Wall clock time and date at job start Tue Mar 31 2020 10:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00222 * 2 1 4 4 C 1.52994 * 109.47479 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47253 * 65.00026 * 4 3 2 6 6 C 1.42891 * 113.99913 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47388 * 80.00264 * 6 5 4 8 8 C 1.47000 * 111.00612 * 154.99629 * 7 6 5 9 9 C 1.53140 * 109.26079 * 177.77370 * 8 7 6 10 10 H 1.09000 * 109.65138 * 177.93649 * 9 8 7 11 11 C 1.53140 * 109.26245 * 298.13411 * 9 8 7 12 12 N 1.47007 * 109.23100 * 62.45988 * 11 9 8 13 13 C 1.46893 * 111.00257 * 182.25213 * 12 11 9 14 14 C 1.53004 * 109.47285 * 170.00277 * 13 12 11 15 15 C 1.50701 * 109.47211 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 C 1.47007 * 110.81610 * 58.41992 * 12 11 9 24 24 C 1.53159 * 108.76236 * 300.66827 * 23 12 11 25 25 H 1.09004 * 109.64821 * 178.24926 * 24 23 12 26 26 C 1.47009 * 110.99991 * 31.27470 * 7 6 5 27 27 O 1.43186 * 109.57914 * 57.54880 * 9 8 7 28 28 H 1.08998 * 109.47442 * 300.00203 * 1 2 3 29 29 H 1.09004 * 109.46870 * 60.00106 * 1 2 3 30 30 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46969 * 59.99412 * 3 2 1 32 32 H 1.09003 * 109.47154 * 300.00142 * 3 2 1 33 33 H 1.09001 * 109.47266 * 305.00107 * 4 3 2 34 34 H 1.09002 * 109.47292 * 185.00383 * 4 3 2 35 35 H 1.09004 * 109.47737 * 319.99780 * 6 5 4 36 36 H 1.09004 * 109.47178 * 200.00308 * 6 5 4 37 37 H 1.09006 * 109.50594 * 57.84046 * 8 7 6 38 38 H 1.09003 * 109.54535 * 297.73501 * 8 7 6 39 39 H 1.09006 * 109.50779 * 302.53428 * 11 9 8 40 40 H 1.08999 * 109.51248 * 182.38636 * 11 9 8 41 41 H 1.09000 * 109.47823 * 49.99638 * 13 12 11 42 42 H 1.09007 * 109.47029 * 289.99406 * 13 12 11 43 43 H 1.09000 * 109.47211 * 59.98987 * 14 13 12 44 44 H 1.09007 * 109.46376 * 299.99529 * 14 13 12 45 45 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.50221 * 61.53490 * 23 12 11 47 47 H 1.09002 * 109.50684 * 181.66249 * 23 12 11 48 48 H 1.09006 * 109.50951 * 302.17270 * 26 7 6 49 49 H 1.09004 * 109.51436 * 62.26816 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5793 -1.2202 6 6 5.3822 0.4198 -1.3220 7 7 5.7972 -0.7674 -0.5629 8 6 7.0585 -1.3126 -1.0854 9 6 7.4819 -2.5121 -0.2327 10 1 8.3975 -2.9440 -0.6367 11 6 7.7227 -2.0488 1.2069 12 7 6.4665 -1.5267 1.7641 13 6 6.6658 -1.0211 3.1288 14 6 5.4141 -0.2661 3.5809 15 6 5.6183 0.2520 4.9812 16 1 6.5477 0.0614 5.4973 17 6 4.6163 0.9639 5.6057 18 7 4.7924 1.4114 6.8299 19 14 3.0087 1.2931 4.7133 20 1 2.0547 0.1887 4.9882 21 1 2.4316 2.5757 5.1897 22 1 3.2616 1.3764 3.2523 23 6 5.4140 -2.5524 1.7305 24 6 5.1941 -2.9853 0.2779 25 1 4.4373 -3.7689 0.2395 26 6 4.7429 -1.7919 -0.5693 27 8 6.4419 -3.4963 -0.2390 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1766 0.0903 35 1 5.8774 1.3020 -0.9161 36 1 5.6597 0.2970 -2.3689 37 1 7.8316 -0.5453 -1.0436 38 1 6.9178 -1.6316 -2.1181 39 1 8.4787 -1.2635 1.2149 40 1 8.0652 -2.8911 1.8080 41 1 7.5224 -0.3473 3.1453 42 1 6.8486 -1.8578 3.8031 43 1 4.5575 -0.9400 3.5643 44 1 5.2313 0.5706 2.9065 45 1 4.0877 1.9125 7.2692 46 1 5.7155 -3.4034 2.3413 47 1 4.4858 -2.1345 2.1204 48 1 3.8269 -1.3742 -0.1512 49 1 4.5596 -2.1194 -1.5926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:54 Heat of formation + Delta-G solvation = -124.077218 kcal Electronic energy + Delta-G solvation = -29456.672201 eV Core-core repulsion = 25612.093310 eV Total energy + Delta-G solvation = -3844.578891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61344 -39.52085 -38.37811 -37.32196 -35.62373 -34.94520 -33.65368 -32.21349 -31.30603 -29.04723 -27.47011 -27.22734 -26.82104 -24.97539 -24.07670 -23.62516 -22.88198 -21.64658 -19.48472 -19.02030 -18.16996 -17.83685 -17.38718 -16.97174 -16.84267 -16.55954 -16.36004 -16.25001 -16.02593 -15.54774 -15.33539 -15.21597 -15.11743 -14.76363 -14.66019 -14.32407 -14.08032 -13.88733 -13.34442 -13.29321 -12.97274 -12.82559 -12.59897 -12.57292 -12.40048 -12.28621 -12.05707 -11.91622 -11.85200 -11.70008 -11.59273 -11.32781 -11.20915 -10.82136 -10.70892 -10.62674 -10.51702 -9.23133 -8.64439 -8.28519 -6.31675 1.34929 1.35963 1.50380 2.36971 2.69312 2.77154 2.85969 3.01229 3.07412 3.14692 3.88214 3.90387 3.98056 4.05947 4.09317 4.13147 4.23305 4.34148 4.38877 4.45821 4.47392 4.51400 4.52964 4.56359 4.59173 4.61716 4.70437 4.72875 4.77634 4.78571 4.84337 4.84969 4.89432 4.91782 5.00175 5.05560 5.16157 5.35828 5.54018 5.66802 5.79505 6.10330 6.16904 6.20195 6.24155 6.34063 6.37831 6.50583 6.76254 7.32779 8.88289 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.006858 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.741126 B = 4082.031071 C = 6080.913382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.388 6.388 6 C 0.225 3.775 7 N -0.535 5.535 8 C 0.044 3.956 9 C 0.092 3.908 10 H 0.134 0.866 11 C 0.033 3.967 12 N -0.497 5.497 13 C 0.084 3.916 14 C 0.014 3.986 15 C -0.529 4.529 16 H 0.029 0.971 17 C 0.008 3.992 18 N -0.952 5.952 19 Si 0.946 3.054 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.238 1.238 23 C 0.037 3.963 24 C 0.095 3.905 25 H 0.116 0.884 26 C 0.060 3.940 27 O -0.390 6.390 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.024 0.976 41 H 0.061 0.939 42 H 0.004 0.996 43 H 0.007 0.993 44 H 0.024 0.976 45 H 0.265 0.735 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 -3.770 -21.658 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.304 6.304 6 C 0.061 3.939 7 N -0.266 5.266 8 C -0.084 4.084 9 C 0.034 3.966 10 H 0.152 0.848 11 C -0.095 4.095 12 N -0.221 5.221 13 C -0.044 4.044 14 C -0.023 4.023 15 C -0.567 4.567 16 H 0.048 0.952 17 C -0.189 4.189 18 N -0.593 5.593 19 Si 0.769 3.231 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.161 1.161 23 C -0.091 4.091 24 C 0.037 3.963 25 H 0.134 0.866 26 C -0.068 4.068 27 O -0.309 6.309 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.265 -3.515 -21.572 21.974 hybrid contribution -0.518 -0.066 0.749 0.913 sum -2.783 -3.582 -20.823 21.311 Atomic orbital electron populations 1.22913 0.79786 1.03744 1.00663 1.87915 1.21227 1.28144 1.95537 1.22648 0.92107 0.85271 1.01423 1.22577 0.93459 0.97792 0.87367 1.87914 1.22698 1.81824 1.37977 1.23363 0.80481 0.93492 0.96599 1.62486 1.03477 1.06521 1.54164 1.22556 0.92670 0.97317 0.95818 1.22586 0.91437 0.88632 0.93952 0.84839 1.22702 0.92569 0.98568 0.95686 1.62252 1.06186 1.34074 1.19616 1.21821 0.98743 0.96603 0.87201 1.19279 0.94284 0.95342 0.93427 1.21454 1.01372 1.33910 0.99979 0.95215 1.25934 1.02582 0.94993 0.95390 1.70072 1.35470 1.39118 1.14647 0.85722 0.78908 0.77535 0.80901 1.19971 1.20965 1.16109 1.22581 0.96883 0.93150 0.96530 1.22717 0.86452 0.95914 0.91236 0.86597 1.22164 0.95675 0.91516 0.97490 1.88378 1.20454 1.37481 1.84544 0.93826 0.92680 0.88708 0.91702 0.91043 0.93426 0.90688 0.90951 0.90557 0.88315 0.93750 0.89088 0.95817 0.92028 0.97786 0.97460 0.95773 0.92591 0.95693 0.91256 0.90144 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -11.51 10.67 -144.35 -1.54 -13.05 16 3 C 0.06 1.57 6.32 71.98 0.45 2.03 16 4 C 0.06 1.81 5.57 71.98 0.40 2.21 16 5 O -0.39 -10.52 8.87 -144.35 -1.28 -11.80 16 6 C 0.23 5.29 6.52 127.69 0.83 6.12 16 7 N -0.53 -13.87 3.26 ******* -3.30 -17.18 16 8 C 0.04 0.93 4.94 86.33 0.43 1.35 16 9 C 0.09 2.09 3.96 30.69 0.12 2.21 16 10 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 11 C 0.03 0.91 5.06 86.33 0.44 1.34 16 12 N -0.50 -16.75 3.03 -895.03 -2.71 -19.46 16 13 C 0.08 3.47 4.90 86.31 0.42 3.89 16 14 C 0.01 0.69 3.98 29.85 0.12 0.81 16 15 C -0.53 -31.02 9.66 25.60 0.25 -30.78 16 16 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 17 C 0.01 0.45 5.47 84.65 0.46 0.91 16 18 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 19 Si 0.95 44.78 27.46 68.60 1.88 46.67 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.24 -10.32 6.55 99.48 0.65 -9.67 16 23 C 0.04 1.23 4.91 86.34 0.42 1.66 16 24 C 0.09 2.64 3.96 30.70 0.12 2.76 16 25 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 26 C 0.06 1.65 4.58 86.33 0.40 2.05 16 27 O -0.39 -10.64 10.68 -148.98 -1.59 -12.23 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.66 7.67 -2.39 -0.02 1.64 16 34 H 0.08 1.88 8.09 -2.39 -0.02 1.87 16 35 H 0.07 1.65 7.93 -2.38 -0.02 1.63 16 36 H 0.08 1.50 7.83 -2.38 -0.02 1.48 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 39 H 0.09 2.27 8.09 -2.38 -0.02 2.25 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 42 H 0.00 0.17 8.12 -2.38 -0.02 0.15 16 43 H 0.01 0.35 5.94 -2.39 -0.01 0.33 16 44 H 0.02 1.16 7.21 -2.38 -0.02 1.15 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 2.53 6.39 -2.39 -0.02 2.52 16 48 H 0.08 2.57 6.15 -2.38 -0.01 2.55 16 49 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -70.30 374.95 -1.28 -71.58 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.84 Total: 17.27 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 6.11 Total: -1.67 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -5.72 Total: -96.76 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -4.41 Total: -37.08 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -70.30 -1.28 -71.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.496 kcal (2) G-P(sol) polarization free energy of solvation -70.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds