Wall clock time and date at job start Tue Mar 31 2020 11:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 120.00162 * 2 1 4 4 H 1.48502 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47021 * 300.00377 * 3 2 1 6 6 H 1.48502 * 109.46610 * 59.99684 * 3 2 1 7 7 C 1.37876 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00112 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.50310 * 60.07687 * 9 7 2 11 11 C 1.53116 * 109.50529 * 300.00246 * 9 7 2 12 12 C 1.53118 * 109.16357 * 182.39885 * 11 9 7 13 13 C 1.53037 * 109.27354 * 57.65805 * 12 11 9 14 14 N 1.46847 * 109.52113 * 300.81642 * 13 12 11 15 15 C 1.46906 * 110.99913 * 185.84215 * 14 13 12 16 16 C 1.53125 * 109.52269 * 56.04925 * 15 14 13 17 17 C 1.53033 * 109.27820 * 177.62469 * 16 15 14 18 18 N 1.46852 * 109.52166 * 300.81701 * 17 16 15 19 19 C 1.39675 * 111.00094 * 185.84056 * 18 17 16 20 20 C 1.38918 * 120.07039 * 0.29762 * 19 18 17 21 21 C 1.38104 * 119.92017 * 180.27814 * 20 19 18 22 22 C 1.38286 * 120.07376 * 359.44392 * 21 20 19 23 23 C 1.38289 * 120.15231 * 0.25962 * 22 21 20 24 24 C 1.38099 * 120.07103 * 0.02562 * 23 22 21 25 25 C 1.46849 * 111.19689 * 61.74622 * 18 17 16 26 26 C 1.53039 * 109.52088 * 298.25362 * 25 18 17 27 27 C 1.46849 * 111.20092 * 61.74778 * 14 13 12 28 28 H 0.97001 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.52469 * 62.49396 * 11 9 7 30 30 H 1.09004 * 109.57506 * 302.34397 * 11 9 7 31 31 H 1.08999 * 109.50427 * 297.71384 * 12 11 9 32 32 H 1.09003 * 109.53471 * 177.61398 * 12 11 9 33 33 H 1.08999 * 109.45941 * 180.80456 * 13 12 11 34 34 H 1.08999 * 109.45902 * 60.83137 * 13 12 11 35 35 H 1.08995 * 109.52476 * 295.92016 * 15 14 13 36 36 H 1.08999 * 109.50519 * 57.67848 * 16 15 14 37 37 H 1.09000 * 109.50163 * 297.56311 * 16 15 14 38 38 H 1.08998 * 109.46499 * 180.80303 * 17 16 15 39 39 H 1.09000 * 109.45524 * 60.82859 * 17 16 15 40 40 H 1.07998 * 120.03882 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.96506 * 179.72934 * 21 20 19 42 42 H 1.08005 * 119.92310 * 180.27752 * 22 21 20 43 43 H 1.07997 * 119.96283 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.03458 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.46711 * 58.26953 * 25 18 17 46 46 H 1.09001 * 109.46021 * 178.24617 * 25 18 17 47 47 H 1.08997 * 109.50758 * 299.23946 * 26 25 18 48 48 H 1.09005 * 109.50263 * 179.12080 * 26 25 18 49 49 H 1.09000 * 109.46113 * 58.26706 * 27 14 13 50 50 H 1.08996 * 109.46400 * 178.23787 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5579 -0.8908 11 6 0.3709 -2.5814 1.2497 12 6 -0.3448 -3.9348 1.2724 13 6 0.6954 -5.0569 1.2399 14 7 1.5111 -4.9347 0.0250 15 6 2.4286 -6.0741 -0.1098 16 6 1.6292 -7.3799 -0.0900 17 6 2.5834 -8.5595 -0.2902 18 7 3.2832 -8.4125 -1.5728 19 6 4.0641 -9.5372 -1.8489 20 6 4.0927 -10.6009 -0.9558 21 6 4.8704 -11.7090 -1.2291 22 6 5.6109 -11.7653 -2.3956 23 6 5.5798 -10.7107 -3.2897 24 6 4.8089 -9.5972 -3.0198 25 6 4.0952 -7.1892 -1.5975 26 6 3.1861 -5.9686 -1.4364 27 6 2.2449 -3.6629 0.0037 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3670 -1.7794 1.2291 30 1 0.9915 -2.4824 2.1403 31 1 -0.9959 -4.0167 0.4021 32 1 -0.9404 -4.0169 2.1816 33 1 0.1886 -6.0219 1.2415 34 1 1.3374 -4.9824 2.1175 35 1 3.1392 -6.0694 0.7167 36 1 0.8922 -7.3677 -0.8930 37 1 1.1215 -7.4813 0.8692 38 1 2.0156 -9.4899 -0.2909 39 1 3.3116 -8.5791 0.5207 40 1 3.5114 -10.5592 -0.0466 41 1 4.8967 -12.5345 -0.5331 42 1 6.2148 -12.6349 -2.6089 43 1 6.1591 -10.7581 -4.1999 44 1 4.7854 -8.7738 -3.7183 45 1 4.8162 -7.2153 -0.7806 46 1 4.6252 -7.1242 -2.5477 47 1 2.4736 -5.9341 -2.2605 48 1 3.7907 -5.0616 -1.4391 49 1 2.8797 -3.5950 0.8872 50 1 2.8636 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258514442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:23 Heat of formation + Delta-G solvation = 31.372885 kcal Electronic energy + Delta-G solvation = -26530.860705 eV Core-core repulsion = 23136.164650 eV Total energy + Delta-G solvation = -3394.696055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55100 -38.82139 -37.21934 -34.39067 -32.60805 -31.81538 -30.78117 -30.62821 -29.65931 -28.37717 -25.15057 -24.51084 -23.86548 -22.45307 -21.92443 -21.02017 -20.83468 -19.51790 -18.60306 -17.89370 -16.44129 -15.97641 -15.59270 -15.38550 -14.94614 -14.63046 -14.40011 -14.11781 -14.06218 -13.88631 -13.65241 -13.16765 -13.09090 -12.76048 -12.53028 -12.45298 -12.26794 -12.25589 -11.63203 -11.58694 -11.30767 -11.15053 -11.12623 -10.96237 -10.77049 -10.64547 -10.45115 -10.27015 -9.95634 -9.82285 -9.79123 -9.41427 -9.12183 -8.98416 -8.66135 -8.29209 -7.95012 -7.63711 -5.96383 -4.02481 1.21355 1.23150 3.30043 3.38226 3.41610 3.45298 3.75435 4.30249 4.48887 4.61093 4.74604 4.80410 4.85464 4.96139 5.11008 5.16281 5.23883 5.25442 5.33663 5.38833 5.48493 5.49824 5.53294 5.66096 5.68098 5.76906 5.79691 5.84410 5.91496 6.04686 6.11754 6.19210 6.24732 6.26932 6.33406 6.37767 6.38244 6.51118 6.54179 6.63906 6.74222 6.78148 6.90559 7.00615 7.18687 7.23951 7.42750 7.69602 7.76933 7.85706 8.10510 8.19427 8.49816 9.01887 9.61820 11.09539 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.002671 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.645880 B =10478.676475 C =11325.224776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.060 3.940 14 N -0.532 5.532 15 C 0.085 3.915 16 C -0.113 4.113 17 C 0.055 3.945 18 N -0.487 5.487 19 C 0.119 3.881 20 C -0.176 4.176 21 C -0.094 4.094 22 C -0.155 4.155 23 C -0.095 4.095 24 C -0.144 4.144 25 C 0.063 3.937 26 C -0.113 4.113 27 C 0.066 3.934 28 H 0.259 0.741 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.029 0.971 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.041 0.959 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.016 0.984 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 -21.448 -1.681 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.024 4.024 16 C -0.151 4.151 17 C -0.072 4.072 18 N -0.202 5.202 19 C 0.021 3.979 20 C -0.197 4.197 21 C -0.113 4.113 22 C -0.174 4.174 23 C -0.114 4.114 24 C -0.164 4.164 25 C -0.062 4.062 26 C -0.151 4.151 27 C -0.061 4.061 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.034 0.966 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.769 -21.173 -2.417 22.360 hybrid contribution 1.497 0.831 1.323 2.164 sum 8.266 -20.342 -1.094 21.985 Atomic orbital electron populations 1.69898 1.05822 1.26169 1.50796 1.24933 0.94817 0.98924 0.95188 0.86592 0.80129 0.84051 0.77536 1.19886 1.21033 1.21132 1.21185 0.92808 0.90705 1.50504 0.92882 1.18658 0.92611 0.90278 0.94814 0.94779 1.21653 1.00039 0.94758 0.98440 1.21671 0.97175 0.96494 1.00132 1.22080 0.95653 0.98873 0.90132 1.62044 1.23784 1.01948 1.37839 1.21586 0.93317 0.91287 0.96227 1.21749 0.98066 0.92493 1.02752 1.22281 0.96776 0.99767 0.88406 1.59002 1.27293 1.01675 1.32196 1.19064 0.92425 0.92100 0.94325 1.21337 1.02937 0.95681 0.99699 1.20990 0.95945 0.97414 0.96964 1.21038 1.01670 0.99192 0.95461 1.21009 0.98102 0.93248 0.99048 1.20833 0.99317 0.99594 0.96650 1.22258 0.94311 0.88009 1.01665 1.21727 0.98657 0.96153 0.98516 1.22352 0.96521 0.88501 0.98704 0.93136 0.89149 0.95303 0.92089 0.93650 0.92045 0.96180 0.95323 0.89938 0.91049 0.90030 0.93925 0.85641 0.86287 0.86435 0.86058 0.85709 0.94102 0.89952 0.89850 0.90480 0.96595 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.35 55.43 0.63 -24.71 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.06 1.37 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.76 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.06 1.05 5.14 -3.83 -0.02 1.03 16 14 N -0.53 -9.59 4.53 -226.54 -1.03 -10.62 16 15 C 0.08 1.25 2.01 -67.58 -0.14 1.11 16 16 C -0.11 -1.41 4.94 -26.65 -0.13 -1.54 16 17 C 0.05 0.60 4.15 -3.83 -0.02 0.59 16 18 N -0.49 -5.74 4.70 -171.15 -0.80 -6.55 16 19 C 0.12 1.34 5.64 -83.79 -0.47 0.87 16 20 C -0.18 -1.79 8.82 -39.38 -0.35 -2.14 16 21 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.15 -1.35 10.04 -39.54 -0.40 -1.74 16 23 C -0.10 -0.87 10.04 -39.61 -0.40 -1.26 16 24 C -0.14 -1.50 9.16 -39.39 -0.36 -1.86 16 25 C 0.06 0.74 5.26 -3.83 -0.02 0.72 16 26 C -0.11 -1.55 5.08 -26.65 -0.14 -1.68 16 27 C 0.07 1.38 4.44 -3.83 -0.02 1.36 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.92 5.96 -51.93 -0.31 0.61 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 38 H 0.08 0.81 6.96 -51.93 -0.36 0.45 16 39 H 0.04 0.46 7.75 -51.93 -0.40 0.05 16 40 H 0.13 1.14 5.81 -52.49 -0.30 0.83 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.21 7.15 -52.48 -0.38 0.83 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.88 6.70 -51.93 -0.35 0.53 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.08 1.11 6.43 -51.93 -0.33 0.77 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 1.28 6.07 -51.93 -0.32 0.97 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -28.62 370.46 -12.82 -41.44 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.44 Total: 1.14 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.74 Total: -22.51 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -1.20 Total: -41.87 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.62 -12.82 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258514442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.814 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds