Wall clock time and date at job start Tue Mar 31 2020 10:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.88784 * 51.12506 * 7 6 5 9 9 C 1.55158 * 111.00027 * 175.00235 * 7 6 5 10 10 C 1.54324 * 102.94057 * 153.57833 * 9 7 6 11 11 N 1.47019 * 107.27141 * 337.80485 * 10 9 7 12 12 C 1.34780 * 125.64807 * 178.96309 * 11 10 9 13 13 O 1.21582 * 120.00159 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99888 * 359.97438 * 12 11 10 15 15 C 1.46497 * 119.99843 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47128 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46911 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46962 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99697 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00161 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47048 * 59.99697 * 22 20 18 24 24 H 1.48491 * 109.47446 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46963 * 300.00208 * 22 20 18 26 26 C 1.47423 * 108.70509 * 358.94301 * 11 10 9 27 27 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 31 31 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 32 32 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 33 33 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 34 34 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 35 35 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 36 36 H 1.09005 * 110.72150 * 271.93896 * 9 7 6 37 37 H 1.09001 * 110.72440 * 35.03704 * 9 7 6 38 38 H 1.09001 * 109.88323 * 97.22642 * 10 9 7 39 39 H 1.09000 * 109.88381 * 218.23221 * 10 9 7 40 40 H 0.96999 * 120.00343 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.47132 * 299.99385 * 15 14 12 42 42 H 1.08998 * 109.47607 * 59.99595 * 15 14 12 43 43 H 1.08995 * 109.46727 * 299.99809 * 16 15 14 44 44 H 1.08999 * 109.47061 * 60.00024 * 16 15 14 45 45 H 1.09004 * 109.47346 * 299.99251 * 17 16 15 46 46 H 1.08991 * 109.47399 * 59.99946 * 17 16 15 47 47 H 0.96996 * 120.00286 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.36339 * 265.29272 * 26 11 10 49 49 H 1.08996 * 110.36890 * 142.96395 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.2470 0.2967 -3.4893 9 6 7.2608 -0.3094 -2.8691 10 6 7.4242 -1.5175 -3.8152 11 7 6.2211 -2.3502 -3.6718 12 6 5.9695 -3.4898 -4.3460 13 8 4.9368 -4.0994 -4.1455 14 7 6.8627 -3.9536 -5.2424 15 6 6.5890 -5.1920 -5.9756 16 6 7.7535 -5.4927 -6.9214 17 6 7.4679 -6.7864 -7.6867 18 6 8.6146 -7.0823 -8.6188 19 1 9.4624 -6.4146 -8.6607 20 6 8.5818 -8.2059 -9.4171 21 7 7.5496 -9.0193 -9.3657 22 14 10.0034 -8.5730 -10.5719 23 1 11.2530 -8.7285 -9.7848 24 1 9.7263 -9.8285 -11.3148 25 1 10.1610 -7.4533 -11.5346 26 6 5.3356 -1.7325 -2.6679 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9784 2.1766 0.0889 33 1 3.8514 0.5683 0.8410 34 1 5.8621 1.3963 -1.2631 35 1 5.7357 -0.2119 -0.5109 36 1 7.6333 0.6012 -3.3385 37 1 7.7674 -0.4876 -1.9206 38 1 7.5154 -1.1722 -4.8451 39 1 8.3092 -2.0896 -3.5366 40 1 7.6868 -3.4675 -5.4021 41 1 6.4734 -6.0144 -5.2695 42 1 5.6717 -5.0773 -6.5531 43 1 7.8696 -4.6705 -7.6275 44 1 8.6705 -5.6077 -6.3436 45 1 7.3521 -7.6085 -6.9803 46 1 6.5508 -6.6719 -8.2644 47 1 7.5263 -9.8095 -9.9276 48 1 5.5110 -2.1717 -1.6859 49 1 4.2917 -1.8530 -2.9575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319235400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:32 Heat of formation + Delta-G solvation = -134.688162 kcal Electronic energy + Delta-G solvation = -25598.023752 eV Core-core repulsion = 21752.984736 eV Total energy + Delta-G solvation = -3845.039016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.23299 -38.92616 -38.04450 -37.08247 -35.26171 -33.34785 -32.60937 -31.03893 -30.53847 -29.33884 -27.01105 -26.59285 -25.47927 -23.43377 -22.98189 -22.55188 -20.72623 -20.54098 -19.60175 -17.92465 -17.46510 -17.10487 -16.70456 -16.31724 -15.83875 -15.65530 -15.56800 -15.51317 -14.88855 -14.46220 -14.29788 -14.04492 -13.79817 -13.72699 -13.11277 -12.99961 -12.83259 -12.45780 -12.27928 -12.23485 -11.79490 -11.74729 -11.70773 -11.61048 -11.44831 -11.15308 -10.99695 -10.85547 -10.66850 -10.58864 -10.08697 -10.01874 -9.97537 -9.81071 -9.39683 -9.09898 -8.85114 -8.39466 -8.33533 -5.98225 -4.01381 2.73036 3.16774 3.34218 3.37600 3.38891 3.40820 3.43100 4.08465 4.24305 4.35787 4.47386 4.48928 4.59618 4.72226 4.83735 4.86285 4.92279 4.97465 4.99318 5.04345 5.10367 5.20164 5.23850 5.32205 5.36141 5.37220 5.40334 5.45560 5.67861 5.73289 5.85436 5.87747 5.93197 6.22097 6.24769 6.60854 6.67914 6.70992 6.84085 6.90682 7.07650 7.20424 7.67643 7.81226 8.00774 8.17831 8.41692 8.83195 9.05075 9.62422 11.13005 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.001794 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.540686 B =15608.065140 C =16550.633817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.377 6.377 6 C 0.075 3.925 7 C -0.101 4.101 8 H 0.094 0.906 9 C -0.121 4.121 10 C 0.100 3.900 11 N -0.643 5.643 12 C 0.718 3.282 13 O -0.589 6.589 14 N -0.740 5.740 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.137 3.863 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.063 0.937 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 26.759 21.299 34.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.296 6.296 6 C -0.002 4.002 7 C -0.120 4.120 8 H 0.113 0.887 9 C -0.159 4.159 10 C -0.023 4.023 11 N -0.383 5.383 12 C 0.420 3.580 13 O -0.466 6.466 14 N -0.394 5.394 15 C 0.011 3.989 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.013 3.987 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.746 25.783 21.154 34.026 hybrid contribution 1.183 0.334 -0.538 1.342 sum -5.564 26.118 20.615 33.735 Atomic orbital electron populations 1.22762 0.80920 1.03107 0.99774 1.87990 1.19709 1.27026 1.95344 1.22557 0.92375 0.85748 1.00817 1.22505 0.93481 0.97416 0.87877 1.87988 1.21823 1.82055 1.37770 1.22411 0.81849 0.99227 0.96762 1.22351 0.95855 0.96065 0.97737 0.88734 1.22598 0.95042 0.98096 1.00185 1.21945 0.88613 0.91851 0.99940 1.47589 1.21895 1.24635 1.44171 1.15525 0.83755 0.79634 0.79114 1.90926 1.26915 1.59023 1.69773 1.45389 1.22320 1.28472 1.43225 1.21519 0.99716 0.83636 0.93990 1.21884 0.95634 1.01284 0.96964 1.19029 0.97289 0.90423 0.94649 1.21172 1.04502 1.08187 1.22236 0.92717 1.25030 0.95980 0.96241 0.97225 1.69958 1.29568 1.13779 1.39936 0.86638 0.82689 0.77571 0.80952 1.20277 1.21286 1.20282 1.22003 0.95400 0.90030 0.91232 0.93951 0.89388 0.94261 0.91907 0.92386 0.91837 0.92350 0.92809 0.92773 0.89652 0.90243 0.91462 0.91403 0.77380 0.91952 0.91940 0.92808 0.92814 0.96213 0.96212 0.92891 0.91885 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.77 10.67 -40.09 -0.43 -4.20 16 3 C 0.06 0.42 6.32 37.16 0.23 0.66 16 4 C 0.06 0.42 6.32 37.16 0.23 0.66 16 5 O -0.38 -3.53 10.27 -40.09 -0.41 -3.94 16 6 C 0.07 0.52 5.39 37.16 0.20 0.72 16 7 C -0.10 -0.82 3.30 -88.47 -0.29 -1.11 16 8 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 9 C -0.12 -0.75 6.42 -24.90 -0.16 -0.91 16 10 C 0.10 0.88 6.15 -3.07 -0.02 0.86 16 11 N -0.64 -8.46 3.33 -176.24 -0.59 -9.04 16 12 C 0.72 12.48 8.49 -86.91 -0.74 11.75 16 13 O -0.59 -12.82 16.60 5.29 0.09 -12.74 16 14 N -0.74 -11.92 5.52 -65.22 -0.36 -12.28 16 15 C 0.13 2.55 5.67 -4.04 -0.02 2.53 16 16 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.14 1.62 6.34 -2.53 -0.02 1.60 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.35 7.96 -51.93 -0.41 -0.06 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.39 5.19 7.46 -40.82 -0.30 4.88 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 48 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 49 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -36.09 402.75 -9.18 -45.27 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -9.11 Total: -1.82 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.16 Total: 2.40 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.21 Total: -47.73 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.75 Total: -20.87 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.09 -9.18 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319235400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.418 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds