Wall clock time and date at job start Tue Mar 31 2020 10:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.42899 * 113.99629 * 180.02562 * 5 4 3 7 7 N 1.46903 * 109.47486 * 80.00107 * 6 5 4 8 8 C 1.46952 * 110.99550 * 31.11713 * 7 6 5 9 9 C 1.53095 * 109.35473 * 183.03717 * 8 7 6 10 10 H 1.09002 * 110.02930 * 180.93628 * 9 8 7 11 11 C 1.53130 * 109.29538 * 60.52740 * 9 8 7 12 12 O 1.43013 * 109.22949 * 297.82849 * 11 9 8 13 13 C 1.43007 * 113.79013 * 301.46803 * 12 11 9 14 14 C 1.53136 * 109.25471 * 58.51946 * 13 12 11 15 15 H 1.08995 * 110.03596 * 182.62191 * 14 13 12 16 16 C 1.46944 * 111.00171 * 154.99579 * 7 6 5 17 17 N 1.47118 * 109.16358 * 301.25600 * 9 8 7 18 18 C 1.46894 * 111.00223 * 296.57933 * 17 9 8 19 19 C 1.53000 * 109.47149 * 313.24108 * 18 17 9 20 20 C 1.50703 * 109.47156 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00013 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00135 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00005 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00295 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47163 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47677 * 119.99880 * 24 22 20 27 27 H 1.48497 * 109.47282 * 240.00297 * 24 22 20 28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 29 29 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 30 30 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 32 32 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 33 33 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 34 34 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 35 35 H 1.09003 * 109.47195 * 200.00428 * 6 5 4 36 36 H 1.09005 * 109.47724 * 319.99834 * 6 5 4 37 37 H 1.08996 * 109.49390 * 303.00595 * 8 7 6 38 38 H 1.09004 * 109.49029 * 63.07353 * 8 7 6 39 39 H 1.09001 * 109.51285 * 57.75597 * 11 9 8 40 40 H 1.08997 * 109.51187 * 177.85138 * 11 9 8 41 41 H 1.09001 * 109.51279 * 298.58218 * 13 12 11 42 42 H 1.09002 * 109.50612 * 178.44987 * 13 12 11 43 43 H 1.08997 * 109.49893 * 296.91130 * 16 7 6 44 44 H 1.09006 * 109.49258 * 56.99577 * 16 7 6 45 45 H 1.08990 * 109.47369 * 73.24391 * 18 17 9 46 46 H 1.09007 * 109.47047 * 193.24192 * 18 17 9 47 47 H 1.09003 * 109.47041 * 299.99819 * 19 18 17 48 48 H 1.08997 * 109.46994 * 60.00282 * 19 18 17 49 49 H 0.96998 * 120.00324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3821 0.4190 -1.3216 7 7 5.7961 -0.7687 -0.5625 8 6 4.7399 -1.7905 -0.5663 9 6 5.1789 -2.9771 0.2957 10 1 4.4097 -3.7495 0.2872 11 6 5.4124 -2.5001 1.7320 12 8 6.4681 -1.5354 1.7421 13 6 7.7048 -2.0281 1.2195 14 6 7.4914 -2.5015 -0.2211 15 1 8.4156 -2.9226 -0.6166 16 6 7.0566 -1.3144 -1.0846 17 7 6.4347 -3.5250 -0.2402 18 6 6.2411 -4.0566 -1.5958 19 6 4.9818 -4.9250 -1.6280 20 6 4.7835 -5.4710 -3.0186 21 1 5.4857 -5.2236 -3.8010 22 6 3.7058 -6.2862 -3.2919 23 7 2.8510 -6.5878 -2.3390 24 14 3.4603 -6.9635 -5.0154 25 1 4.5526 -6.4796 -5.8977 26 1 3.4797 -8.4477 -4.9716 27 1 2.1534 -6.5010 -5.5476 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9783 2.1768 0.0902 34 1 3.8508 0.5687 0.8427 35 1 5.6598 0.2962 -2.3684 36 1 5.8777 1.3007 -0.9153 37 1 3.8217 -1.3660 -0.1605 38 1 4.5643 -2.1283 -1.5877 39 1 4.4999 -2.0453 2.1175 40 1 5.6882 -3.3493 2.3573 41 1 8.0511 -2.8625 1.8294 42 1 8.4491 -1.2319 1.2345 43 1 6.9114 -1.6462 -2.1126 44 1 7.8263 -0.5429 -1.0563 45 1 6.1306 -3.2303 -2.2978 46 1 7.1051 -4.6589 -1.8767 47 1 5.0924 -5.7515 -0.9259 48 1 4.1179 -4.3228 -1.3471 49 1 2.0925 -7.1610 -2.5314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277942980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:57 Heat of formation + Delta-G solvation = -125.164768 kcal Electronic energy + Delta-G solvation = -29163.109883 eV Core-core repulsion = 25318.483833 eV Total energy + Delta-G solvation = -3844.626051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96486 -39.54219 -38.37755 -37.36228 -35.88358 -34.72467 -33.69340 -31.86201 -31.11033 -28.57690 -27.58522 -27.26109 -26.67517 -25.67077 -23.90232 -23.71324 -23.05607 -22.23583 -19.07618 -18.76126 -18.15255 -17.79779 -17.37776 -16.95167 -16.89949 -16.64451 -16.45585 -16.31488 -16.27416 -15.67293 -15.45278 -15.26906 -15.13478 -14.65653 -14.41559 -14.23973 -14.02568 -13.50507 -13.34706 -13.16694 -12.95450 -12.85245 -12.71867 -12.62879 -12.46329 -12.35528 -12.24675 -11.99403 -11.89687 -11.80389 -11.43459 -11.22426 -11.15051 -10.87089 -10.62357 -10.57367 -10.35725 -9.47012 -8.85461 -8.23009 -6.34194 1.35802 1.36395 1.49300 2.36464 2.67952 2.75900 2.89406 3.06976 3.10317 3.19075 3.90886 4.01126 4.02404 4.05095 4.06935 4.12745 4.26397 4.31922 4.35890 4.39558 4.46173 4.50286 4.53124 4.55449 4.57191 4.60745 4.66926 4.68586 4.72880 4.79306 4.85162 4.85293 4.90866 4.92067 5.00335 5.04824 5.13499 5.41386 5.62316 5.70064 5.74837 5.97545 6.07379 6.22597 6.26319 6.27448 6.41200 6.44914 6.81626 7.34561 8.89156 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.005186 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.930712 B = 5398.369011 C = 7079.518101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.059 3.941 4 C 0.063 3.937 5 O -0.403 6.403 6 C 0.223 3.777 7 N -0.526 5.526 8 C 0.059 3.941 9 C 0.047 3.953 10 H 0.070 0.930 11 C 0.092 3.908 12 O -0.362 6.362 13 C 0.085 3.915 14 C 0.041 3.959 15 H 0.106 0.894 16 C 0.031 3.969 17 N -0.531 5.531 18 C 0.078 3.922 19 C 0.036 3.964 20 C -0.543 4.543 21 H 0.055 0.945 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.964 3.036 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.279 1.279 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.080 0.920 38 H -0.004 1.004 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.120 0.880 43 H 0.017 0.983 44 H 0.109 0.891 45 H 0.017 0.983 46 H 0.063 0.937 47 H -0.009 1.009 48 H -0.003 1.003 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 18.886 7.877 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.013 4.013 5 O -0.319 6.319 6 C 0.059 3.941 7 N -0.258 5.258 8 C -0.071 4.071 9 C -0.063 4.063 10 H 0.088 0.912 11 C 0.015 3.985 12 O -0.280 6.280 13 C 0.007 3.993 14 C -0.067 4.067 15 H 0.124 0.876 16 C -0.098 4.098 17 N -0.255 5.255 18 C -0.049 4.049 19 C -0.001 4.001 20 C -0.582 4.582 21 H 0.073 0.927 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.788 3.212 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.204 1.204 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.014 0.986 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.036 0.964 44 H 0.127 0.873 45 H 0.036 0.964 46 H 0.081 0.919 47 H 0.010 0.990 48 H 0.015 0.985 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.612 18.546 8.621 20.965 hybrid contribution -1.076 -0.542 -2.460 2.739 sum 3.536 18.004 6.161 19.354 Atomic orbital electron populations 1.22851 0.79877 1.03122 1.00954 1.87978 1.21207 1.28989 1.95576 1.22764 0.92205 0.84851 1.01905 1.22729 0.93439 0.98205 0.86923 1.88012 1.22530 1.82155 1.39185 1.23388 0.80882 0.93675 0.96190 1.62623 1.03208 1.06459 1.53463 1.22118 0.95686 0.92380 0.96906 1.22484 0.92538 0.94545 0.96716 0.91241 1.22356 0.91638 0.92028 0.92504 1.87962 1.19487 1.37762 1.82774 1.22571 0.86892 0.99538 0.90262 1.22722 0.95709 0.89804 0.98510 0.87572 1.22668 0.92792 0.98594 0.95759 1.62713 1.06842 1.33293 1.22653 1.21981 0.98867 0.96331 0.87702 1.18981 0.92201 0.93580 0.95357 1.21584 1.09978 1.30052 0.96551 0.92677 1.25919 0.95495 0.96530 1.01480 1.70105 1.14620 1.37603 1.34525 0.85424 0.78193 0.78249 0.79337 1.18748 1.19961 1.20448 0.91996 0.93507 0.90230 0.89179 0.92483 0.89031 0.92682 0.92726 0.88537 0.90178 0.98564 0.88534 0.93066 0.92930 0.86194 0.96443 0.87317 0.96443 0.91869 0.99031 0.98480 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.42 -12.22 10.67 -144.34 -1.54 -13.76 16 3 C 0.06 1.27 6.32 71.98 0.45 1.72 16 4 C 0.06 1.44 5.56 71.98 0.40 1.84 16 5 O -0.40 -12.03 8.86 -144.34 -1.28 -13.31 16 6 C 0.22 5.90 6.52 127.69 0.83 6.73 16 7 N -0.53 -15.68 3.30 ******* -3.35 -19.03 16 8 C 0.06 2.23 3.96 86.33 0.34 2.57 16 9 C 0.05 1.78 2.48 44.95 0.11 1.89 16 10 H 0.07 3.18 6.02 -2.39 -0.01 3.17 16 11 C 0.09 2.88 6.42 72.03 0.46 3.35 16 12 O -0.36 -10.39 9.25 -148.98 -1.38 -11.76 16 13 C 0.08 2.04 6.41 72.03 0.46 2.50 16 14 C 0.04 1.18 3.05 44.95 0.14 1.32 16 15 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 16 C 0.03 0.86 4.53 86.33 0.39 1.25 16 17 N -0.53 -19.99 4.84 -843.94 -4.08 -24.07 16 18 C 0.08 3.50 4.46 86.30 0.39 3.88 16 19 C 0.04 2.00 4.18 29.85 0.12 2.13 16 20 C -0.54 -32.22 9.11 25.60 0.23 -31.99 16 21 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 22 C 0.00 0.24 5.46 84.65 0.46 0.70 16 23 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 24 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.49 8.10 -2.39 -0.02 1.47 16 34 H 0.05 1.43 7.67 -2.39 -0.02 1.41 16 35 H 0.06 1.50 7.84 -2.39 -0.02 1.48 16 36 H 0.10 1.94 7.93 -2.38 -0.02 1.92 16 37 H 0.08 3.17 6.10 -2.39 -0.01 3.16 16 38 H 0.00 -0.19 6.39 -2.39 -0.02 -0.20 16 39 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.02 0.57 6.29 -2.39 -0.02 0.55 16 44 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.02 0.80 5.03 -2.39 -0.01 0.79 16 46 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H 0.00 -0.18 5.74 -2.39 -0.01 -0.20 16 49 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.87 369.54 -2.36 -75.23 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.91 Total: 17.03 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.05 Total: -0.25 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -7.15 Total: -100.93 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -4.20 Total: -38.84 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.87 -2.36 -75.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277942980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.935 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds