Wall clock time and date at job start Tue Mar 31 2020 10:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99885 * 2 1 4 4 C 1.52998 * 109.47101 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47489 * 65.00074 * 4 3 2 6 6 C 1.42896 * 114.00291 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47073 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.88902 * 57.42958 * 7 6 5 9 9 C 1.55156 * 111.00798 * 293.54880 * 7 6 5 10 10 C 1.54326 * 102.94554 * 206.38711 * 9 7 6 11 11 N 1.47020 * 107.26813 * 22.18691 * 10 9 7 12 12 C 1.34777 * 125.64679 * 181.02632 * 11 10 9 13 13 O 1.21282 * 120.00142 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99986 * 0.02562 * 12 11 10 15 15 H 1.09001 * 109.47087 * 40.00373 * 14 12 11 16 16 N 1.46905 * 109.47121 * 160.00176 * 14 12 11 17 17 C 1.52998 * 109.47064 * 280.00094 * 14 12 11 18 18 C 1.53004 * 109.47139 * 174.99796 * 17 14 12 19 19 C 1.50698 * 109.47137 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00123 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00122 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47051 * 60.00237 * 23 21 19 25 25 H 1.48502 * 109.46995 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46717 * 299.99835 * 23 21 19 27 27 C 1.47421 * 108.70856 * 1.29048 * 11 10 9 28 28 H 1.09001 * 109.47301 * 60.00017 * 1 2 3 29 29 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47407 * 300.00412 * 1 2 3 31 31 H 1.08998 * 109.47243 * 60.00311 * 3 2 1 32 32 H 1.09004 * 109.47250 * 300.00082 * 3 2 1 33 33 H 1.08998 * 109.47268 * 304.99953 * 4 3 2 34 34 H 1.09001 * 109.47426 * 184.99919 * 4 3 2 35 35 H 1.08998 * 109.47241 * 59.99546 * 6 5 4 36 36 H 1.09000 * 109.46858 * 299.99764 * 6 5 4 37 37 H 1.09003 * 110.72277 * 88.01633 * 9 7 6 38 38 H 1.08998 * 110.71952 * 324.74638 * 9 7 6 39 39 H 1.09001 * 109.87571 * 262.77358 * 10 9 7 40 40 H 1.08997 * 110.01362 * 141.67909 * 10 9 7 41 41 H 1.00901 * 110.99869 * 60.00289 * 16 14 12 42 42 H 1.00896 * 110.99543 * 183.95412 * 16 14 12 43 43 H 1.08995 * 109.47368 * 294.99520 * 17 14 12 44 44 H 1.09001 * 109.47446 * 54.99927 * 17 14 12 45 45 H 1.08994 * 109.47287 * 300.00153 * 18 17 14 46 46 H 1.09004 * 109.46568 * 60.00209 * 18 17 14 47 47 H 0.96998 * 120.00540 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.36718 * 94.47548 * 27 11 10 49 49 H 1.09001 * 110.36944 * 216.80366 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4187 -1.3215 7 6 5.7266 -0.2359 -2.6607 8 1 5.3433 0.3554 -3.4924 9 6 5.1938 -1.6919 -2.7215 10 6 6.1539 -2.3699 -3.7216 11 7 7.3907 -1.5755 -3.7462 12 6 8.4712 -1.8279 -4.5113 13 8 9.4411 -1.1023 -4.4493 14 6 8.4742 -3.0117 -5.4440 15 1 7.4954 -3.1063 -5.9141 16 7 9.4980 -2.8167 -6.4793 17 6 8.7850 -4.2836 -4.6525 18 6 8.6656 -5.4994 -5.5737 19 6 8.9724 -6.7522 -4.7944 20 1 9.2266 -6.6878 -3.7467 21 6 8.9285 -7.9807 -5.4188 22 7 8.6193 -8.0592 -6.6947 23 14 9.3080 -9.5337 -4.4525 24 1 8.3440 -9.6668 -3.3309 25 1 9.1922 -10.7137 -5.3467 26 1 10.6889 -9.4552 -3.9119 27 6 7.2560 -0.4610 -2.7908 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.7354 -0.2135 -0.5069 36 1 5.8637 1.3946 -1.2592 37 1 4.1700 -1.7127 -3.0950 38 1 5.2580 -2.1672 -1.7427 39 1 5.7039 -2.3862 -4.7143 40 1 6.3730 -3.3872 -3.3973 41 1 10.4151 -2.7262 -6.0685 42 1 9.4766 -3.5662 -7.1545 43 1 9.7987 -4.2264 -4.2562 44 1 8.0778 -4.3810 -3.8289 45 1 7.6520 -5.5568 -5.9702 46 1 9.3730 -5.4020 -6.3973 47 1 8.5888 -8.9233 -7.1342 48 1 7.6849 -0.7339 -1.8266 49 1 7.7389 0.4345 -3.1820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325762781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:22 Heat of formation + Delta-G solvation = -139.546821 kcal Electronic energy + Delta-G solvation = -26347.910435 eV Core-core repulsion = 22502.660732 eV Total energy + Delta-G solvation = -3845.249703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09909 -38.86199 -37.94600 -36.95397 -35.41563 -32.85204 -32.52380 -30.48514 -29.86157 -29.44775 -27.13298 -26.57784 -25.34245 -23.77788 -22.98688 -22.56132 -20.66721 -20.30616 -18.92955 -17.47886 -17.34199 -17.05106 -16.53247 -16.24979 -15.78414 -15.54227 -15.43371 -15.17091 -14.57684 -14.41752 -14.17091 -13.82466 -13.67380 -13.55083 -13.26390 -13.02729 -12.70811 -12.51788 -12.44407 -12.17676 -11.99900 -11.71909 -11.62588 -11.60184 -11.24963 -11.08353 -10.93406 -10.88305 -10.79652 -10.68492 -10.08649 -9.93828 -9.91226 -9.87374 -9.26893 -9.18411 -8.52669 -8.41703 -8.14965 -6.06655 -4.09784 2.93251 2.99388 3.29835 3.33798 3.34535 3.37066 3.39179 4.33933 4.40983 4.46421 4.57930 4.65253 4.76652 4.86803 4.94455 4.97814 5.03117 5.05193 5.11579 5.15602 5.21425 5.24460 5.25925 5.29454 5.33096 5.34532 5.42605 5.59477 5.66952 5.79924 5.80180 5.85826 5.96472 6.11141 6.33073 6.39050 6.57077 6.72076 6.88690 6.90114 7.46670 7.54048 7.64171 7.72467 7.90285 7.94233 8.33025 8.46347 8.95839 9.54891 11.04204 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.002470 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.663269 B =11332.183515 C =12880.106321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.376 6.376 6 C 0.074 3.926 7 C -0.100 4.100 8 H 0.093 0.907 9 C -0.118 4.118 10 C 0.094 3.906 11 N -0.621 5.621 12 C 0.542 3.458 13 O -0.540 6.540 14 C 0.079 3.921 15 H 0.096 0.904 16 N -0.831 5.831 17 C -0.137 4.137 18 C 0.026 3.974 19 C -0.523 4.523 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.116 3.884 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.345 0.655 42 H 0.354 0.646 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.262 0.738 48 H 0.066 0.934 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 19.697 12.948 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.295 6.295 6 C -0.003 4.003 7 C -0.119 4.119 8 H 0.111 0.889 9 C -0.156 4.156 10 C -0.029 4.029 11 N -0.357 5.357 12 C 0.332 3.668 13 O -0.416 6.416 14 C -0.036 4.036 15 H 0.114 0.886 16 N -0.363 5.363 17 C -0.177 4.177 18 C -0.012 4.012 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.007 4.007 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.146 20.376 12.427 27.744 hybrid contribution 0.429 -1.554 1.120 1.963 sum -13.717 18.822 13.547 26.943 Atomic orbital electron populations 1.22754 0.81013 1.03006 0.99799 1.87979 1.19620 1.27153 1.95352 1.22557 0.92411 0.85628 1.00807 1.22503 0.93337 0.97520 0.87966 1.87944 1.21852 1.82014 1.37714 1.22366 0.81663 0.99321 0.96930 1.22345 0.94920 0.97169 0.97495 0.88901 1.22620 0.99292 0.93869 0.99780 1.22196 0.84421 0.95963 1.00304 1.48421 1.16133 1.29289 1.41847 1.20615 0.80729 0.85950 0.79544 1.90631 1.33564 1.49915 1.67472 1.21439 0.98287 0.91621 0.92251 0.88630 1.58748 1.08585 1.52035 1.16958 1.22379 1.01005 0.94562 0.99746 1.19091 0.97329 0.90508 0.94230 1.21137 1.47355 0.91334 0.96336 0.92803 1.25012 0.95189 0.99184 0.94926 1.69940 1.48459 1.25076 1.09734 0.86644 0.78943 0.82519 0.79829 1.20210 1.21223 1.20243 1.22066 0.94449 0.90909 0.93320 0.93996 0.89455 0.94256 0.91930 0.92384 0.92366 0.91828 0.92767 0.93010 0.89476 0.90438 0.91063 0.90327 0.84171 0.83039 0.92745 0.92485 0.96329 0.96413 0.92831 0.91537 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.61 10.67 -40.07 -0.43 -4.04 16 3 C 0.06 0.43 6.32 37.16 0.23 0.67 16 4 C 0.06 0.46 6.32 37.16 0.23 0.69 16 5 O -0.38 -3.66 10.16 -40.07 -0.41 -4.07 16 6 C 0.07 0.62 5.38 37.15 0.20 0.82 16 7 C -0.10 -0.98 3.34 -88.35 -0.29 -1.27 16 8 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 9 C -0.12 -1.20 6.28 -24.90 -0.16 -1.36 16 10 C 0.09 1.17 6.19 -3.06 -0.02 1.15 16 11 N -0.62 -9.05 3.32 -170.38 -0.57 -9.62 16 12 C 0.54 9.72 7.10 -10.99 -0.08 9.64 16 13 O -0.54 -11.18 16.50 5.56 0.09 -11.09 16 14 C 0.08 1.42 2.62 -68.86 -0.18 1.24 16 15 H 0.10 1.65 7.46 -51.93 -0.39 1.27 16 16 N -0.83 -15.01 8.94 -5.65 -0.05 -15.06 16 17 C -0.14 -2.78 4.77 -26.73 -0.13 -2.91 16 18 C 0.03 0.63 4.74 -27.88 -0.13 0.50 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 23 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.12 1.38 6.38 -2.41 -0.02 1.36 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 39 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 40 H 0.08 1.04 6.75 -51.93 -0.35 0.69 16 41 H 0.35 6.29 8.58 -39.29 -0.34 5.95 16 42 H 0.35 6.34 7.55 -39.29 -0.30 6.04 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.12 6.65 -51.93 -0.35 0.77 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 49 H 0.08 0.97 8.03 -51.93 -0.42 0.56 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -33.42 396.42 -8.07 -41.49 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.77 Total: 6.87 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.37 Total: -1.41 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.12 Total: -50.13 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.74 Total: -19.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.42 -8.07 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325762781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.059 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds