Wall clock time and date at job start Tue Mar 31 2020 10:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.08993 * 110.88922 * 308.87880 * 7 6 5 9 9 C 1.55160 * 111.00303 * 72.81076 * 7 6 5 10 10 C 1.54326 * 102.94148 * 153.57341 * 9 7 6 11 11 N 1.47016 * 107.27153 * 337.80407 * 10 9 7 12 12 C 1.34781 * 125.65044 * 178.90673 * 11 10 9 13 13 O 1.21276 * 120.00314 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99815 * 0.04164 * 12 11 10 15 15 H 1.09002 * 109.46949 * 39.99719 * 14 12 11 16 16 N 1.46894 * 109.47470 * 160.00058 * 14 12 11 17 17 C 1.53002 * 109.46857 * 280.00005 * 14 12 11 18 18 C 1.53005 * 109.46855 * 174.99854 * 17 14 12 19 19 C 1.50696 * 109.46974 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00474 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00221 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00215 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47005 * 60.00266 * 23 21 19 25 25 H 1.48503 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47503 * 299.99802 * 23 21 19 27 27 C 1.47421 * 108.70466 * 358.93998 * 11 10 9 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 34 34 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 35 35 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 36 36 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 37 37 H 1.08998 * 110.71677 * 271.93411 * 9 7 6 38 38 H 1.08998 * 110.72174 * 35.20936 * 9 7 6 39 39 H 1.08997 * 109.87914 * 218.38558 * 10 9 7 40 40 H 1.09008 * 110.01177 * 97.29404 * 10 9 7 41 41 H 1.00904 * 110.99985 * 59.99393 * 16 14 12 42 42 H 1.00894 * 111.00599 * 183.95791 * 16 14 12 43 43 H 1.08997 * 109.47193 * 294.99828 * 17 14 12 44 44 H 1.08998 * 109.47668 * 55.00324 * 17 14 12 45 45 H 1.08997 * 109.47199 * 299.99971 * 18 17 14 46 46 H 1.09004 * 109.46925 * 60.00088 * 18 17 14 47 47 H 0.97005 * 119.99779 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.36829 * 265.29072 * 27 11 10 49 49 H 1.09010 * 110.36832 * 142.96566 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.1343 -1.1361 -2.8199 9 6 5.5316 0.7662 -3.8364 10 6 6.5124 0.2394 -4.9052 11 7 7.5283 -0.5625 -4.2080 12 6 8.5528 -1.2138 -4.7935 13 8 9.3341 -1.8482 -4.1168 14 6 8.7277 -1.1534 -6.2891 15 1 8.5107 -0.1445 -6.6398 16 7 10.1114 -1.5051 -6.6350 17 6 7.7686 -2.1422 -6.9550 18 6 7.8564 -1.9926 -8.4752 19 6 6.9122 -2.9669 -9.1311 20 1 6.3100 -3.6271 -8.5245 21 6 6.8178 -3.0163 -10.5058 22 7 7.5514 -2.2127 -11.2446 23 14 5.6479 -4.2244 -11.3189 24 1 4.2591 -3.9445 -10.8738 25 1 5.7330 -4.0792 -12.7943 26 1 6.0211 -5.6096 -10.9350 27 6 7.2405 -0.5370 -2.7624 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9784 2.1766 0.0889 34 1 3.8514 0.5683 0.8410 35 1 5.8621 1.3963 -1.2631 36 1 5.7357 -0.2119 -0.5109 37 1 4.5063 0.7349 -4.2050 38 1 5.8017 1.7767 -3.5298 39 1 6.9876 1.0763 -5.4168 40 1 5.9803 -0.3817 -5.6260 41 1 10.3372 -2.4367 -6.3201 42 1 10.2718 -1.4096 -7.6265 43 1 8.0419 -3.1591 -6.6736 44 1 6.7494 -1.9362 -6.6280 45 1 7.5831 -0.9757 -8.7566 46 1 8.8756 -2.1987 -8.8023 47 1 7.4853 -2.2477 -12.2117 48 1 7.8171 0.2489 -2.2746 49 1 7.4626 -1.5055 -2.3141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325762787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:27 Heat of formation + Delta-G solvation = -139.642214 kcal Electronic energy + Delta-G solvation = -26345.382986 eV Core-core repulsion = 22500.129146 eV Total energy + Delta-G solvation = -3845.253840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11111 -38.85648 -37.94694 -36.96310 -35.42133 -32.85508 -32.53137 -30.49326 -29.86567 -29.46178 -27.13435 -26.57373 -25.34761 -23.77150 -22.97798 -22.58691 -20.59784 -20.39828 -18.95853 -17.41799 -17.35270 -17.17123 -16.38636 -16.20021 -15.75910 -15.59110 -15.38914 -15.34483 -14.49516 -14.47863 -14.21465 -13.84393 -13.64052 -13.50531 -13.20978 -12.89479 -12.82284 -12.67262 -12.47964 -12.06513 -12.03332 -11.82978 -11.66287 -11.44716 -11.26403 -11.08903 -10.97796 -10.86650 -10.81236 -10.68580 -10.08029 -9.93913 -9.90077 -9.88167 -9.26916 -9.18662 -8.53786 -8.41775 -8.15341 -6.06839 -4.09850 2.92870 2.98934 3.30039 3.34302 3.34634 3.37418 3.39865 4.31585 4.41068 4.45011 4.57248 4.67517 4.75887 4.89522 4.94162 4.97774 5.02986 5.05838 5.11190 5.13425 5.20575 5.23134 5.27273 5.29342 5.33424 5.34765 5.43131 5.57308 5.66058 5.77899 5.78729 5.80880 5.95409 6.09278 6.31822 6.39202 6.56988 6.72878 6.89867 6.90103 7.46110 7.53796 7.63752 7.71760 7.90194 7.93702 8.32988 8.45767 8.95805 9.54869 11.04019 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.002589 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.175089 B =10814.142866 C =12679.249232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.376 6.376 6 C 0.075 3.925 7 C -0.101 4.101 8 H 0.096 0.904 9 C -0.120 4.120 10 C 0.094 3.906 11 N -0.621 5.621 12 C 0.542 3.458 13 O -0.539 6.539 14 C 0.079 3.921 15 H 0.095 0.905 16 N -0.831 5.831 17 C -0.137 4.137 18 C 0.026 3.974 19 C -0.523 4.523 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.116 3.884 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.345 0.655 42 H 0.354 0.646 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.262 0.738 48 H 0.066 0.934 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 10.808 22.705 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.295 6.295 6 C -0.002 4.002 7 C -0.121 4.121 8 H 0.114 0.886 9 C -0.158 4.158 10 C -0.029 4.029 11 N -0.357 5.357 12 C 0.332 3.668 13 O -0.415 6.415 14 C -0.036 4.036 15 H 0.113 0.887 16 N -0.363 5.363 17 C -0.177 4.177 18 C -0.011 4.011 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.007 4.007 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.112 10.861 23.142 27.139 hybrid contribution -1.251 -0.988 -0.929 1.845 sum -10.363 9.872 22.213 26.425 Atomic orbital electron populations 1.22756 0.80994 1.02976 0.99851 1.87974 1.19650 1.27218 1.95363 1.22565 0.92405 0.85603 1.00868 1.22499 0.93369 0.97531 0.87908 1.87960 1.21847 1.82042 1.37658 1.22362 0.81681 0.99258 0.96884 1.22323 0.95851 1.00015 0.93874 0.88565 1.22655 1.00025 0.98519 0.94553 1.22183 0.89575 0.95351 0.95755 1.48416 1.28499 1.51510 1.07289 1.20619 0.78527 0.77174 0.90523 1.90632 1.43139 1.42024 1.65695 1.21437 0.90952 1.01561 0.89628 0.88663 1.58742 1.20791 1.34371 1.22444 1.22384 0.97838 0.97359 1.00130 1.19090 0.97347 0.97406 0.87297 1.21142 1.23436 1.20160 0.91419 0.92782 1.25011 0.95914 0.95866 0.97515 1.69943 1.40016 1.37934 1.05344 0.86643 0.81440 0.81640 0.78210 1.20196 1.21231 1.20233 1.22013 0.93608 1.02258 0.82814 0.89510 0.94256 0.93908 0.91915 0.92291 0.91786 0.92447 0.92945 0.92869 0.89453 0.90686 0.91085 0.90252 0.84148 0.83036 0.92721 0.92456 0.96352 0.96421 0.92842 0.91613 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.73 10.67 -40.09 -0.43 -4.16 16 3 C 0.06 0.44 6.32 37.16 0.23 0.68 16 4 C 0.06 0.46 6.32 37.16 0.23 0.70 16 5 O -0.38 -3.76 10.27 -40.09 -0.41 -4.17 16 6 C 0.08 0.64 5.39 37.16 0.20 0.84 16 7 C -0.10 -1.02 3.30 -88.47 -0.29 -1.31 16 8 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 9 C -0.12 -1.16 6.39 -24.89 -0.16 -1.32 16 10 C 0.09 1.14 6.18 -3.07 -0.02 1.12 16 11 N -0.62 -9.00 3.33 -170.52 -0.57 -9.57 16 12 C 0.54 9.69 7.10 -10.98 -0.08 9.62 16 13 O -0.54 -11.17 16.51 5.56 0.09 -11.08 16 14 C 0.08 1.42 2.62 -68.87 -0.18 1.24 16 15 H 0.10 1.63 7.52 -51.93 -0.39 1.24 16 16 N -0.83 -14.96 8.94 -5.66 -0.05 -15.01 16 17 C -0.14 -2.79 4.77 -26.73 -0.13 -2.91 16 18 C 0.03 0.63 4.74 -27.88 -0.13 0.50 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 20 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.12 1.38 6.38 -2.53 -0.02 1.37 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.37 7.97 -51.93 -0.41 -0.04 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 39 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.08 1.05 6.68 -51.92 -0.35 0.70 16 41 H 0.35 6.28 8.58 -39.29 -0.34 5.95 16 42 H 0.35 6.31 7.55 -39.29 -0.30 6.02 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.13 6.60 -51.93 -0.34 0.78 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 48 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 49 H 0.08 1.01 8.04 -51.92 -0.42 0.60 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -33.54 396.37 -8.07 -41.61 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.76 Total: 6.82 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 0.37 Total: -1.41 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.12 Total: -50.00 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.75 Total: -19.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.54 -8.07 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325762787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.033 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds