Wall clock time and date at job start Tue Mar 31 2020 10:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00222 * 2 1 4 4 C 1.52994 * 109.47479 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47253 * 65.00026 * 4 3 2 6 6 C 1.42891 * 113.99913 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47388 * 80.00264 * 6 5 4 8 8 C 1.47000 * 111.00612 * 154.99629 * 7 6 5 9 9 C 1.53140 * 109.26079 * 177.77370 * 8 7 6 10 10 H 1.09000 * 109.65138 * 177.93649 * 9 8 7 11 11 C 1.53140 * 109.26245 * 298.13411 * 9 8 7 12 12 N 1.47007 * 109.23100 * 62.45988 * 11 9 8 13 13 C 1.46893 * 111.00257 * 182.25213 * 12 11 9 14 14 C 1.53004 * 109.47285 * 170.00277 * 13 12 11 15 15 C 1.50701 * 109.47211 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 C 1.47007 * 110.81610 * 58.41992 * 12 11 9 24 24 C 1.53159 * 108.76236 * 300.66827 * 23 12 11 25 25 H 1.09004 * 109.64821 * 178.24926 * 24 23 12 26 26 C 1.47009 * 110.99991 * 31.27470 * 7 6 5 27 27 O 1.43186 * 109.57914 * 57.54880 * 9 8 7 28 28 H 1.08998 * 109.47442 * 300.00203 * 1 2 3 29 29 H 1.09004 * 109.46870 * 60.00106 * 1 2 3 30 30 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46969 * 59.99412 * 3 2 1 32 32 H 1.09003 * 109.47154 * 300.00142 * 3 2 1 33 33 H 1.09001 * 109.47266 * 305.00107 * 4 3 2 34 34 H 1.09002 * 109.47292 * 185.00383 * 4 3 2 35 35 H 1.09004 * 109.47737 * 319.99780 * 6 5 4 36 36 H 1.09004 * 109.47178 * 200.00308 * 6 5 4 37 37 H 1.09006 * 109.50594 * 57.84046 * 8 7 6 38 38 H 1.09003 * 109.54535 * 297.73501 * 8 7 6 39 39 H 1.09006 * 109.50779 * 302.53428 * 11 9 8 40 40 H 1.08999 * 109.51248 * 182.38636 * 11 9 8 41 41 H 1.09000 * 109.47823 * 49.99638 * 13 12 11 42 42 H 1.09007 * 109.47029 * 289.99406 * 13 12 11 43 43 H 1.09000 * 109.47211 * 59.98987 * 14 13 12 44 44 H 1.09007 * 109.46376 * 299.99529 * 14 13 12 45 45 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.50221 * 61.53490 * 23 12 11 47 47 H 1.09002 * 109.50684 * 181.66249 * 23 12 11 48 48 H 1.09006 * 109.50951 * 302.17270 * 26 7 6 49 49 H 1.09004 * 109.51436 * 62.26816 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5793 -1.2202 6 6 5.3822 0.4198 -1.3220 7 7 5.7972 -0.7674 -0.5629 8 6 7.0585 -1.3126 -1.0854 9 6 7.4819 -2.5121 -0.2327 10 1 8.3975 -2.9440 -0.6367 11 6 7.7227 -2.0488 1.2069 12 7 6.4665 -1.5267 1.7641 13 6 6.6658 -1.0211 3.1288 14 6 5.4141 -0.2661 3.5809 15 6 5.6183 0.2520 4.9812 16 1 6.5477 0.0614 5.4973 17 6 4.6163 0.9639 5.6057 18 7 4.7924 1.4114 6.8299 19 14 3.0087 1.2931 4.7133 20 1 2.0547 0.1887 4.9882 21 1 2.4316 2.5757 5.1897 22 1 3.2616 1.3764 3.2523 23 6 5.4140 -2.5524 1.7305 24 6 5.1941 -2.9853 0.2779 25 1 4.4373 -3.7689 0.2395 26 6 4.7429 -1.7919 -0.5693 27 8 6.4419 -3.4963 -0.2390 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1766 0.0903 35 1 5.8774 1.3020 -0.9161 36 1 5.6597 0.2970 -2.3689 37 1 7.8316 -0.5453 -1.0436 38 1 6.9178 -1.6316 -2.1181 39 1 8.4787 -1.2635 1.2149 40 1 8.0652 -2.8911 1.8080 41 1 7.5224 -0.3473 3.1453 42 1 6.8486 -1.8578 3.8031 43 1 4.5575 -0.9400 3.5643 44 1 5.2313 0.5706 2.9065 45 1 4.0877 1.9125 7.2692 46 1 5.7155 -3.4034 2.3413 47 1 4.4858 -2.1345 2.1204 48 1 3.8269 -1.3742 -0.1512 49 1 4.5596 -2.1194 -1.5926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277943256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:55 Heat of formation + Delta-G solvation = -100.171614 kcal Electronic energy + Delta-G solvation = -29455.635577 eV Core-core repulsion = 25612.093310 eV Total energy + Delta-G solvation = -3843.542266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46866 -38.46210 -37.34062 -35.87691 -34.54339 -32.87001 -32.50373 -30.44378 -30.17753 -27.75454 -26.28727 -26.26872 -25.39300 -23.52703 -22.88846 -22.51090 -21.61584 -19.89688 -18.34458 -17.19818 -16.87714 -16.71998 -16.25671 -15.87857 -15.73435 -15.29764 -15.24127 -15.00367 -14.41846 -14.24923 -14.15589 -14.07722 -13.87782 -13.29052 -12.97916 -12.88064 -12.76647 -12.49999 -12.34522 -11.82244 -11.64701 -11.47928 -11.41669 -11.37029 -11.12784 -10.97211 -10.84830 -10.75561 -10.22288 -9.96373 -9.86642 -9.77500 -9.68271 -9.58515 -9.28069 -9.14365 -8.49647 -8.04773 -7.37161 -6.01713 -3.98724 3.31686 3.38258 3.43276 3.70742 3.80771 3.87120 4.04198 4.47093 4.47678 4.96282 5.00681 5.06305 5.11234 5.16519 5.19913 5.22528 5.32548 5.33399 5.34178 5.42849 5.48866 5.51734 5.57492 5.61269 5.66464 5.67803 5.75332 5.83124 5.90552 5.99280 6.01860 6.09423 6.20360 6.26061 6.36446 6.45644 6.85251 6.87245 7.14167 7.18540 7.23413 7.26204 7.42383 7.53402 7.71993 7.76636 7.93592 8.57618 9.03614 9.61349 11.11916 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.006858 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.741126 B = 4082.031071 C = 6080.913382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.382 6.382 6 C 0.227 3.773 7 N -0.516 5.516 8 C 0.043 3.957 9 C 0.092 3.908 10 H 0.103 0.897 11 C 0.035 3.965 12 N -0.501 5.501 13 C 0.072 3.928 14 C 0.000 4.000 15 C -0.518 4.518 16 H 0.069 0.931 17 C 0.067 3.933 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.260 1.260 23 C 0.036 3.964 24 C 0.089 3.911 25 H 0.103 0.897 26 C 0.048 3.952 27 O -0.382 6.382 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.008 0.992 44 H 0.024 0.976 45 H 0.262 0.738 46 H 0.033 0.967 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -3.758 -18.725 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.298 6.298 6 C 0.062 3.938 7 N -0.247 5.247 8 C -0.086 4.086 9 C 0.034 3.966 10 H 0.121 0.879 11 C -0.094 4.094 12 N -0.225 5.225 13 C -0.055 4.055 14 C -0.038 4.038 15 C -0.556 4.556 16 H 0.087 0.913 17 C -0.134 4.134 18 N -0.546 5.546 19 Si 0.705 3.295 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.185 1.185 23 C -0.093 4.093 24 C 0.031 3.969 25 H 0.120 0.880 26 C -0.080 4.080 27 O -0.300 6.300 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.026 0.974 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.757 -3.491 -18.614 19.020 hybrid contribution -0.780 -0.038 -0.211 0.809 sum -2.537 -3.529 -18.825 19.321 Atomic orbital electron populations 1.22724 0.81487 1.02672 0.99668 1.87953 1.19237 1.27417 1.95324 1.22596 0.92906 0.85358 1.00442 1.22646 0.92405 0.98086 0.88361 1.87921 1.21744 1.81764 1.38370 1.23240 0.81132 0.93831 0.95612 1.62513 1.02912 1.06290 1.53008 1.22502 0.93227 0.97277 0.95586 1.22357 0.90741 0.88328 0.95181 0.87933 1.22572 0.93791 0.98422 0.94603 1.62292 1.04636 1.33311 1.22246 1.22120 1.00645 0.97400 0.85370 1.19487 0.92707 0.95323 0.96252 1.21139 1.02769 1.33780 0.97927 0.91292 1.24990 0.98449 0.95320 0.94649 1.69922 1.33899 1.37983 1.12749 0.86797 0.84119 0.77485 0.81053 1.20494 1.21721 1.18473 1.22604 0.97933 0.93824 0.94919 1.22751 0.85851 0.95331 0.92928 0.87972 1.22370 0.96136 0.91626 0.97820 1.88379 1.20240 1.36651 1.84777 0.94195 0.94358 0.89694 0.91909 0.92912 0.90041 0.91768 0.91273 0.92520 0.90000 0.94987 0.90281 0.95241 0.91769 0.96288 0.97381 0.95727 0.92866 0.94916 0.89427 0.88221 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.64 10.67 -40.07 -0.43 -6.06 16 3 C 0.06 0.87 6.32 37.15 0.23 1.10 16 4 C 0.06 0.90 5.57 37.15 0.21 1.11 16 5 O -0.38 -5.53 8.87 -40.07 -0.36 -5.89 16 6 C 0.23 2.94 6.52 60.06 0.39 3.33 16 7 N -0.52 -7.26 3.26 -240.11 -0.78 -8.05 16 8 C 0.04 0.52 4.94 -3.70 -0.02 0.50 16 9 C 0.09 1.19 3.96 -26.59 -0.11 1.09 16 10 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 11 C 0.04 0.51 5.06 -3.69 -0.02 0.49 16 12 N -0.50 -8.62 3.03 -234.25 -0.71 -9.33 16 13 C 0.07 1.46 4.90 -3.83 -0.02 1.44 16 14 C 0.00 0.00 3.98 -27.88 -0.11 -0.11 16 15 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 19 Si 0.88 21.61 27.46 -169.99 -4.67 16.94 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.00 6.55 56.52 0.37 -5.63 16 23 C 0.04 0.60 4.91 -3.68 -0.02 0.58 16 24 C 0.09 1.31 3.96 -26.57 -0.11 1.21 16 25 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 26 C 0.05 0.71 4.58 -3.69 -0.02 0.69 16 27 O -0.38 -5.69 10.68 -35.23 -0.38 -6.07 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.45 7.67 -51.93 -0.40 1.05 16 34 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 36 H 0.06 0.65 7.83 -51.93 -0.41 0.25 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 42 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.01 0.19 5.94 -51.93 -0.31 -0.12 16 44 H 0.02 0.60 7.21 -51.93 -0.37 0.22 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.59 6.39 -51.93 -0.33 1.26 16 48 H 0.10 1.63 6.15 -51.93 -0.32 1.31 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -32.05 374.95 -8.68 -40.73 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.89 Total: -0.31 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 1.10 Total: -0.34 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.72 Total: -44.65 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.16 Total: -18.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.05 -8.68 -40.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.442 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds