678 * 110.99916 * 174.16115 * 16 15 14 18 18 C 1.38910 * 120.07326 * 180.02562 * 17 16 15 19 19 C 1.38109 * 119.92193 * 180.02562 * 18 17 16 20 20 C 1.38286 * 120.07339 * 0.27510 * 19 18 17 21 21 C 1.38282 * 120.15107 * 359.44705 * 20 19 18 22 22 C 1.38106 * 120.07499 * 0.55462 * 21 20 19 23 23 C 1.46852 * 111.19979 * 298.25836 * 16 15 14 24 24 C 1.53033 * 109.52506 * 61.74349 * 23 16 15 25 25 C 1.52960 * 109.81414 * 296.40313 * 10 9 8 26 26 C 1.51265 * 120.85499 * 15.06749 * 7 2 1 27 27 H 0.97006 * 120.00200 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.62773 * 248.34680 * 8 7 2 29 29 H 1.08997 * 109.62395 * 8.92371 * 8 7 2 30 30 H 1.09001 * 109.48244 * 294.65343 * 9 8 7 31 31 H 1.08999 * 109.48211 * 174.60945 * 9 8 7 32 32 H 1.00901 * 110.99869 * 35.56646 * 12 10 9 33 33 H 1.08998 * 109.57268 * 33.57919 * 13 12 10 34 34 H 1.09000 * 109.50362 * 62.49992 * 14 13 12 35 35 H 1.09002 * 109.50578 * 302.38015 * 14 13 12 36 36 H 1.08997 * 109.46055 * 299.16508 * 15 14 13 37 37 H 1.08997 * 109.46119 * 179.19642 * 15 14 13 38 38 H 1.07998 * 120.04173 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.96146 * 179.97438 * 19 18 17 40 40 H 1.08004 * 119.92248 * 179.69730 * 20 19 18 41 41 H 1.07998 * 119.96501 * 180.25583 * 21 20 19 42 42 H 1.07999 * 120.04098 * 179.70354 * 22 21 20 43 43 H 1.08998 * 109.45913 * 181.76224 * 23 16 15 44 44 H 1.08995 * 109.46096 * 301.72180 * 23 16 15 45 45 H 1.08996 * 109.50357 * 180.87849 * 24 23 16 46 46 H 1.09001 * 109.50375 * 60.76041 * 24 23 16 47 47 H 1.09009 * 109.47863 * 183.57635 * 25 10 9 48 48 H 1.08991 * 109.48306 * 303.61566 * 25 10 9 49 49 H 1.09001 * 109.62851 * 111.64807 * 26 7 2 50 50 H 1.09001 * 109.78308 * 351.17296 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3493 -0.1289 5 1 1.7963 2.4507 -1.1430 6 1 1.9896 2.3392 1.2718 7 6 2.0044 -1.1941 0.0005 8 6 3.4782 -1.2388 0.3385 9 6 3.6974 -2.2994 1.4226 10 6 3.1179 -3.6345 0.9519 11 1 3.5738 -3.9111 0.0013 12 7 3.4059 -4.6713 1.9518 13 6 4.7066 -5.3040 1.6945 14 6 4.5276 -6.4564 0.7022 15 6 5.8745 -7.1498 0.4850 16 7 6.3772 -7.6581 1.7676 17 6 7.5398 -8.4108 1.5866 18 6 8.1757 -8.9835 2.6809 19 6 9.3254 -9.7267 2.4984 20 6 9.8467 -9.8963 1.2288 21 6 9.2130 -9.3324 0.1367 22 6 8.0630 -8.5880 0.3120 23 6 6.6017 -6.5641 2.7211 24 6 5.2766 -5.8532 3.0052 25 6 1.6042 -3.5080 0.7720 26 6 1.3062 -2.4930 -0.3365 27 1 -0.4851 0.8401 -0.0004 28 1 4.0501 -1.5014 -0.5514 29 1 3.7985 -0.2651 0.7090 30 1 3.1978 -1.9896 2.3405 31 1 4.7652 -2.4124 1.6099 32 1 3.3663 -4.2933 2.8865 33 1 5.3945 -4.5682 1.2780 34 1 4.1621 -6.0655 -0.2474 35 1 3.8098 -7.1727 1.1020 36 1 6.5878 -6.4364 0.0723 37 1 5.7477 -7.9798 -0.2101 38 1 7.7720 -8.8470 3.6732 39 1 9.8205 -10.1718 3.3487 40 1 10.7486 -10.4739 1.0895 41 1 9.6205 -9.4702 -0.8539 42 1 7.5712 -8.1438 -0.5407 43 1 7.0032 -6.9688 3.6502 44 1 7.3117 -5.8535 2.2980 45 1 5.4463 -5.0315 3.7009 46 1 4.5706 -6.5601 3.4412 47 1 1.1884 -4.4778 0.4983 48 1 1.1542 -3.1697 1.7053 49 1 1.6771 -2.8716 -1.2890 50 1 0.2308 -2.3276 -0.4020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258504545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:13 Heat of formation + Delta-G solvation = 3.277523 kcal Electronic energy + Delta-G solvation = -26268.254330 eV Core-core repulsion = 22872.339969 eV Total energy + Delta-G solvation = -3395.914361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35721 -39.65622 -38.39945 -36.11888 -34.14367 -32.57703 -32.17158 -31.41962 -31.28971 -29.65799 -27.91064 -25.04392 -24.74502 -23.40119 -22.99537 -22.60256 -22.05127 -21.00891 -20.55139 -18.65238 -18.10108 -16.74371 -16.55223 -16.40313 -16.29093 -16.14417 -15.70296 -15.21239 -14.98324 -14.83837 -14.69859 -14.45750 -14.33698 -14.25089 -13.97548 -13.79246 -13.52246 -13.28822 -12.94691 -12.82129 -12.72518 -12.57115 -12.33061 -12.31209 -12.12876 -11.95532 -11.83578 -11.65420 -11.55055 -11.38780 -11.26027 -10.79586 -10.65450 -10.58789 -10.40931 -9.82701 -9.17192 -8.75241 -8.18755 -6.06851 0.48942 0.51799 1.35206 1.40871 1.50038 2.40713 2.66005 2.97737 3.04696 3.25591 3.72911 3.83166 3.99780 4.10400 4.11536 4.18781 4.21000 4.30600 4.31990 4.34774 4.48789 4.54774 4.56942 4.60544 4.64714 4.69509 4.75704 4.77580 4.81971 4.89367 5.02984 5.09166 5.09584 5.10147 5.16622 5.18693 5.25704 5.28694 5.38377 5.42497 5.43505 5.55179 5.58295 5.64063 5.68944 5.78774 5.88514 5.90617 6.06917 6.29028 6.37590 6.39133 6.62935 6.97256 7.47838 8.92843 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.002458 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.338619 B =11390.046159 C =11522.284698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.247 1.247 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.500 4.500 8 C -0.015 4.015 9 C -0.123 4.123 10 C 0.115 3.885 11 H 0.058 0.942 12 N -0.683 5.683 13 C 0.088 3.912 14 C -0.100 4.100 15 C 0.060 3.940 16 N -0.494 5.494 17 C 0.098 3.902 18 C -0.154 4.154 19 C -0.100 4.100 20 C -0.157 4.157 21 C -0.102 4.102 22 C -0.189 4.189 23 C 0.067 3.933 24 C -0.112 4.112 25 C -0.080 4.080 26 C 0.005 3.995 27 H 0.262 0.738 28 H 0.015 0.985 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.342 0.658 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.039 0.961 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.042 0.958 48 H 0.032 0.968 49 H -0.002 1.002 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.910 -18.114 5.559 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.171 1.171 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.520 4.520 8 C -0.053 4.053 9 C -0.163 4.163 10 C 0.006 3.994 11 H 0.076 0.924 12 N -0.313 5.313 13 C -0.022 4.022 14 C -0.138 4.138 15 C -0.068 4.068 16 N -0.209 5.209 17 C 0.000 4.000 18 C -0.174 4.174 19 C -0.118 4.118 20 C -0.175 4.175 21 C -0.120 4.120 22 C -0.209 4.209 23 C -0.059 4.059 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.033 4.033 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.114 0.886 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.017 0.983 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 18.958 -18.741 5.459 27.211 hybrid contribution 0.642 2.333 -0.360 2.446 sum 19.600 -16.408 5.099 26.065 Atomic orbital electron populations 1.70049 1.07810 1.27371 1.51336 1.25617 0.95219 1.01851 0.94994 0.85891 0.80561 0.80104 0.77449 1.17050 1.21431 1.20857 1.20595 0.93951 0.92544 1.44867 1.19740 0.94958 0.95701 0.94908 1.22091 0.98239 0.96896 0.99042 1.21195 0.95423 0.88672 0.94155 0.92403 1.60660 1.31061 1.33319 1.06248 1.21562 0.89295 0.94997 0.96373 1.21541 0.96292 0.96930 0.99069 1.22213 0.95906 0.98676 0.89981 1.59037 1.26525 1.23022 1.12335 1.19207 0.89276 0.97112 0.94387 1.20999 0.97448 1.00824 0.98160 1.21326 0.95167 0.97161 0.98179 1.21391 1.01485 1.02039 0.92621 1.21297 0.94634 0.96114 0.99983 1.21528 0.98464 1.04160 0.96798 1.22186 0.96840 0.90782 0.96076 1.21751 0.96464 1.00352 0.96418 1.21350 0.95045 0.96940 0.98535 1.19376 0.96890 0.93644 0.93414 0.92898 0.96690 0.95116 0.93513 0.92954 0.83896 0.94827 0.92137 0.91242 0.93833 0.89464 0.85122 0.83853 0.84210 0.84483 0.85388 0.88598 0.94288 0.90024 0.90369 0.93946 0.94933 0.98330 0.96050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 12.81 21.45 0.27 -54.78 16 2 C 0.02 1.20 5.43 84.66 0.46 1.66 16 3 Si 0.93 43.12 27.64 68.60 1.90 45.02 16 4 H -0.25 -10.63 6.12 99.48 0.61 -10.02 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.50 -26.50 5.45 -16.17 -0.09 -26.59 16 8 C -0.01 -0.67 5.47 30.11 0.16 -0.51 16 9 C -0.12 -4.69 5.17 30.66 0.16 -4.53 16 10 C 0.12 4.21 2.17 44.89 0.10 4.31 16 11 H 0.06 2.19 7.25 -2.39 -0.02 2.17 16 12 N -0.68 -20.30 6.07 -469.18 -2.85 -23.15 16 13 C 0.09 2.18 2.35 44.99 0.11 2.28 16 14 C -0.10 -2.43 5.59 30.65 0.17 -2.26 16 15 C 0.06 1.25 4.15 86.33 0.36 1.60 16 16 N -0.49 -10.19 4.70 -695.41 -3.27 -13.46 16 17 C 0.10 1.96 5.64 38.21 0.22 2.18 16 18 C -0.15 -2.69 9.16 22.40 0.21 -2.49 16 19 C -0.10 -1.46 10.04 22.25 0.22 -1.23 16 20 C -0.16 -2.23 10.04 22.29 0.22 -2.01 16 21 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 22 C -0.19 -3.56 8.82 22.40 0.20 -3.36 16 23 C 0.07 1.24 5.26 86.32 0.45 1.69 16 24 C -0.11 -2.22 5.35 30.64 0.16 -2.05 16 25 C -0.08 -3.48 5.54 30.66 0.17 -3.31 16 26 C 0.00 0.25 5.99 30.10 0.18 0.43 16 27 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 28 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.03 1.36 4.99 -2.39 -0.01 1.35 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.72 7.68 -2.39 -0.02 1.71 16 32 H 0.34 9.60 8.04 -89.69 -0.72 8.87 16 33 H 0.03 0.90 7.36 -2.39 -0.02 0.89 16 34 H 0.06 1.60 7.63 -2.39 -0.02 1.58 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 0.91 7.73 -2.39 -0.02 0.89 16 37 H 0.09 1.72 6.98 -2.39 -0.02 1.70 16 38 H 0.13 1.99 7.15 -2.91 -0.02 1.97 16 39 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.13 2.26 5.81 -2.91 -0.02 2.24 16 43 H 0.10 1.49 6.71 -2.39 -0.02 1.48 16 44 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 50 H 0.02 1.21 7.11 -2.39 -0.02 1.19 16 Total: -1.00 -61.19 373.42 -0.17 -61.36 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.10 Total: 20.59 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 3.68 Total: -35.58 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -5.84 Total: -91.39 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.90 Total: 45.02 kcal Total: -61.19 -0.17 -61.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258504545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.635 kcal (2) G-P(sol) polarization free energy of solvation -61.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds