Wall clock time and date at job start Tue Mar 31 2020 11:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46839 * 2 1 4 4 C 1.53002 * 109.47070 * 305.14637 * 3 2 1 5 5 C 1.52997 * 109.47423 * 295.13289 * 4 3 2 6 6 C 1.53000 * 109.47716 * 65.14844 * 3 2 1 7 7 N 1.46904 * 109.46641 * 65.00114 * 6 3 2 8 8 C 1.46894 * 110.99988 * 66.05019 * 7 6 3 9 9 C 1.50703 * 109.47050 * 193.95126 * 8 7 6 10 10 H 1.08002 * 119.99814 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00126 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00221 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99869 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47080 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46677 * 120.00147 * 13 11 9 16 16 H 1.48490 * 109.47276 * 239.99873 * 13 11 9 17 17 C 1.46902 * 110.99500 * 190.00140 * 7 6 3 18 18 C 1.50697 * 109.46921 * 169.99820 * 17 7 6 19 19 C 1.38831 * 119.73643 * 90.00089 * 18 17 7 20 20 C 1.37754 * 120.67065 * 180.02562 * 19 18 17 21 21 C 1.39127 * 119.77508 * 359.97438 * 20 19 18 22 22 N 1.37690 * 133.50466 * 180.02562 * 21 20 19 23 23 H 0.96997 * 125.06162 * 359.97438 * 22 21 20 24 24 C 1.36832 * 109.86978 * 180.26071 * 22 21 20 25 25 C 1.34238 * 109.93268 * 359.54762 * 24 22 21 26 26 C 1.40665 * 119.33183 * 359.97438 * 21 20 19 27 27 C 1.36630 * 119.74176 * 269.97865 * 18 17 7 28 28 H 1.09003 * 109.47058 * 185.68811 * 1 2 3 29 29 H 1.09002 * 109.47465 * 305.68773 * 1 2 3 30 30 H 1.08995 * 109.47147 * 65.69106 * 1 2 3 31 31 H 1.08998 * 109.47262 * 239.99751 * 2 1 3 32 32 H 1.09005 * 109.47273 * 119.99239 * 2 1 3 33 33 H 1.09004 * 109.46809 * 185.15379 * 3 2 1 34 34 H 1.09002 * 109.47132 * 55.12675 * 4 3 2 35 35 H 1.09003 * 109.47714 * 175.12650 * 4 3 2 36 36 H 1.09006 * 109.47118 * 305.88747 * 5 4 3 37 37 H 1.09002 * 109.47291 * 65.88347 * 5 4 3 38 38 H 1.08999 * 109.47785 * 185.88503 * 5 4 3 39 39 H 1.09001 * 109.46883 * 305.00160 * 6 3 2 40 40 H 1.08999 * 109.47242 * 184.99849 * 6 3 2 41 41 H 1.08996 * 109.46987 * 313.94843 * 8 7 6 42 42 H 1.08996 * 109.47397 * 73.95053 * 8 7 6 43 43 H 0.96996 * 119.99816 * 179.97438 * 12 11 9 44 44 H 1.09001 * 109.47145 * 50.00283 * 17 7 6 45 45 H 1.08996 * 109.47436 * 290.00054 * 17 7 6 46 46 H 1.08002 * 119.66392 * 359.97438 * 19 18 17 47 47 H 1.07990 * 120.11082 * 179.97438 * 20 19 18 48 48 H 1.07996 * 125.03331 * 179.71475 * 24 22 21 49 49 H 1.07998 * 126.50734 * 180.15005 * 25 24 22 50 50 H 1.08001 * 120.11231 * 0.04188 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4270 2.2001 -1.1795 5 6 1.9261 1.5914 -2.4915 6 6 1.6384 2.1256 1.3089 7 7 2.3226 1.4715 2.4323 8 6 3.7745 1.6824 2.3592 9 6 4.4679 0.7351 3.3041 10 1 3.8880 0.0451 3.8991 11 6 5.8427 0.7485 3.4083 12 7 6.5490 1.5877 2.6827 13 14 6.7021 -0.4253 4.5801 14 1 5.6897 -1.2604 5.2751 15 1 7.6249 -1.3015 3.8146 16 1 7.4748 0.3525 5.5816 17 6 1.7870 1.9379 3.7183 18 6 2.3305 1.0782 4.8302 19 6 3.5169 1.4330 5.4579 20 6 4.0314 0.6609 6.4761 21 6 3.3569 -0.4863 6.8817 22 7 3.6038 -1.4415 7.8422 23 1 4.3698 -1.4483 8.4373 24 6 2.6110 -2.3830 7.8280 25 6 1.7022 -2.0755 6.8891 26 6 2.1547 -0.8409 6.2432 27 6 1.6516 -0.0440 5.2130 28 1 -0.3633 -1.0226 0.1019 29 1 -0.3634 0.5995 0.8347 30 1 -0.3633 0.4230 -0.9365 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 3.1261 1.4439 -0.0923 34 1 0.3405 2.1251 -1.1344 35 1 1.7211 3.2486 -1.1304 36 1 3.0159 1.5712 -2.4912 37 1 1.5439 0.5753 -2.5891 38 1 1.5741 2.1940 -3.3288 39 1 0.5598 2.0459 1.4442 40 1 1.9234 3.1770 1.2723 41 1 4.1178 1.4966 1.3416 42 1 4.0070 2.7098 2.6392 43 1 7.5161 1.5973 2.7563 44 1 0.6992 1.8698 3.7049 45 1 2.0842 2.9738 3.8815 46 1 4.0422 2.3230 5.1442 47 1 4.9552 0.9451 6.9578 48 1 2.5640 -3.2442 8.4778 49 1 0.8092 -2.6346 6.6518 50 1 0.7294 -0.3140 4.7199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308590276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:55 Heat of formation + Delta-G solvation = 41.769523 kcal Electronic energy + Delta-G solvation = -27495.536402 eV Core-core repulsion = 24101.291179 eV Total energy + Delta-G solvation = -3394.245222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92860 -39.83133 -38.24550 -36.08548 -34.58612 -32.65497 -31.89387 -31.19368 -29.89349 -29.14854 -28.39368 -25.71929 -25.10100 -24.09643 -23.35373 -22.37742 -21.62780 -20.87526 -19.59557 -18.73768 -18.56119 -16.96971 -16.83374 -16.50596 -16.18559 -16.02546 -15.57221 -15.11340 -15.06282 -14.88649 -14.54869 -14.25598 -14.06686 -13.88832 -13.70798 -13.60068 -13.45772 -13.24231 -13.05423 -12.77605 -12.74370 -12.64143 -12.53768 -12.34863 -12.29980 -12.00097 -11.79137 -11.56149 -11.33176 -11.15098 -11.06993 -11.00606 -10.88460 -10.49978 -10.35829 -8.87924 -8.64183 -8.39172 -8.14024 -6.03912 0.52343 0.95994 1.29594 1.34597 1.49520 2.04491 2.41745 2.47309 3.07339 3.26880 3.61017 3.96064 4.03113 4.10858 4.18277 4.24193 4.30756 4.47991 4.48680 4.53826 4.57010 4.66365 4.69991 4.72367 4.79595 4.83089 4.87334 4.91871 5.00437 5.05098 5.09588 5.14090 5.15468 5.25452 5.28784 5.32605 5.36486 5.41256 5.45392 5.47436 5.52211 5.68906 5.76476 5.80252 5.84381 6.01117 6.06920 6.11179 6.22353 6.48175 6.51748 6.78128 6.89371 7.03641 7.52062 8.97040 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.005013 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.088230 B = 5584.145140 C = 6820.009043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.081 4.081 4 C -0.114 4.114 5 C -0.148 4.148 6 C 0.061 3.939 7 N -0.529 5.529 8 C 0.206 3.794 9 C -0.472 4.472 10 H 0.084 0.916 11 C 0.012 3.988 12 N -0.933 5.933 13 Si 0.930 3.070 14 H -0.257 1.257 15 H -0.297 1.297 16 H -0.283 1.283 17 C 0.111 3.889 18 C -0.092 4.092 19 C -0.012 4.012 20 C -0.182 4.182 21 C 0.083 3.917 22 N -0.599 5.599 23 H 0.420 0.580 24 C 0.046 3.954 25 C -0.223 4.223 26 C -0.149 4.149 27 C -0.066 4.066 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.010 0.990 41 H 0.009 0.991 42 H -0.044 1.044 43 H 0.257 0.743 44 H 0.091 0.909 45 H 0.019 0.981 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.208 0.792 49 H 0.160 0.840 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 -4.062 3.035 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.100 4.100 4 C -0.152 4.152 5 C -0.205 4.205 6 C -0.067 4.067 7 N -0.252 5.252 8 C 0.080 3.920 9 C -0.509 4.509 10 H 0.101 0.899 11 C -0.185 4.185 12 N -0.575 5.575 13 Si 0.758 3.242 14 H -0.181 1.181 15 H -0.225 1.225 16 H -0.209 1.209 17 C -0.016 4.016 18 C -0.094 4.094 19 C -0.032 4.032 20 C -0.203 4.203 21 C -0.024 4.024 22 N -0.204 5.204 23 H 0.258 0.742 24 C -0.079 4.079 25 C -0.248 4.248 26 C -0.153 4.153 27 C -0.085 4.085 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.028 0.972 41 H 0.027 0.973 42 H -0.026 1.026 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.037 0.963 46 H 0.113 0.887 47 H 0.121 0.879 48 H 0.225 0.775 49 H 0.178 0.822 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.622 -4.538 3.055 13.757 hybrid contribution 2.250 0.694 0.640 2.440 sum -10.372 -3.844 3.695 11.662 Atomic orbital electron populations 1.21764 0.94542 1.01465 1.01933 1.21296 0.96909 0.95338 1.00660 1.21146 0.98727 0.96229 0.93862 1.21559 1.01368 0.98510 0.93740 1.21754 1.00315 1.01403 0.97021 1.22208 0.99139 0.94228 0.91090 1.62119 1.04893 1.57162 1.01069 1.19468 0.83796 0.92803 0.95970 1.21864 0.90820 1.17804 1.20448 0.89863 1.25488 0.98397 0.96943 0.97702 1.70086 1.06151 1.38850 1.42435 0.85901 0.78626 0.79970 0.79724 1.18085 1.22474 1.20866 1.20842 0.98802 0.94144 0.87831 1.19037 0.95774 0.97527 0.97036 1.20339 0.93494 0.98277 0.91091 1.19699 1.01168 0.96434 1.02995 1.18281 0.97337 0.92971 0.93833 1.41857 1.24275 1.21725 1.32505 0.74190 1.22335 0.88781 0.95213 1.01585 1.21922 1.03371 0.98099 1.01405 1.19444 0.96706 0.98898 1.00283 1.20049 0.99996 0.93038 0.95423 0.92949 0.92560 0.91624 0.93011 0.93427 0.94556 0.89872 0.92992 0.94479 0.92071 0.91493 0.89187 0.97225 0.97319 1.02614 0.93451 0.89052 0.96323 0.88664 0.87922 0.77491 0.82215 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.11 71.98 0.66 -2.67 16 2 C -0.10 -3.22 5.28 30.60 0.16 -3.06 16 3 C -0.08 -2.65 2.11 -10.79 -0.02 -2.68 16 4 C -0.11 -2.91 5.07 30.59 0.16 -2.76 16 5 C -0.15 -3.47 9.52 71.98 0.69 -2.79 16 6 C 0.06 2.09 4.22 86.30 0.36 2.46 16 7 N -0.53 -21.79 3.93 -905.39 -3.56 -25.35 16 8 C 0.21 10.63 4.52 85.56 0.39 11.02 16 9 C -0.47 -25.63 5.36 25.60 0.14 -25.50 16 10 H 0.08 4.57 4.73 -2.91 -0.01 4.55 16 11 C 0.01 0.67 5.43 84.65 0.46 1.13 16 12 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 13 Si 0.93 45.85 27.50 68.60 1.89 47.74 16 14 H -0.26 -12.43 6.90 99.48 0.69 -11.75 16 15 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 16 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 17 C 0.11 4.19 5.10 85.56 0.44 4.62 16 18 C -0.09 -3.72 3.42 -20.10 -0.07 -3.79 16 19 C -0.01 -0.52 5.83 22.30 0.13 -0.39 16 20 C -0.18 -7.46 7.74 22.37 0.17 -7.29 16 21 C 0.08 3.12 7.28 39.03 0.28 3.40 16 22 N -0.60 -17.32 6.07 -187.61 -1.14 -18.46 16 23 H 0.42 9.60 8.96 -92.71 -0.83 8.77 16 24 C 0.05 1.12 11.81 83.00 0.98 2.10 16 25 C -0.22 -6.43 11.08 23.51 0.26 -6.17 16 26 C -0.15 -5.48 6.37 -20.20 -0.13 -5.60 16 27 C -0.07 -2.46 9.47 22.23 0.21 -2.25 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.33 6.23 -2.39 -0.01 1.32 16 30 H 0.06 1.32 6.58 -2.39 -0.02 1.30 16 31 H 0.05 1.53 6.96 -2.39 -0.02 1.51 16 32 H 0.05 1.79 7.62 -2.38 -0.02 1.77 16 33 H 0.04 1.49 6.12 -2.38 -0.01 1.48 16 34 H 0.08 1.78 6.19 -2.39 -0.01 1.77 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 1.35 6.98 -2.39 -0.02 1.33 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 2.58 6.03 -2.39 -0.01 2.57 16 40 H 0.01 0.34 8.12 -2.39 -0.02 0.33 16 41 H 0.01 0.50 5.91 -2.39 -0.01 0.49 16 42 H -0.04 -2.50 7.99 -2.39 -0.02 -2.52 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.09 2.84 7.86 -2.39 -0.02 2.83 16 45 H 0.02 0.73 7.95 -2.39 -0.02 0.71 16 46 H 0.10 4.54 7.67 -2.91 -0.02 4.52 16 47 H 0.10 4.05 8.00 -2.92 -0.02 4.03 16 48 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 49 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 50 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -67.59 375.56 2.81 -64.78 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.08 Total: 27.51 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 5.26 Total: -40.21 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.41 Total: -99.82 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.89 Total: 47.74 kcal Total: -67.59 2.81 -64.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308590276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.548 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds