Wall clock time and date at job start Tue Mar 31 2020 10:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 113.99649 * 2 1
4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1
5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2
6 6 C 1.42899 * 113.99629 * 180.02562 * 5 4 3
7 7 N 1.46903 * 109.47486 * 80.00107 * 6 5 4
8 8 C 1.46952 * 110.99550 * 31.11713 * 7 6 5
9 9 C 1.53095 * 109.35473 * 183.03717 * 8 7 6
10 10 H 1.09002 * 110.02930 * 180.93628 * 9 8 7
11 11 C 1.53130 * 109.29538 * 60.52740 * 9 8 7
12 12 O 1.43013 * 109.22949 * 297.82849 * 11 9 8
13 13 C 1.43007 * 113.79013 * 301.46803 * 12 11 9
14 14 C 1.53136 * 109.25471 * 58.51946 * 13 12 11
15 15 H 1.08995 * 110.03596 * 182.62191 * 14 13 12
16 16 C 1.46944 * 111.00171 * 154.99579 * 7 6 5
17 17 N 1.47118 * 109.16358 * 301.25600 * 9 8 7
18 18 C 1.46894 * 111.00223 * 296.57933 * 17 9 8
19 19 C 1.53000 * 109.47149 * 313.24108 * 18 17 9
20 20 C 1.50703 * 109.47156 * 180.02562 * 19 18 17
21 21 H 1.08002 * 120.00013 * 0.02562 * 20 19 18
22 22 C 1.37872 * 120.00135 * 180.02562 * 20 19 18
23 23 N 1.31515 * 120.00005 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00295 * 180.02562 * 22 20 19
25 25 H 1.48508 * 109.47163 * 359.97438 * 24 22 20
26 26 H 1.48496 * 109.47677 * 119.99880 * 24 22 20
27 27 H 1.48497 * 109.47282 * 240.00297 * 24 22 20
28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3
29 29 H 1.08992 * 109.47069 * 60.00902 * 1 2 3
30 30 H 1.09008 * 109.46743 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47445 * 59.99875 * 3 2 1
32 32 H 1.09002 * 109.47167 * 299.99793 * 3 2 1
33 33 H 1.09002 * 109.47398 * 184.99964 * 4 3 2
34 34 H 1.09001 * 109.47194 * 305.00145 * 4 3 2
35 35 H 1.09003 * 109.47195 * 200.00428 * 6 5 4
36 36 H 1.09005 * 109.47724 * 319.99834 * 6 5 4
37 37 H 1.08996 * 109.49390 * 303.00595 * 8 7 6
38 38 H 1.09004 * 109.49029 * 63.07353 * 8 7 6
39 39 H 1.09001 * 109.51285 * 57.75597 * 11 9 8
40 40 H 1.08997 * 109.51187 * 177.85138 * 11 9 8
41 41 H 1.09001 * 109.51279 * 298.58218 * 13 12 11
42 42 H 1.09002 * 109.50612 * 178.44987 * 13 12 11
43 43 H 1.08997 * 109.49893 * 296.91130 * 16 7 6
44 44 H 1.09006 * 109.49258 * 56.99577 * 16 7 6
45 45 H 1.08990 * 109.47369 * 73.24391 * 18 17 9
46 46 H 1.09007 * 109.47047 * 193.24192 * 18 17 9
47 47 H 1.09003 * 109.47041 * 299.99819 * 19 18 17
48 48 H 1.08997 * 109.46994 * 60.00282 * 19 18 17
49 49 H 0.96998 * 120.00324 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 8 3.9658 0.5794 -1.2201
6 6 5.3821 0.4190 -1.3216
7 7 5.7961 -0.7687 -0.5625
8 6 4.7399 -1.7905 -0.5663
9 6 5.1789 -2.9771 0.2957
10 1 4.4097 -3.7495 0.2872
11 6 5.4124 -2.5001 1.7320
12 8 6.4681 -1.5354 1.7421
13 6 7.7048 -2.0281 1.2195
14 6 7.4914 -2.5015 -0.2211
15 1 8.4156 -2.9226 -0.6166
16 6 7.0566 -1.3144 -1.0846
17 7 6.4347 -3.5250 -0.2402
18 6 6.2411 -4.0566 -1.5958
19 6 4.9818 -4.9250 -1.6280
20 6 4.7835 -5.4710 -3.0186
21 1 5.4857 -5.2236 -3.8010
22 6 3.7058 -6.2862 -3.2919
23 7 2.8510 -6.5878 -2.3390
24 14 3.4603 -6.9635 -5.0154
25 1 4.5526 -6.4796 -5.8977
26 1 3.4797 -8.4477 -4.9716
27 1 2.1534 -6.5010 -5.5476
28 1 -0.3634 0.5137 0.8899
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3633 -1.0278 0.0005
31 1 1.6885 1.8464 0.8900
32 1 1.6885 1.8464 -0.8900
33 1 3.9783 2.1768 0.0902
34 1 3.8508 0.5687 0.8427
35 1 5.6598 0.2962 -2.3684
36 1 5.8777 1.3007 -0.9153
37 1 3.8217 -1.3660 -0.1605
38 1 4.5643 -2.1283 -1.5877
39 1 4.4999 -2.0453 2.1175
40 1 5.6882 -3.3493 2.3573
41 1 8.0511 -2.8625 1.8294
42 1 8.4491 -1.2319 1.2345
43 1 6.9114 -1.6462 -2.1126
44 1 7.8263 -0.5429 -1.0563
45 1 6.1306 -3.2303 -2.2978
46 1 7.1051 -4.6589 -1.8767
47 1 5.0924 -5.7515 -0.9259
48 1 4.1179 -4.3228 -1.3471
49 1 2.0925 -7.1610 -2.5314
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001277942980.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:58
Heat of formation + Delta-G solvation = -99.789397 kcal
Electronic energy + Delta-G solvation = -29162.009525 eV
Core-core repulsion = 25318.483833 eV
Total energy + Delta-G solvation = -3843.525692 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.204 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.61259 -38.49168 -37.33685 -36.00332 -34.34000 -32.81234 -32.32860 -30.40899
-29.74332 -26.98403 -26.34512 -26.24122 -25.46191 -23.76884 -22.72239 -22.47656
-21.88933 -20.45263 -17.65956 -17.21508 -16.76813 -16.62522 -16.03793 -15.79456
-15.59590 -15.36121 -15.31048 -14.92122 -14.49785 -14.33071 -14.25583 -13.95172
-13.85275 -13.29570 -12.95753 -12.83538 -12.46584 -12.17067 -11.95431 -11.68230
-11.58189 -11.52326 -11.34772 -11.21536 -11.04614 -10.91832 -10.68379 -10.61274
-10.41755 -10.11182 -9.96658 -9.73136 -9.67025 -9.39769 -9.09050 -9.00333
-8.32782 -8.07919 -7.42466 -5.98773 -4.00725 3.31768 3.39104 3.42916
3.68059 3.77282 4.02512 4.35178 4.42008 4.54724 4.95085 5.13446
5.14509 5.19515 5.23930 5.30003 5.31464 5.34670 5.37617 5.40902
5.42945 5.44418 5.48963 5.61783 5.71579 5.72532 5.79153 5.79749
5.86277 5.95989 6.07662 6.10703 6.20901 6.33449 6.43351 6.49046
6.60559 6.89648 6.93852 7.14297 7.25225 7.49793 7.56654 7.59502
7.65582 7.78867 7.86565 8.05410 8.43959 9.05499 9.62875 11.12619
Molecular weight = 314.20amu
Principal moments of inertia in cm(-1)
A = 0.009902 B = 0.005186 C = 0.003954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2826.930712 B = 5398.369011 C = 7079.518101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.377 6.377
3 C 0.062 3.938
4 C 0.065 3.935
5 O -0.376 6.376
6 C 0.226 3.774
7 N -0.535 5.535
8 C 0.037 3.963
9 C 0.046 3.954
10 H 0.110 0.890
11 C 0.080 3.920
12 O -0.360 6.360
13 C 0.084 3.916
14 C 0.046 3.954
15 H 0.089 0.911
16 C 0.031 3.969
17 N -0.525 5.525
18 C 0.058 3.942
19 C 0.023 3.977
20 C -0.519 4.519
21 H 0.053 0.947
22 C 0.060 3.940
23 N -0.892 5.892
24 Si 0.890 3.110
25 H -0.274 1.274
26 H -0.284 1.284
27 H -0.284 1.284
28 H 0.037 0.963
29 H 0.039 0.961
30 H 0.088 0.912
31 H 0.060 0.940
32 H 0.053 0.947
33 H 0.060 0.940
34 H 0.070 0.930
35 H 0.060 0.940
36 H 0.064 0.936
37 H 0.090 0.910
38 H 0.044 0.956
39 H 0.088 0.912
40 H 0.047 0.953
41 H 0.048 0.952
42 H 0.085 0.915
43 H 0.039 0.961
44 H 0.071 0.929
45 H 0.023 0.977
46 H 0.061 0.939
47 H 0.023 0.977
48 H 0.022 0.978
49 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.068 16.917 7.750 18.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.296 6.296
3 C -0.014 4.014
4 C -0.012 4.012
5 O -0.292 6.292
6 C 0.061 3.939
7 N -0.266 5.266
8 C -0.091 4.091
9 C -0.063 4.063
10 H 0.128 0.872
11 C 0.003 3.997
12 O -0.278 6.278
13 C 0.006 3.994
14 C -0.063 4.063
15 H 0.107 0.893
16 C -0.099 4.099
17 N -0.249 5.249
18 C -0.069 4.069
19 C -0.014 4.014
20 C -0.558 4.558
21 H 0.071 0.929
22 C -0.142 4.142
23 N -0.531 5.531
24 Si 0.718 3.282
25 H -0.198 1.198
26 H -0.210 1.210
27 H -0.210 1.210
28 H 0.056 0.944
29 H 0.057 0.943
30 H 0.107 0.893
31 H 0.078 0.922
32 H 0.071 0.929
33 H 0.078 0.922
34 H 0.089 0.911
35 H 0.078 0.922
36 H 0.082 0.918
37 H 0.108 0.892
38 H 0.062 0.938
39 H 0.106 0.894
40 H 0.066 0.934
41 H 0.066 0.934
42 H 0.103 0.897
43 H 0.057 0.943
44 H 0.090 0.910
45 H 0.042 0.958
46 H 0.079 0.921
47 H 0.041 0.959
48 H 0.040 0.960
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 3.059 16.554 8.485 18.852
hybrid contribution -0.593 0.027 -2.459 2.530
sum 2.466 16.581 6.027 17.814
Atomic orbital electron populations
1.22741 0.81194 1.03120 0.99402 1.88029 1.19455 1.26824 1.95258
1.22567 0.92772 0.85771 1.00329 1.22540 0.92700 0.97243 0.88678
1.88030 1.21874 1.81594 1.37656 1.23224 0.80833 0.93543 0.96317
1.62539 1.03871 1.07124 1.53105 1.22488 0.94847 0.91775 1.00024
1.22598 0.93468 0.95576 0.94654 0.87242 1.22499 0.90746 0.91685
0.94769 1.87964 1.19090 1.37923 1.82796 1.22373 0.87102 0.98082
0.91865 1.22477 0.96567 0.90539 0.96757 0.89267 1.22595 0.92358
0.97710 0.97244 1.62767 1.05909 1.31243 1.24933 1.22391 1.01437
0.97272 0.85751 1.19220 0.90691 0.94417 0.97110 1.21178 1.09550
1.29578 0.95517 0.92911 1.24966 0.95962 0.96339 0.96908 1.69969
1.14052 1.36992 1.32098 0.86565 0.77995 0.78758 0.84846 1.19845
1.20975 1.21047 0.94439 0.94264 0.89324 0.92166 0.92878 0.92205
0.91128 0.92203 0.91785 0.89174 0.93783 0.89402 0.93438 0.93425
0.89681 0.94283 0.91026 0.95838 0.92074 0.95859 0.95958 0.93064
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 11.01 101.05 1.11 1.46 16
2 O -0.38 -5.42 10.67 -40.09 -0.43 -5.85 16
3 C 0.06 0.71 6.32 37.16 0.23 0.94 16
4 C 0.06 0.79 5.56 37.16 0.21 0.99 16
5 O -0.38 -5.67 8.86 -40.09 -0.36 -6.03 16
6 C 0.23 3.14 6.52 60.07 0.39 3.53 16
7 N -0.53 -8.22 3.30 -240.27 -0.79 -9.01 16
8 C 0.04 0.68 3.96 -3.75 -0.01 0.66 16
9 C 0.05 0.84 2.48 -67.48 -0.17 0.67 16
10 H 0.11 2.29 6.02 -51.93 -0.31 1.97 16
11 C 0.08 1.27 6.42 37.22 0.24 1.51 16
12 O -0.36 -5.59 9.25 -35.23 -0.33 -5.92 16
13 C 0.08 1.14 6.41 37.23 0.24 1.38 16
14 C 0.05 0.70 3.05 -67.47 -0.21 0.50 16
15 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
16 C 0.03 0.45 4.53 -3.75 -0.02 0.43 16
17 N -0.52 -9.71 4.84 -218.10 -1.06 -10.76 16
18 C 0.06 1.24 4.46 -3.83 -0.02 1.23 16
19 C 0.02 0.59 4.18 -27.88 -0.12 0.48 16
20 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16
21 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16
22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
23 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16
24 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16
25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16
28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16
34 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16
35 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16
36 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16
37 H 0.09 1.69 6.10 -51.93 -0.32 1.37 16
38 H 0.04 0.96 6.39 -51.93 -0.33 0.62 16
39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
43 H 0.04 0.64 6.29 -51.93 -0.33 0.32 16
44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
45 H 0.02 0.51 5.03 -51.93 -0.26 0.25 16
46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16
47 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16
48 H 0.02 0.61 5.74 -51.93 -0.30 0.31 16
49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 369.54 15.07 5.57 5.57
Total: -1.00 -32.07 369.54 -8.72 -40.79
By element:
Atomic # 1 Polarization: 8.74 SS G_CDS: -8.52 Total: 0.22 kcal
Atomic # 6 Polarization: -1.23 SS G_CDS: 1.47 Total: 0.25 kcal
Atomic # 7 Polarization: -44.86 SS G_CDS: -1.11 Total: -45.97 kcal
Atomic # 8 Polarization: -16.69 SS G_CDS: -1.11 Total: -17.80 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -32.07 -8.72 -40.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277942980.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.996 kcal
(2) G-P(sol) polarization free energy of solvation -32.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.789 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds