Wall clock time and date at job start Tue Mar 31 2020 10:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.42899 * 113.99629 * 180.02562 * 5 4 3 7 7 N 1.46903 * 109.47486 * 80.00107 * 6 5 4 8 8 C 1.46952 * 110.99550 * 31.11713 * 7 6 5 9 9 C 1.53095 * 109.35473 * 183.03717 * 8 7 6 10 10 H 1.09002 * 110.02930 * 180.93628 * 9 8 7 11 11 C 1.53130 * 109.29538 * 60.52740 * 9 8 7 12 12 O 1.43013 * 109.22949 * 297.82849 * 11 9 8 13 13 C 1.43007 * 113.79013 * 301.46803 * 12 11 9 14 14 C 1.53136 * 109.25471 * 58.51946 * 13 12 11 15 15 H 1.08995 * 110.03596 * 182.62191 * 14 13 12 16 16 C 1.46944 * 111.00171 * 154.99579 * 7 6 5 17 17 N 1.47118 * 109.16358 * 301.25600 * 9 8 7 18 18 C 1.46894 * 111.00223 * 296.57933 * 17 9 8 19 19 C 1.53000 * 109.47149 * 313.24108 * 18 17 9 20 20 C 1.50703 * 109.47156 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00013 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00135 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00005 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00295 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47163 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47677 * 119.99880 * 24 22 20 27 27 H 1.48497 * 109.47282 * 240.00297 * 24 22 20 28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 29 29 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 30 30 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 32 32 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 33 33 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 34 34 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 35 35 H 1.09003 * 109.47195 * 200.00428 * 6 5 4 36 36 H 1.09005 * 109.47724 * 319.99834 * 6 5 4 37 37 H 1.08996 * 109.49390 * 303.00595 * 8 7 6 38 38 H 1.09004 * 109.49029 * 63.07353 * 8 7 6 39 39 H 1.09001 * 109.51285 * 57.75597 * 11 9 8 40 40 H 1.08997 * 109.51187 * 177.85138 * 11 9 8 41 41 H 1.09001 * 109.51279 * 298.58218 * 13 12 11 42 42 H 1.09002 * 109.50612 * 178.44987 * 13 12 11 43 43 H 1.08997 * 109.49893 * 296.91130 * 16 7 6 44 44 H 1.09006 * 109.49258 * 56.99577 * 16 7 6 45 45 H 1.08990 * 109.47369 * 73.24391 * 18 17 9 46 46 H 1.09007 * 109.47047 * 193.24192 * 18 17 9 47 47 H 1.09003 * 109.47041 * 299.99819 * 19 18 17 48 48 H 1.08997 * 109.46994 * 60.00282 * 19 18 17 49 49 H 0.96998 * 120.00324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3821 0.4190 -1.3216 7 7 5.7961 -0.7687 -0.5625 8 6 4.7399 -1.7905 -0.5663 9 6 5.1789 -2.9771 0.2957 10 1 4.4097 -3.7495 0.2872 11 6 5.4124 -2.5001 1.7320 12 8 6.4681 -1.5354 1.7421 13 6 7.7048 -2.0281 1.2195 14 6 7.4914 -2.5015 -0.2211 15 1 8.4156 -2.9226 -0.6166 16 6 7.0566 -1.3144 -1.0846 17 7 6.4347 -3.5250 -0.2402 18 6 6.2411 -4.0566 -1.5958 19 6 4.9818 -4.9250 -1.6280 20 6 4.7835 -5.4710 -3.0186 21 1 5.4857 -5.2236 -3.8010 22 6 3.7058 -6.2862 -3.2919 23 7 2.8510 -6.5878 -2.3390 24 14 3.4603 -6.9635 -5.0154 25 1 4.5526 -6.4796 -5.8977 26 1 3.4797 -8.4477 -4.9716 27 1 2.1534 -6.5010 -5.5476 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9783 2.1768 0.0902 34 1 3.8508 0.5687 0.8427 35 1 5.6598 0.2962 -2.3684 36 1 5.8777 1.3007 -0.9153 37 1 3.8217 -1.3660 -0.1605 38 1 4.5643 -2.1283 -1.5877 39 1 4.4999 -2.0453 2.1175 40 1 5.6882 -3.3493 2.3573 41 1 8.0511 -2.8625 1.8294 42 1 8.4491 -1.2319 1.2345 43 1 6.9114 -1.6462 -2.1126 44 1 7.8263 -0.5429 -1.0563 45 1 6.1306 -3.2303 -2.2978 46 1 7.1051 -4.6589 -1.8767 47 1 5.0924 -5.7515 -0.9259 48 1 4.1179 -4.3228 -1.3471 49 1 2.0925 -7.1610 -2.5314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277942980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:58 Heat of formation + Delta-G solvation = -99.789397 kcal Electronic energy + Delta-G solvation = -29162.009525 eV Core-core repulsion = 25318.483833 eV Total energy + Delta-G solvation = -3843.525692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61259 -38.49168 -37.33685 -36.00332 -34.34000 -32.81234 -32.32860 -30.40899 -29.74332 -26.98403 -26.34512 -26.24122 -25.46191 -23.76884 -22.72239 -22.47656 -21.88933 -20.45263 -17.65956 -17.21508 -16.76813 -16.62522 -16.03793 -15.79456 -15.59590 -15.36121 -15.31048 -14.92122 -14.49785 -14.33071 -14.25583 -13.95172 -13.85275 -13.29570 -12.95753 -12.83538 -12.46584 -12.17067 -11.95431 -11.68230 -11.58189 -11.52326 -11.34772 -11.21536 -11.04614 -10.91832 -10.68379 -10.61274 -10.41755 -10.11182 -9.96658 -9.73136 -9.67025 -9.39769 -9.09050 -9.00333 -8.32782 -8.07919 -7.42466 -5.98773 -4.00725 3.31768 3.39104 3.42916 3.68059 3.77282 4.02512 4.35178 4.42008 4.54724 4.95085 5.13446 5.14509 5.19515 5.23930 5.30003 5.31464 5.34670 5.37617 5.40902 5.42945 5.44418 5.48963 5.61783 5.71579 5.72532 5.79153 5.79749 5.86277 5.95989 6.07662 6.10703 6.20901 6.33449 6.43351 6.49046 6.60559 6.89648 6.93852 7.14297 7.25225 7.49793 7.56654 7.59502 7.65582 7.78867 7.86565 8.05410 8.43959 9.05499 9.62875 11.12619 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.005186 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.930712 B = 5398.369011 C = 7079.518101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.062 3.938 4 C 0.065 3.935 5 O -0.376 6.376 6 C 0.226 3.774 7 N -0.535 5.535 8 C 0.037 3.963 9 C 0.046 3.954 10 H 0.110 0.890 11 C 0.080 3.920 12 O -0.360 6.360 13 C 0.084 3.916 14 C 0.046 3.954 15 H 0.089 0.911 16 C 0.031 3.969 17 N -0.525 5.525 18 C 0.058 3.942 19 C 0.023 3.977 20 C -0.519 4.519 21 H 0.053 0.947 22 C 0.060 3.940 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.023 0.977 46 H 0.061 0.939 47 H 0.023 0.977 48 H 0.022 0.978 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 16.917 7.750 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.292 6.292 6 C 0.061 3.939 7 N -0.266 5.266 8 C -0.091 4.091 9 C -0.063 4.063 10 H 0.128 0.872 11 C 0.003 3.997 12 O -0.278 6.278 13 C 0.006 3.994 14 C -0.063 4.063 15 H 0.107 0.893 16 C -0.099 4.099 17 N -0.249 5.249 18 C -0.069 4.069 19 C -0.014 4.014 20 C -0.558 4.558 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.531 5.531 24 Si 0.718 3.282 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.041 0.959 48 H 0.040 0.960 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.059 16.554 8.485 18.852 hybrid contribution -0.593 0.027 -2.459 2.530 sum 2.466 16.581 6.027 17.814 Atomic orbital electron populations 1.22741 0.81194 1.03120 0.99402 1.88029 1.19455 1.26824 1.95258 1.22567 0.92772 0.85771 1.00329 1.22540 0.92700 0.97243 0.88678 1.88030 1.21874 1.81594 1.37656 1.23224 0.80833 0.93543 0.96317 1.62539 1.03871 1.07124 1.53105 1.22488 0.94847 0.91775 1.00024 1.22598 0.93468 0.95576 0.94654 0.87242 1.22499 0.90746 0.91685 0.94769 1.87964 1.19090 1.37923 1.82796 1.22373 0.87102 0.98082 0.91865 1.22477 0.96567 0.90539 0.96757 0.89267 1.22595 0.92358 0.97710 0.97244 1.62767 1.05909 1.31243 1.24933 1.22391 1.01437 0.97272 0.85751 1.19220 0.90691 0.94417 0.97110 1.21178 1.09550 1.29578 0.95517 0.92911 1.24966 0.95962 0.96339 0.96908 1.69969 1.14052 1.36992 1.32098 0.86565 0.77995 0.78758 0.84846 1.19845 1.20975 1.21047 0.94439 0.94264 0.89324 0.92166 0.92878 0.92205 0.91128 0.92203 0.91785 0.89174 0.93783 0.89402 0.93438 0.93425 0.89681 0.94283 0.91026 0.95838 0.92074 0.95859 0.95958 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.42 10.67 -40.09 -0.43 -5.85 16 3 C 0.06 0.71 6.32 37.16 0.23 0.94 16 4 C 0.06 0.79 5.56 37.16 0.21 0.99 16 5 O -0.38 -5.67 8.86 -40.09 -0.36 -6.03 16 6 C 0.23 3.14 6.52 60.07 0.39 3.53 16 7 N -0.53 -8.22 3.30 -240.27 -0.79 -9.01 16 8 C 0.04 0.68 3.96 -3.75 -0.01 0.66 16 9 C 0.05 0.84 2.48 -67.48 -0.17 0.67 16 10 H 0.11 2.29 6.02 -51.93 -0.31 1.97 16 11 C 0.08 1.27 6.42 37.22 0.24 1.51 16 12 O -0.36 -5.59 9.25 -35.23 -0.33 -5.92 16 13 C 0.08 1.14 6.41 37.23 0.24 1.38 16 14 C 0.05 0.70 3.05 -67.47 -0.21 0.50 16 15 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.03 0.45 4.53 -3.75 -0.02 0.43 16 17 N -0.52 -9.71 4.84 -218.10 -1.06 -10.76 16 18 C 0.06 1.24 4.46 -3.83 -0.02 1.23 16 19 C 0.02 0.59 4.18 -27.88 -0.12 0.48 16 20 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 21 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 24 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16 35 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 36 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.09 1.69 6.10 -51.93 -0.32 1.37 16 38 H 0.04 0.96 6.39 -51.93 -0.33 0.62 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.64 6.29 -51.93 -0.33 0.32 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.02 0.51 5.03 -51.93 -0.26 0.25 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.61 5.74 -51.93 -0.30 0.31 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -32.07 369.54 -8.72 -40.79 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.52 Total: 0.22 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 1.47 Total: 0.25 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -1.11 Total: -45.97 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.11 Total: -17.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.07 -8.72 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277942980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.996 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds