Wall clock time and date at job start Tue Mar 31 2020 11:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38834 * 119.73611 * 2 1 4 4 C 1.37745 * 120.66784 * 179.97438 * 3 2 1 5 5 C 1.39129 * 119.77794 * 359.75716 * 4 3 2 6 6 N 1.37687 * 133.50248 * 179.54319 * 5 4 3 7 7 H 0.97001 * 125.06642 * 0.73659 * 6 5 4 8 8 C 1.36831 * 109.87412 * 180.46464 * 6 5 4 9 9 C 1.34247 * 109.92819 * 0.26491 * 8 6 5 10 10 C 1.50700 * 126.50141 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47395 * 265.03050 * 10 9 8 12 12 N 1.46906 * 109.47154 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99685 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46821 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46739 * 300.00013 * 14 13 12 16 16 C 1.53004 * 109.47131 * 59.99788 * 14 13 12 17 17 C 1.53001 * 109.47171 * 179.97438 * 14 13 12 18 18 C 1.50692 * 109.46968 * 179.97438 * 17 14 13 19 19 H 1.07999 * 120.00644 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00020 * 180.02562 * 18 17 14 21 21 N 1.31520 * 120.00003 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00286 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47146 * 59.99461 * 22 20 18 24 24 H 1.48505 * 109.46964 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47010 * 299.99324 * 22 20 18 26 26 C 1.40672 * 119.33334 * 0.51929 * 5 4 3 27 27 C 1.36625 * 119.73732 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47525 * 270.02701 * 1 2 3 29 29 H 1.09008 * 109.46900 * 30.02723 * 1 2 3 30 30 H 1.09007 * 109.47085 * 150.02163 * 1 2 3 31 31 H 1.08002 * 119.66613 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.11514 * 180.02562 * 4 3 2 33 33 H 1.07993 * 125.03979 * 180.25086 * 8 6 5 34 34 H 1.09009 * 109.47168 * 25.03096 * 10 9 8 35 35 H 1.09000 * 109.47199 * 145.02681 * 10 9 8 36 36 H 1.09000 * 109.47245 * 300.00081 * 11 10 9 37 37 H 1.09004 * 109.47254 * 60.00168 * 11 10 9 38 38 H 1.00897 * 110.99334 * 56.04534 * 12 11 10 39 39 H 1.09006 * 109.47026 * 299.99668 * 13 12 11 40 40 H 1.08999 * 109.47140 * 60.00125 * 13 12 11 41 41 H 1.08994 * 109.47479 * 60.00041 * 15 14 13 42 42 H 1.09001 * 109.46627 * 179.97438 * 15 14 13 43 43 H 1.09004 * 109.46755 * 299.99863 * 15 14 13 44 44 H 1.08995 * 109.47140 * 60.00067 * 16 14 13 45 45 H 1.08999 * 109.46602 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.47285 * 299.99850 * 16 14 13 47 47 H 1.09004 * 109.46775 * 299.99953 * 17 14 13 48 48 H 1.08999 * 109.46906 * 59.99676 * 17 14 13 49 49 H 0.96994 * 120.00522 * 180.02562 * 21 20 18 50 50 H 1.08004 * 120.11620 * 0.04820 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1955 1.2055 0.0000 4 6 3.5728 1.2279 0.0005 5 6 4.2833 0.0317 0.0062 6 7 5.6260 -0.2732 0.0002 7 1 6.3453 0.3776 0.0003 8 6 5.7946 -1.6311 0.0003 9 6 4.5986 -2.2407 0.0003 10 6 4.3500 -3.7270 -0.0001 11 6 4.1423 -4.2090 -1.4373 12 7 3.9006 -5.6580 -1.4377 13 6 3.6969 -6.1573 -2.8042 14 6 3.4482 -7.6664 -2.7639 15 6 4.6574 -8.3661 -2.1402 16 6 2.2023 -7.9557 -1.9242 17 6 3.2354 -8.1864 -4.1871 18 6 2.9910 -9.6728 -4.1474 19 1 2.9881 -10.1947 -3.2019 20 6 2.7720 -10.3670 -5.3184 21 7 2.7760 -9.7317 -6.4700 22 14 2.4683 -12.2095 -5.2693 23 1 1.2592 -12.4903 -4.4543 24 1 2.2619 -12.7141 -6.6507 25 1 3.6420 -12.8886 -4.6640 26 6 3.5809 -1.1871 0.0002 27 6 2.1846 -1.1863 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6458 2.1352 -0.0004 32 1 4.0994 2.1708 0.0009 33 1 6.7485 -2.1374 0.0001 34 1 5.2086 -4.2392 0.4343 35 1 3.4596 -3.9467 0.5890 36 1 3.2838 -3.6969 -1.8718 37 1 5.0327 -3.9894 -2.0264 38 1 3.1185 -5.8942 -0.8457 39 1 2.8351 -5.6591 -3.2484 40 1 4.5843 -5.9508 -3.4025 41 1 4.8086 -7.9957 -1.1263 42 1 4.4800 -9.4412 -2.1111 43 1 5.5450 -8.1600 -2.7385 44 1 1.3409 -7.4572 -2.3685 45 1 2.0254 -9.0309 -1.8952 46 1 2.3535 -7.5853 -0.9102 47 1 2.3737 -7.6878 -4.6310 48 1 4.1227 -7.9802 -4.7856 49 1 2.6216 -10.2198 -7.2938 50 1 1.6422 -2.1203 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308549100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:35 Heat of formation + Delta-G solvation = 9.175830 kcal Electronic energy + Delta-G solvation = -25268.973863 eV Core-core repulsion = 21873.315272 eV Total energy + Delta-G solvation = -3395.658591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15489 -39.22652 -38.27700 -36.44751 -34.55575 -33.39386 -32.33633 -31.00328 -29.17282 -28.38852 -27.86355 -27.16902 -26.39227 -24.44325 -23.53517 -23.00710 -22.01631 -20.15800 -19.42365 -18.66989 -18.31318 -17.19456 -16.76642 -16.58377 -16.02624 -15.74135 -15.50001 -15.34075 -15.09361 -14.95207 -14.61598 -14.30333 -14.27660 -14.16042 -13.89784 -13.68662 -13.40503 -13.12692 -12.90899 -12.85778 -12.68193 -12.63888 -12.53353 -12.40148 -12.21589 -12.11814 -12.02159 -11.94586 -11.83450 -11.55295 -11.33674 -10.84731 -10.75751 -10.48861 -10.43172 -9.27850 -8.98944 -8.48697 -8.12563 -6.19857 0.23245 0.68791 1.41733 1.44398 1.51594 1.77027 2.31094 2.44993 2.94535 3.20997 3.36014 3.79755 3.93553 4.09407 4.13416 4.20089 4.27335 4.33885 4.39380 4.41031 4.48709 4.55938 4.61387 4.72320 4.79200 4.82871 4.84824 4.88088 4.90886 4.98116 5.04402 5.10985 5.13801 5.20091 5.21055 5.24668 5.27987 5.34226 5.53294 5.55547 5.57086 5.60753 5.68311 5.79347 5.86072 5.88224 5.89770 5.94145 6.11926 6.28258 6.38293 6.58104 6.76782 6.95176 7.47336 8.99736 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002205 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.551043 B =12697.991258 C =13351.470904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.130 4.130 5 C 0.070 3.930 6 N -0.587 5.587 7 H 0.429 0.571 8 C 0.064 3.936 9 C -0.195 4.195 10 C -0.028 4.028 11 C 0.071 3.929 12 N -0.679 5.679 13 C 0.083 3.917 14 C -0.054 4.054 15 C -0.107 4.107 16 C -0.122 4.122 17 C 0.039 3.961 18 C -0.513 4.513 19 H 0.067 0.933 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.958 3.042 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.267 1.267 26 C -0.123 4.123 27 C -0.095 4.095 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.199 0.801 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.012 0.988 37 H 0.063 0.937 38 H 0.343 0.657 39 H 0.011 0.989 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.029 0.971 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.069 0.931 47 H -0.018 1.018 48 H -0.017 1.017 49 H 0.259 0.741 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 23.550 17.778 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C -0.127 4.127 4 C -0.151 4.151 5 C -0.037 4.037 6 N -0.191 5.191 7 H 0.269 0.731 8 C -0.063 4.063 9 C -0.202 4.202 10 C -0.066 4.066 11 C -0.058 4.058 12 N -0.311 5.311 13 C -0.047 4.047 14 C -0.055 4.055 15 C -0.164 4.164 16 C -0.180 4.180 17 C 0.001 3.999 18 C -0.551 4.551 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.581 5.581 22 Si 0.783 3.217 23 H -0.192 1.192 24 H -0.214 1.214 25 H -0.192 1.192 26 C -0.128 4.128 27 C -0.114 4.114 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.216 0.784 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.163 0.837 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.000 1.000 48 H 0.001 0.999 49 H 0.068 0.932 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.749 23.441 17.612 29.558 hybrid contribution -0.782 -0.379 -1.089 1.393 sum 2.966 23.062 16.523 28.525 Atomic orbital electron populations 1.20755 0.89933 1.03068 1.02704 1.19702 0.97162 0.92815 1.02776 1.21009 0.93205 0.98120 1.00389 1.20326 0.94072 0.95363 1.05322 1.18513 0.84477 0.95432 1.05275 1.41730 1.05446 1.07186 1.64721 0.73117 1.22111 0.99916 0.82188 1.02044 1.20345 0.91781 0.94475 1.13629 1.19702 1.02786 0.89066 0.95036 1.21886 0.99499 0.86825 0.97586 1.60533 1.47337 1.13184 1.10088 1.21799 0.98305 0.94701 0.89861 1.20487 0.96193 0.92940 0.95848 1.21506 0.95806 0.99142 0.99954 1.21690 0.96134 1.01433 0.98722 1.19020 0.93826 0.95152 0.91901 1.21588 1.46565 0.94162 0.92820 0.91468 1.25956 0.95800 1.03149 0.95387 1.70111 1.51927 1.37726 0.98316 0.85607 0.79119 0.80047 0.76930 1.19224 1.21420 1.19232 1.19420 0.93606 0.93157 1.06579 1.20298 0.92130 0.98180 1.00755 0.90682 0.90507 0.92080 0.83588 0.83995 0.78404 0.89502 0.91710 0.96993 0.91853 0.83706 0.97070 0.92732 0.91115 0.94197 0.95140 0.94709 0.93315 0.91217 1.00000 0.99856 0.93186 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.99 71.23 0.71 -0.87 16 2 C -0.12 -2.41 5.85 -20.10 -0.12 -2.53 16 3 C -0.11 -1.82 9.66 22.30 0.22 -1.61 16 4 C -0.13 -2.20 10.08 22.37 0.23 -1.97 16 5 C 0.07 1.41 7.28 39.03 0.28 1.69 16 6 N -0.59 -8.70 6.07 -187.60 -1.14 -9.84 16 7 H 0.43 3.42 8.96 -92.71 -0.83 2.58 16 8 C 0.06 1.03 11.73 83.00 0.97 2.01 16 9 C -0.19 -4.13 5.57 -18.63 -0.10 -4.23 16 10 C -0.03 -0.58 6.01 29.85 0.18 -0.40 16 11 C 0.07 1.81 5.67 86.30 0.49 2.30 16 12 N -0.68 -19.29 5.71 -513.86 -2.94 -22.23 16 13 C 0.08 2.97 4.65 86.30 0.40 3.37 16 14 C -0.05 -2.21 0.60 -52.18 -0.03 -2.24 16 15 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 16 C -0.12 -4.51 7.89 71.98 0.57 -3.94 16 17 C 0.04 2.05 4.04 29.85 0.12 2.17 16 18 C -0.51 -28.82 7.65 25.60 0.20 -28.62 16 19 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 20 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 21 N -0.94 -58.37 13.29 21.45 0.28 -58.09 16 22 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 C -0.12 -2.90 6.35 -20.20 -0.13 -3.02 16 27 C -0.09 -2.19 9.67 22.23 0.22 -1.97 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.90 8.08 -2.38 -0.02 0.88 16 30 H 0.06 0.93 8.08 -2.38 -0.02 0.91 16 31 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.34 9.06 6.77 -89.70 -0.61 8.45 16 39 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.32 7.60 -2.39 -0.02 2.30 16 42 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 43 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 46 H 0.07 2.06 6.57 -2.39 -0.02 2.05 16 47 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 48 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 49 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -69.79 397.22 2.96 -66.82 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.52 Total: 19.69 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 5.24 Total: -43.29 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -3.79 Total: -90.16 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.79 2.96 -66.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308549100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.999 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds