Wall clock time and date at job start Tue Mar 31 2020 11:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48500 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47466 * 300.00073 * 3 2 1 6 6 H 1.48500 * 109.46959 * 60.00261 * 3 2 1 7 7 C 1.37881 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99759 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50948 * 300.08173 * 9 7 2 11 11 C 1.53129 * 109.53784 * 60.13943 * 9 7 2 12 12 C 1.53123 * 109.15931 * 177.57396 * 11 9 7 13 13 C 1.53039 * 109.31189 * 302.40768 * 12 11 9 14 14 N 1.46842 * 109.52266 * 59.15550 * 13 12 11 15 15 C 1.46910 * 110.99703 * 174.16402 * 14 13 12 16 16 C 1.53114 * 109.52233 * 175.73141 * 15 14 13 17 17 C 1.53036 * 109.27703 * 182.44035 * 16 15 14 18 18 N 1.46838 * 109.52408 * 59.18113 * 17 16 15 19 19 C 1.39681 * 111.00273 * 174.16252 * 18 17 16 20 20 C 1.38909 * 120.07826 * 123.92614 * 19 18 17 21 21 C 1.38098 * 119.92520 * 179.76679 * 20 19 18 22 22 C 1.38289 * 120.07447 * 0.51616 * 21 20 19 23 23 C 1.38291 * 120.14908 * 359.74174 * 22 21 20 24 24 C 1.38104 * 120.07298 * 359.97438 * 23 22 21 25 25 C 1.46849 * 111.19621 * 298.25402 * 18 17 16 26 26 C 1.53035 * 109.52304 * 61.74744 * 25 18 17 27 27 C 1.46849 * 111.20050 * 298.25785 * 14 13 12 28 28 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.49266 * 57.69087 * 11 9 7 30 30 H 1.08995 * 109.55725 * 297.49834 * 11 9 7 31 31 H 1.09002 * 109.50371 * 182.44317 * 12 11 9 32 32 H 1.09003 * 109.50070 * 62.36477 * 12 11 9 33 33 H 1.08995 * 109.46501 * 179.17754 * 13 12 11 34 34 H 1.09002 * 109.45552 * 299.15457 * 13 12 11 35 35 H 1.09001 * 109.51987 * 295.92249 * 15 14 13 36 36 H 1.09000 * 109.50223 * 302.38167 * 16 15 14 37 37 H 1.09003 * 109.50408 * 62.49800 * 16 15 14 38 38 H 1.09001 * 109.46178 * 299.15596 * 17 16 15 39 39 H 1.09007 * 109.46243 * 179.19879 * 17 16 15 40 40 H 1.08001 * 120.03644 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.96864 * 180.25516 * 21 20 19 42 42 H 1.07994 * 119.92612 * 179.71724 * 22 21 20 43 43 H 1.07994 * 119.95935 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.03398 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.46355 * 301.72883 * 25 18 17 46 46 H 1.09002 * 109.46043 * 181.76124 * 25 18 17 47 47 H 1.08996 * 109.50724 * 180.87895 * 26 25 18 48 48 H 1.09004 * 109.53684 * 60.77652 * 26 25 18 49 49 H 1.09001 * 109.46071 * 181.75754 * 27 14 13 50 50 H 1.08995 * 109.46417 * 301.72694 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6234 -2.5571 0.8887 11 6 0.3722 -2.5831 -1.2517 12 6 -0.3426 -3.9370 -1.2739 13 6 0.6974 -5.0591 -1.2375 14 7 1.5111 -4.9348 -0.0215 15 6 2.4283 -6.0740 0.1169 16 6 3.3319 -5.8584 1.3340 17 6 4.3253 -7.0180 1.4375 18 7 5.1319 -7.0840 0.2122 19 6 6.1370 -8.0472 0.3258 20 6 6.2287 -9.0712 -0.6083 21 6 7.2266 -10.0191 -0.4957 22 6 8.1276 -9.9559 0.5515 23 6 8.0359 -8.9409 1.4863 24 6 7.0439 -7.9863 1.3763 25 6 4.2905 -7.3377 -0.9643 26 6 3.2962 -6.1877 -1.1396 27 6 2.2448 -3.6629 -0.0012 28 1 -0.4850 0.8401 -0.0004 29 1 0.9951 -2.4855 -2.1409 30 1 -0.3662 -1.7815 -1.2334 31 1 -0.9362 -4.0203 -2.1843 32 1 -0.9957 -4.0179 -0.4049 33 1 0.1907 -6.0241 -1.2384 34 1 1.3411 -4.9861 -2.1141 35 1 1.8534 -6.9909 0.2466 36 1 3.8770 -4.9213 1.2212 37 1 2.7228 -5.8194 2.2371 38 1 3.7799 -7.9532 1.5642 39 1 4.9796 -6.8604 2.2950 40 1 5.5229 -9.1236 -1.4241 41 1 7.3011 -10.8132 -1.2240 42 1 8.9042 -10.7011 0.6398 43 1 8.7408 -8.8947 2.3031 44 1 6.9726 -7.1942 2.1068 45 1 3.7453 -8.2714 -0.8264 46 1 4.9196 -7.4122 -1.8514 47 1 2.6615 -6.3838 -2.0037 48 1 3.8402 -5.2554 -1.2917 49 1 2.8620 -3.6139 0.8959 50 1 2.8812 -3.5966 -0.8836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258514444.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:25 Heat of formation + Delta-G solvation = 33.178507 kcal Electronic energy + Delta-G solvation = -26788.937692 eV Core-core repulsion = 23394.319935 eV Total energy + Delta-G solvation = -3394.617757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59424 -38.95426 -37.13555 -34.37525 -32.59872 -31.74150 -30.64014 -30.53643 -29.76072 -28.27697 -25.03612 -24.51408 -24.01490 -22.61428 -21.87350 -21.15073 -20.93854 -19.61237 -18.09619 -17.85880 -16.44842 -15.95186 -15.65088 -15.32529 -14.93053 -14.53978 -14.31632 -14.20871 -13.97386 -13.73782 -13.57722 -13.46614 -13.20672 -12.77582 -12.62631 -12.45579 -12.17658 -12.01688 -11.67759 -11.60246 -11.26127 -11.17946 -11.02382 -10.91662 -10.84238 -10.61470 -10.47767 -10.20044 -10.02810 -9.78765 -9.76754 -9.41431 -9.10420 -8.96358 -8.64548 -8.27993 -7.93212 -7.56660 -5.95042 -4.00764 1.23241 1.24880 3.31448 3.39627 3.43638 3.47655 3.76933 4.36131 4.51442 4.62744 4.77000 4.82704 4.91516 4.97520 5.07173 5.14437 5.24723 5.27307 5.35156 5.40431 5.46089 5.51790 5.56438 5.67470 5.71526 5.76917 5.77876 5.85050 5.94607 6.04477 6.08292 6.19137 6.25612 6.28767 6.31493 6.39429 6.47792 6.50069 6.57221 6.64640 6.74868 6.80859 6.93460 7.03498 7.20362 7.25029 7.43691 7.70584 7.78666 7.86329 8.11830 8.20682 8.51748 9.03868 9.63556 11.10997 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.002989 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.568274 B = 9366.131067 C =10267.563903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.531 5.531 15 C 0.086 3.914 16 C -0.117 4.117 17 C 0.064 3.936 18 N -0.488 5.488 19 C 0.120 3.880 20 C -0.176 4.176 21 C -0.094 4.094 22 C -0.155 4.155 23 C -0.095 4.095 24 C -0.144 4.144 25 C 0.059 3.941 26 C -0.153 4.153 27 C 0.063 3.937 28 H 0.258 0.742 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.043 0.957 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -19.724 0.027 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.254 5.254 15 C -0.023 4.023 16 C -0.155 4.155 17 C -0.062 4.062 18 N -0.203 5.203 19 C 0.022 3.978 20 C -0.197 4.197 21 C -0.113 4.113 22 C -0.174 4.174 23 C -0.114 4.114 24 C -0.164 4.164 25 C -0.068 4.068 26 C -0.193 4.193 27 C -0.064 4.064 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.691 -19.061 0.377 21.387 hybrid contribution 0.752 0.280 -0.811 1.141 sum 10.443 -18.781 -0.434 21.493 Atomic orbital electron populations 1.69906 1.05827 1.26134 1.50913 1.24934 0.94810 0.98923 0.95210 0.86596 0.80193 0.84054 0.77505 1.19837 1.21149 1.21069 1.21194 0.92845 0.90693 1.50350 0.92836 1.18668 0.92636 0.90420 0.94710 0.94928 1.21651 1.00014 0.94664 0.98525 1.21679 0.97202 0.96559 1.00089 1.22019 0.95480 0.98510 0.90546 1.62259 1.23283 1.02259 1.37582 1.21729 0.92092 0.95033 0.93485 1.21818 0.96382 0.98557 0.98751 1.22243 0.94934 0.98581 0.90432 1.58970 1.12904 1.43427 1.04985 1.19055 0.94269 0.89344 0.95152 1.21341 1.01401 0.95086 1.01856 1.20987 0.94543 0.98135 0.97651 1.21035 1.00499 0.99755 0.96083 1.21009 0.97466 0.94302 0.98627 1.20838 0.96037 1.00417 0.99096 1.22199 0.94493 0.97705 0.92405 1.22362 0.97729 0.99192 0.99996 1.22399 0.96555 0.88359 0.99044 0.93174 0.95264 0.89209 0.93661 0.92183 0.92700 0.95553 0.91119 0.89857 0.90158 0.94009 0.90008 0.85671 0.86300 0.86438 0.86057 0.85707 0.93857 0.90374 0.91051 0.90386 0.91715 0.96144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.36 55.43 0.63 -24.79 16 2 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.11 -2.61 5.03 -26.60 -0.13 -2.74 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.06 1.07 4.77 -3.84 -0.02 1.05 16 14 N -0.53 -9.47 4.71 -226.54 -1.07 -10.54 16 15 C 0.09 1.24 2.44 -67.59 -0.16 1.07 16 16 C -0.12 -1.60 4.95 -26.65 -0.13 -1.73 16 17 C 0.06 0.74 5.26 -3.84 -0.02 0.72 16 18 N -0.49 -6.02 4.70 -171.15 -0.80 -6.83 16 19 C 0.12 1.41 5.64 -83.78 -0.47 0.93 16 20 C -0.18 -1.86 8.82 -39.38 -0.35 -2.21 16 21 C -0.09 -0.88 10.04 -39.61 -0.40 -1.28 16 22 C -0.15 -1.39 10.04 -39.54 -0.40 -1.79 16 23 C -0.10 -0.90 10.04 -39.61 -0.40 -1.29 16 24 C -0.14 -1.55 9.16 -39.38 -0.36 -1.91 16 25 C 0.06 0.69 4.15 -3.83 -0.02 0.67 16 26 C -0.15 -2.06 4.62 -26.65 -0.12 -2.19 16 27 C 0.06 1.31 3.89 -3.83 -0.01 1.30 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.03 0.45 6.65 -51.93 -0.35 0.11 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.29 6.05 -51.93 -0.31 0.98 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.87 6.71 -51.93 -0.35 0.53 16 40 H 0.13 1.19 5.81 -52.49 -0.30 0.89 16 41 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 1.26 7.15 -52.49 -0.38 0.89 16 45 H 0.04 0.47 7.72 -51.93 -0.40 0.06 16 46 H 0.08 0.86 6.99 -51.93 -0.36 0.50 16 47 H 0.07 0.93 6.64 -51.93 -0.34 0.58 16 48 H 0.08 1.23 6.65 -51.93 -0.35 0.88 16 49 H 0.06 1.34 5.79 -51.93 -0.30 1.04 16 50 H 0.02 0.44 6.77 -51.93 -0.35 0.09 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -28.63 367.14 -12.79 -41.42 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.31 Total: 2.24 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -3.76 Total: -23.39 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -1.24 Total: -42.15 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.63 -12.79 -41.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258514444.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.602 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds