Wall clock time and date at job start Tue Mar 31 2020 10:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.88784 * 51.12506 * 7 6 5 9 9 C 1.55158 * 111.00027 * 175.00235 * 7 6 5 10 10 C 1.54324 * 102.94057 * 153.57833 * 9 7 6 11 11 N 1.47019 * 107.27141 * 337.80485 * 10 9 7 12 12 C 1.34780 * 125.64807 * 178.96309 * 11 10 9 13 13 O 1.21582 * 120.00159 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99888 * 359.97438 * 12 11 10 15 15 C 1.46497 * 119.99843 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47128 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46911 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46962 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99697 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00161 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47048 * 59.99697 * 22 20 18 24 24 H 1.48491 * 109.47446 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46963 * 300.00208 * 22 20 18 26 26 C 1.47423 * 108.70509 * 358.94301 * 11 10 9 27 27 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 31 31 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 32 32 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 33 33 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 34 34 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 35 35 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 36 36 H 1.09005 * 110.72150 * 271.93896 * 9 7 6 37 37 H 1.09001 * 110.72440 * 35.03704 * 9 7 6 38 38 H 1.09001 * 109.88323 * 97.22642 * 10 9 7 39 39 H 1.09000 * 109.88381 * 218.23221 * 10 9 7 40 40 H 0.96999 * 120.00343 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.47132 * 299.99385 * 15 14 12 42 42 H 1.08998 * 109.47607 * 59.99595 * 15 14 12 43 43 H 1.08995 * 109.46727 * 299.99809 * 16 15 14 44 44 H 1.08999 * 109.47061 * 60.00024 * 16 15 14 45 45 H 1.09004 * 109.47346 * 299.99251 * 17 16 15 46 46 H 1.08991 * 109.47399 * 59.99946 * 17 16 15 47 47 H 0.96996 * 120.00286 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.36339 * 265.29272 * 26 11 10 49 49 H 1.08996 * 110.36890 * 142.96395 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.2470 0.2967 -3.4893 9 6 7.2608 -0.3094 -2.8691 10 6 7.4242 -1.5175 -3.8152 11 7 6.2211 -2.3502 -3.6718 12 6 5.9695 -3.4898 -4.3460 13 8 4.9368 -4.0994 -4.1455 14 7 6.8627 -3.9536 -5.2424 15 6 6.5890 -5.1920 -5.9756 16 6 7.7535 -5.4927 -6.9214 17 6 7.4679 -6.7864 -7.6867 18 6 8.6146 -7.0823 -8.6188 19 1 9.4624 -6.4146 -8.6607 20 6 8.5818 -8.2059 -9.4171 21 7 7.5496 -9.0193 -9.3657 22 14 10.0034 -8.5730 -10.5719 23 1 11.2530 -8.7285 -9.7848 24 1 9.7263 -9.8285 -11.3148 25 1 10.1610 -7.4533 -11.5346 26 6 5.3356 -1.7325 -2.6679 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9784 2.1766 0.0889 33 1 3.8514 0.5683 0.8410 34 1 5.8621 1.3963 -1.2631 35 1 5.7357 -0.2119 -0.5109 36 1 7.6333 0.6012 -3.3385 37 1 7.7674 -0.4876 -1.9206 38 1 7.5154 -1.1722 -4.8451 39 1 8.3092 -2.0896 -3.5366 40 1 7.6868 -3.4675 -5.4021 41 1 6.4734 -6.0144 -5.2695 42 1 5.6717 -5.0773 -6.5531 43 1 7.8696 -4.6705 -7.6275 44 1 8.6705 -5.6077 -6.3436 45 1 7.3521 -7.6085 -6.9803 46 1 6.5508 -6.6719 -8.2644 47 1 7.5263 -9.8095 -9.9276 48 1 5.5110 -2.1717 -1.6859 49 1 4.2917 -1.8530 -2.9575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319235400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:31 Heat of formation + Delta-G solvation = -160.487033 kcal Electronic energy + Delta-G solvation = -25599.142475 eV Core-core repulsion = 21752.984736 eV Total energy + Delta-G solvation = -3846.157739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37189 -39.64047 -38.85901 -37.83238 -36.92496 -35.21648 -33.76288 -32.62249 -31.22596 -30.06331 -28.67295 -27.20676 -26.56098 -24.82842 -23.84013 -23.43609 -22.29904 -21.40126 -20.89582 -19.10351 -18.48946 -18.06658 -17.64810 -17.47372 -17.03184 -16.65947 -16.43329 -16.35373 -16.14992 -15.97334 -15.50135 -15.27578 -14.64299 -14.49796 -14.26019 -14.02108 -13.96178 -13.70946 -13.51838 -13.41191 -13.04450 -12.81225 -12.70212 -12.55019 -12.40406 -12.32178 -12.29654 -12.03258 -11.76417 -11.67600 -11.64890 -11.59967 -11.32420 -11.16044 -10.64753 -10.53919 -10.51184 -10.27458 -9.52992 -8.18112 -6.30111 1.42289 1.45942 1.53120 1.55565 2.06390 2.42941 2.65738 2.88635 3.04330 3.15320 3.57387 3.59926 3.91579 4.11755 4.15013 4.21245 4.24386 4.26297 4.36016 4.37606 4.47355 4.49895 4.54504 4.54982 4.58914 4.61990 4.66877 4.73601 4.81239 4.85297 4.85970 4.93222 4.94312 4.97113 5.08123 5.15869 5.26212 5.35184 5.44770 5.53492 5.70777 5.84477 6.01590 6.19778 6.22883 6.35488 6.86466 6.95383 7.39326 7.49919 8.93861 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.001794 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.540686 B =15608.065140 C =16550.633817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.055 3.945 4 C 0.059 3.941 5 O -0.410 6.410 6 C 0.074 3.926 7 C -0.091 4.091 8 H 0.087 0.913 9 C -0.106 4.106 10 C 0.088 3.912 11 N -0.639 5.639 12 C 0.710 3.290 13 O -0.643 6.643 14 N -0.726 5.726 15 C 0.149 3.851 16 C -0.098 4.098 17 C 0.023 3.977 18 C -0.542 4.542 19 H 0.068 0.932 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.131 3.869 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.411 0.589 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.069 0.931 45 H -0.008 1.008 46 H -0.008 1.008 47 H 0.263 0.737 48 H 0.063 0.937 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 29.646 21.844 36.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.022 4.022 4 C -0.017 4.017 5 O -0.331 6.331 6 C -0.002 4.002 7 C -0.110 4.110 8 H 0.105 0.895 9 C -0.144 4.144 10 C -0.034 4.034 11 N -0.377 5.377 12 C 0.412 3.588 13 O -0.525 6.525 14 N -0.382 5.382 15 C 0.024 3.976 16 C -0.136 4.136 17 C -0.015 4.015 18 C -0.580 4.580 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.190 1.190 26 C 0.008 3.992 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.247 0.753 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.932 28.750 21.722 36.247 hybrid contribution 0.256 -0.533 -0.652 0.880 sum -3.676 28.217 21.070 35.407 Atomic orbital electron populations 1.22876 0.79843 1.03381 1.00885 1.87937 1.21203 1.29109 1.95597 1.22791 0.92660 0.84793 1.01916 1.22705 0.93414 0.98733 0.86836 1.87954 1.23261 1.82710 1.39134 1.22510 0.81141 1.00702 0.95861 1.22299 0.97447 0.92713 0.98547 0.89457 1.22626 0.93202 0.97920 1.00646 1.22346 0.86947 0.92441 1.01638 1.47639 1.23583 1.23447 1.43061 1.15738 0.83128 0.80537 0.79430 1.90883 1.29165 1.61056 1.71439 1.45012 1.22921 1.27577 1.42688 1.21109 0.98546 0.84518 0.93400 1.21580 0.96427 0.98691 0.96918 1.18948 0.95833 0.92490 0.94201 1.21648 1.05264 1.08569 1.22500 0.91373 1.26055 0.98937 0.96062 0.99163 1.70116 1.31947 1.14394 1.41094 0.85431 0.79052 0.77514 0.78609 1.18952 1.21213 1.18986 1.22119 0.93472 0.93042 0.90584 0.93630 0.89664 0.92298 0.89359 0.92594 0.88870 0.92489 0.89781 0.92296 0.86712 0.88447 0.90349 0.89991 0.75277 0.93602 0.93669 0.91267 0.91225 0.98957 0.98991 0.92832 0.91909 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.41 10.67 -144.34 -1.54 -9.95 16 3 C 0.05 0.70 6.32 71.98 0.45 1.16 16 4 C 0.06 0.70 6.32 71.98 0.45 1.16 16 5 O -0.41 -7.33 10.27 -144.34 -1.48 -8.81 16 6 C 0.07 0.86 5.39 71.98 0.39 1.25 16 7 C -0.09 -1.31 3.30 -9.40 -0.03 -1.34 16 8 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 9 C -0.11 -0.90 6.42 31.78 0.20 -0.70 16 10 C 0.09 1.30 6.15 86.73 0.53 1.83 16 11 N -0.64 -16.51 3.33 -829.76 -2.76 -19.27 16 12 C 0.71 25.14 8.49 179.05 1.52 26.66 16 13 O -0.64 -29.53 16.60 -3.97 -0.07 -29.60 16 14 N -0.73 -23.11 5.52 -478.53 -2.64 -25.75 16 15 C 0.15 5.77 5.67 86.38 0.49 6.26 16 16 C -0.10 -3.94 5.27 30.60 0.16 -3.78 16 17 C 0.02 1.23 4.97 29.85 0.15 1.38 16 18 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 19 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 20 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 21 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 22 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 C 0.13 3.14 6.34 86.86 0.55 3.69 16 27 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.63 7.96 -2.39 -0.02 0.61 16 36 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.10 0.55 8.04 -2.39 -0.02 0.53 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.41 10.02 7.46 -92.71 -0.69 9.33 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 47 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.06 1.49 7.91 -2.39 -0.02 1.47 16 49 H 0.05 1.43 8.04 -2.39 -0.02 1.41 16 Total: -1.00 -82.24 402.75 0.85 -81.39 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.21 Total: 14.59 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.82 Total: 8.93 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -5.11 Total: -102.75 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -3.09 Total: -48.36 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -82.24 0.85 -81.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319235400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.102 kcal (2) G-P(sol) polarization free energy of solvation -82.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds