Wall clock time and date at job start Tue Mar 31 2020 10:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99885 * 2 1 4 4 C 1.52998 * 109.47101 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47489 * 65.00074 * 4 3 2 6 6 C 1.42896 * 114.00291 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47073 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.88902 * 57.42958 * 7 6 5 9 9 C 1.55156 * 111.00798 * 293.54880 * 7 6 5 10 10 C 1.54326 * 102.94554 * 206.38711 * 9 7 6 11 11 N 1.47020 * 107.26813 * 22.18691 * 10 9 7 12 12 C 1.34777 * 125.64679 * 181.02632 * 11 10 9 13 13 O 1.21282 * 120.00142 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99986 * 0.02562 * 12 11 10 15 15 H 1.09001 * 109.47087 * 40.00373 * 14 12 11 16 16 N 1.46905 * 109.47121 * 160.00176 * 14 12 11 17 17 C 1.52998 * 109.47064 * 280.00094 * 14 12 11 18 18 C 1.53004 * 109.47139 * 174.99796 * 17 14 12 19 19 C 1.50698 * 109.47137 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00123 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00122 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47051 * 60.00237 * 23 21 19 25 25 H 1.48502 * 109.46995 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46717 * 299.99835 * 23 21 19 27 27 C 1.47421 * 108.70856 * 1.29048 * 11 10 9 28 28 H 1.09001 * 109.47301 * 60.00017 * 1 2 3 29 29 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47407 * 300.00412 * 1 2 3 31 31 H 1.08998 * 109.47243 * 60.00311 * 3 2 1 32 32 H 1.09004 * 109.47250 * 300.00082 * 3 2 1 33 33 H 1.08998 * 109.47268 * 304.99953 * 4 3 2 34 34 H 1.09001 * 109.47426 * 184.99919 * 4 3 2 35 35 H 1.08998 * 109.47241 * 59.99546 * 6 5 4 36 36 H 1.09000 * 109.46858 * 299.99764 * 6 5 4 37 37 H 1.09003 * 110.72277 * 88.01633 * 9 7 6 38 38 H 1.08998 * 110.71952 * 324.74638 * 9 7 6 39 39 H 1.09001 * 109.87571 * 262.77358 * 10 9 7 40 40 H 1.08997 * 110.01362 * 141.67909 * 10 9 7 41 41 H 1.00901 * 110.99869 * 60.00289 * 16 14 12 42 42 H 1.00896 * 110.99543 * 183.95412 * 16 14 12 43 43 H 1.08995 * 109.47368 * 294.99520 * 17 14 12 44 44 H 1.09001 * 109.47446 * 54.99927 * 17 14 12 45 45 H 1.08994 * 109.47287 * 300.00153 * 18 17 14 46 46 H 1.09004 * 109.46568 * 60.00209 * 18 17 14 47 47 H 0.96998 * 120.00540 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.36718 * 94.47548 * 27 11 10 49 49 H 1.09001 * 110.36944 * 216.80366 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4187 -1.3215 7 6 5.7266 -0.2359 -2.6607 8 1 5.3433 0.3554 -3.4924 9 6 5.1938 -1.6919 -2.7215 10 6 6.1539 -2.3699 -3.7216 11 7 7.3907 -1.5755 -3.7462 12 6 8.4712 -1.8279 -4.5113 13 8 9.4411 -1.1023 -4.4493 14 6 8.4742 -3.0117 -5.4440 15 1 7.4954 -3.1063 -5.9141 16 7 9.4980 -2.8167 -6.4793 17 6 8.7850 -4.2836 -4.6525 18 6 8.6656 -5.4994 -5.5737 19 6 8.9724 -6.7522 -4.7944 20 1 9.2266 -6.6878 -3.7467 21 6 8.9285 -7.9807 -5.4188 22 7 8.6193 -8.0592 -6.6947 23 14 9.3080 -9.5337 -4.4525 24 1 8.3440 -9.6668 -3.3309 25 1 9.1922 -10.7137 -5.3467 26 1 10.6889 -9.4552 -3.9119 27 6 7.2560 -0.4610 -2.7908 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.7354 -0.2135 -0.5069 36 1 5.8637 1.3946 -1.2592 37 1 4.1700 -1.7127 -3.0950 38 1 5.2580 -2.1672 -1.7427 39 1 5.7039 -2.3862 -4.7143 40 1 6.3730 -3.3872 -3.3973 41 1 10.4151 -2.7262 -6.0685 42 1 9.4766 -3.5662 -7.1545 43 1 9.7987 -4.2264 -4.2562 44 1 8.0778 -4.3810 -3.8289 45 1 7.6520 -5.5568 -5.9702 46 1 9.3730 -5.4020 -6.3973 47 1 8.5888 -8.9233 -7.1342 48 1 7.6849 -0.7339 -1.8266 49 1 7.7389 0.4345 -3.1820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325762781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:21 Heat of formation + Delta-G solvation = -163.622094 kcal Electronic energy + Delta-G solvation = -26348.954417 eV Core-core repulsion = 22502.660732 eV Total energy + Delta-G solvation = -3846.293686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32459 -39.60232 -38.79606 -37.78746 -37.06865 -34.85325 -33.50486 -31.71065 -31.13871 -30.36890 -28.50872 -27.19336 -26.68031 -25.16188 -23.91814 -23.41230 -22.18166 -21.36888 -20.22276 -18.86674 -18.22154 -18.08606 -17.60790 -17.38393 -16.69607 -16.46758 -16.36578 -16.20943 -16.08749 -15.80654 -15.39284 -15.25429 -14.70797 -14.51739 -14.48553 -14.20640 -13.88301 -13.76402 -13.55373 -13.42780 -13.07981 -12.91477 -12.79648 -12.67223 -12.54521 -12.29997 -12.25403 -12.01897 -11.84009 -11.75187 -11.64723 -11.58310 -11.32567 -10.78366 -10.61128 -10.55777 -10.50826 -9.76783 -9.63389 -8.21286 -6.31894 1.39844 1.41569 1.49396 1.54057 1.85349 2.39963 2.65362 2.90913 3.12055 3.37615 3.59014 3.71407 3.77060 3.92273 4.06578 4.13792 4.20930 4.24746 4.25813 4.31848 4.36601 4.48527 4.52502 4.54067 4.58772 4.60774 4.62249 4.64006 4.73325 4.81295 4.82559 4.87736 4.89828 4.97075 5.07416 5.09814 5.25296 5.35033 5.45463 5.63886 5.79616 6.03455 6.20383 6.20553 6.33933 6.41498 6.45474 6.82733 7.09094 7.37016 8.89322 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.002470 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.663269 B =11332.183515 C =12880.106321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.058 3.942 4 C 0.058 3.942 5 O -0.398 6.398 6 C 0.077 3.923 7 C -0.088 4.088 8 H 0.092 0.908 9 C -0.109 4.109 10 C 0.089 3.911 11 N -0.618 5.618 12 C 0.540 3.460 13 O -0.573 6.573 14 C 0.086 3.914 15 H 0.104 0.896 16 N -0.830 5.830 17 C -0.119 4.119 18 C 0.033 3.967 19 C -0.545 4.545 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.271 1.271 27 C 0.112 3.888 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.344 0.656 42 H 0.354 0.646 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.002 0.998 46 H 0.003 0.997 47 H 0.264 0.736 48 H 0.076 0.924 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 20.301 14.638 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.018 4.018 4 C -0.018 4.018 5 O -0.318 6.318 6 C 0.000 4.000 7 C -0.107 4.107 8 H 0.110 0.890 9 C -0.147 4.147 10 C -0.033 4.033 11 N -0.351 5.351 12 C 0.329 3.671 13 O -0.452 6.452 14 C -0.029 4.029 15 H 0.122 0.878 16 N -0.361 5.361 17 C -0.159 4.159 18 C -0.005 4.005 19 C -0.583 4.583 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.784 3.216 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.196 1.196 27 C -0.011 4.011 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.020 0.980 46 H 0.021 0.979 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.138 20.995 14.145 29.496 hybrid contribution 0.664 -1.708 0.600 1.928 sum -14.474 19.288 14.744 28.265 Atomic orbital electron populations 1.22881 0.79805 1.03516 1.00791 1.87925 1.21176 1.28769 1.95589 1.22728 0.92226 0.84957 1.01906 1.22709 0.93661 0.98534 0.86942 1.87904 1.22268 1.82562 1.39050 1.22337 0.81557 1.00167 0.95927 1.22237 0.92992 0.96921 0.98599 0.88989 1.22578 0.98916 0.93932 0.99263 1.22357 0.84005 0.95557 1.01422 1.48453 1.15740 1.29927 1.41030 1.20429 0.81190 0.85619 0.79880 1.90612 1.34940 1.50973 1.68661 1.21345 0.98585 0.90911 0.92105 0.87825 1.58759 1.08624 1.51836 1.16913 1.22118 1.00595 0.94017 0.99188 1.18942 0.95669 0.91586 0.94253 1.21561 1.47293 0.92741 0.96688 0.92761 1.25874 0.94968 1.02587 0.95896 1.70055 1.49355 1.25953 1.11239 0.85588 0.79009 0.78413 0.78576 1.19185 1.20767 1.19629 1.22243 0.96169 0.89764 0.92876 0.93538 0.89300 0.92696 0.89607 0.92417 0.92427 0.89543 0.92230 0.91381 0.88759 0.89997 0.90505 0.91122 0.84266 0.83136 0.93745 0.91770 0.98010 0.97906 0.92695 0.90610 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.35 10.67 -144.35 -1.54 -8.89 16 3 C 0.06 0.70 6.32 71.98 0.45 1.15 16 4 C 0.06 0.71 6.32 71.98 0.45 1.16 16 5 O -0.40 -6.97 10.16 -144.35 -1.47 -8.44 16 6 C 0.08 1.12 5.38 71.98 0.39 1.51 16 7 C -0.09 -1.56 3.34 -9.33 -0.03 -1.59 16 8 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 9 C -0.11 -2.05 6.28 31.78 0.20 -1.85 16 10 C 0.09 2.11 6.19 86.73 0.54 2.64 16 11 N -0.62 -17.44 3.32 -811.34 -2.70 -20.14 16 12 C 0.54 19.16 7.10 87.66 0.62 19.78 16 13 O -0.57 -23.68 16.50 -3.04 -0.05 -23.73 16 14 C 0.09 3.09 2.62 44.17 0.12 3.20 16 15 H 0.10 3.56 7.46 -2.39 -0.02 3.54 16 16 N -0.83 -30.21 8.94 -171.79 -1.54 -31.74 16 17 C -0.12 -4.86 4.77 30.59 0.15 -4.72 16 18 C 0.03 1.63 4.74 29.85 0.14 1.77 16 19 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 20 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 23 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.11 2.50 6.38 86.93 0.55 3.06 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.49 8.01 -2.39 -0.02 1.47 16 39 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 40 H 0.07 1.81 6.75 -2.39 -0.02 1.80 16 41 H 0.34 12.69 8.58 -89.69 -0.77 11.92 16 42 H 0.35 12.87 7.55 -89.70 -0.68 12.19 16 43 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 2.50 6.65 -2.39 -0.02 2.48 16 45 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.00 0.14 6.87 -2.39 -0.02 0.12 16 47 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.08 1.58 8.04 -2.38 -0.02 1.57 16 49 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -70.88 396.42 0.03 -70.84 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.51 Total: 32.40 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.53 Total: -1.58 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.95 Total: -106.30 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -3.06 Total: -41.05 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.88 0.03 -70.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325762781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.777 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds