Wall clock time and date at job start Tue Mar 31 2020 10:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.08993 * 110.88922 * 308.87880 * 7 6 5 9 9 C 1.55160 * 111.00303 * 72.81076 * 7 6 5 10 10 C 1.54326 * 102.94148 * 153.57341 * 9 7 6 11 11 N 1.47016 * 107.27153 * 337.80407 * 10 9 7 12 12 C 1.34781 * 125.65044 * 178.90673 * 11 10 9 13 13 O 1.21276 * 120.00314 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99815 * 0.04164 * 12 11 10 15 15 H 1.09002 * 109.46949 * 39.99719 * 14 12 11 16 16 N 1.46894 * 109.47470 * 160.00058 * 14 12 11 17 17 C 1.53002 * 109.46857 * 280.00005 * 14 12 11 18 18 C 1.53005 * 109.46855 * 174.99854 * 17 14 12 19 19 C 1.50696 * 109.46974 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00474 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00221 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00215 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47005 * 60.00266 * 23 21 19 25 25 H 1.48503 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47503 * 299.99802 * 23 21 19 27 27 C 1.47421 * 108.70466 * 358.93998 * 11 10 9 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 34 34 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 35 35 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 36 36 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 37 37 H 1.08998 * 110.71677 * 271.93411 * 9 7 6 38 38 H 1.08998 * 110.72174 * 35.20936 * 9 7 6 39 39 H 1.08997 * 109.87914 * 218.38558 * 10 9 7 40 40 H 1.09008 * 110.01177 * 97.29404 * 10 9 7 41 41 H 1.00904 * 110.99985 * 59.99393 * 16 14 12 42 42 H 1.00894 * 111.00599 * 183.95791 * 16 14 12 43 43 H 1.08997 * 109.47193 * 294.99828 * 17 14 12 44 44 H 1.08998 * 109.47668 * 55.00324 * 17 14 12 45 45 H 1.08997 * 109.47199 * 299.99971 * 18 17 14 46 46 H 1.09004 * 109.46925 * 60.00088 * 18 17 14 47 47 H 0.97005 * 119.99779 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.36829 * 265.29072 * 27 11 10 49 49 H 1.09010 * 110.36832 * 142.96566 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.1343 -1.1361 -2.8199 9 6 5.5316 0.7662 -3.8364 10 6 6.5124 0.2394 -4.9052 11 7 7.5283 -0.5625 -4.2080 12 6 8.5528 -1.2138 -4.7935 13 8 9.3341 -1.8482 -4.1168 14 6 8.7277 -1.1534 -6.2891 15 1 8.5107 -0.1445 -6.6398 16 7 10.1114 -1.5051 -6.6350 17 6 7.7686 -2.1422 -6.9550 18 6 7.8564 -1.9926 -8.4752 19 6 6.9122 -2.9669 -9.1311 20 1 6.3100 -3.6271 -8.5245 21 6 6.8178 -3.0163 -10.5058 22 7 7.5514 -2.2127 -11.2446 23 14 5.6479 -4.2244 -11.3189 24 1 4.2591 -3.9445 -10.8738 25 1 5.7330 -4.0792 -12.7943 26 1 6.0211 -5.6096 -10.9350 27 6 7.2405 -0.5370 -2.7624 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9784 2.1766 0.0889 34 1 3.8514 0.5683 0.8410 35 1 5.8621 1.3963 -1.2631 36 1 5.7357 -0.2119 -0.5109 37 1 4.5063 0.7349 -4.2050 38 1 5.8017 1.7767 -3.5298 39 1 6.9876 1.0763 -5.4168 40 1 5.9803 -0.3817 -5.6260 41 1 10.3372 -2.4367 -6.3201 42 1 10.2718 -1.4096 -7.6265 43 1 8.0419 -3.1591 -6.6736 44 1 6.7494 -1.9362 -6.6280 45 1 7.5831 -0.9757 -8.7566 46 1 8.8756 -2.1987 -8.8023 47 1 7.4853 -2.2477 -12.2117 48 1 7.8171 0.2489 -2.2746 49 1 7.4626 -1.5055 -2.3141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325762787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:26 Heat of formation + Delta-G solvation = -163.993762 kcal Electronic energy + Delta-G solvation = -26346.438949 eV Core-core repulsion = 22500.129146 eV Total energy + Delta-G solvation = -3846.309802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32787 -39.60545 -38.80776 -37.79863 -37.07298 -34.85677 -33.51408 -31.71275 -31.15003 -30.36307 -28.51272 -27.20812 -26.68686 -25.15539 -23.90733 -23.42387 -22.15940 -21.41239 -20.24167 -18.85684 -18.20344 -18.08034 -17.74647 -17.15544 -16.85434 -16.42666 -16.32774 -16.26171 -16.10668 -15.78842 -15.53187 -15.10086 -14.77149 -14.53558 -14.42119 -14.27367 -13.88066 -13.63487 -13.52430 -13.44046 -13.20397 -12.95730 -12.80161 -12.67834 -12.54653 -12.39128 -12.15423 -11.96383 -11.83158 -11.75597 -11.72515 -11.56694 -11.32921 -10.78386 -10.62670 -10.56077 -10.50461 -9.76973 -9.62933 -8.21753 -6.32199 1.39532 1.41151 1.48990 1.53973 1.85594 2.39630 2.66371 2.90078 3.11608 3.36818 3.58979 3.70163 3.77763 3.92158 4.07076 4.14387 4.20464 4.25228 4.26557 4.30247 4.38422 4.45291 4.52451 4.53588 4.57861 4.60759 4.62948 4.64551 4.71888 4.79673 4.82787 4.87725 4.89906 4.95537 5.06066 5.10811 5.25273 5.34930 5.45237 5.63624 5.79304 6.03299 6.20139 6.20362 6.34133 6.41745 6.45299 6.82244 7.09197 7.36672 8.88810 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.002589 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.175089 B =10814.142866 C =12679.249232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.057 3.943 4 C 0.058 3.942 5 O -0.401 6.401 6 C 0.079 3.921 7 C -0.093 4.093 8 H 0.079 0.921 9 C -0.109 4.109 10 C 0.087 3.913 11 N -0.618 5.618 12 C 0.539 3.461 13 O -0.573 6.573 14 C 0.086 3.914 15 H 0.106 0.894 16 N -0.829 5.829 17 C -0.120 4.120 18 C 0.033 3.967 19 C -0.546 4.546 20 H 0.053 0.947 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.344 0.656 42 H 0.354 0.646 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.264 0.736 48 H 0.085 0.915 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 11.908 23.851 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.018 4.018 5 O -0.321 6.321 6 C 0.002 3.998 7 C -0.113 4.113 8 H 0.097 0.903 9 C -0.146 4.146 10 C -0.035 4.035 11 N -0.352 5.352 12 C 0.328 3.672 13 O -0.453 6.453 14 C -0.029 4.029 15 H 0.124 0.876 16 N -0.361 5.361 17 C -0.160 4.160 18 C -0.004 4.004 19 C -0.584 4.584 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.565 5.565 23 Si 0.783 3.217 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.009 4.009 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.454 11.987 24.311 29.052 hybrid contribution -0.878 -1.292 -1.256 2.004 sum -11.333 10.695 23.056 27.828 Atomic orbital electron populations 1.22884 0.79790 1.03486 1.00844 1.87922 1.21219 1.28950 1.95604 1.22754 0.92323 0.84868 1.01982 1.22715 0.93609 0.98653 0.86834 1.87919 1.22427 1.82651 1.39073 1.22338 0.81498 1.00274 0.95699 1.22203 0.94033 0.99694 0.95333 0.90302 1.22638 0.99422 0.99283 0.93305 1.22378 0.89530 0.95150 0.96417 1.48453 1.27567 1.50342 1.08819 1.20449 0.79156 0.77412 0.90170 1.90612 1.44734 1.43735 1.66177 1.21343 0.90161 1.01232 0.90130 0.87614 1.58756 1.20734 1.34263 1.22344 1.22123 0.98934 0.97469 0.97438 1.18938 0.95799 0.95768 0.89881 1.21560 1.23992 1.20738 0.92068 0.92894 1.25858 0.97543 0.97619 0.98211 1.70054 1.41409 1.39402 1.05659 0.85599 0.79514 0.79295 0.77247 1.19210 1.20674 1.19712 1.22184 0.95262 1.02343 0.81138 0.89370 0.92541 0.93589 0.89471 0.92398 0.89238 0.92489 0.90798 0.92375 0.89081 0.88488 0.89907 0.91579 0.84311 0.83115 0.93911 0.91881 0.97889 0.97874 0.92676 0.89714 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.74 10.67 -144.34 -1.54 -9.28 16 3 C 0.06 0.71 6.32 71.98 0.45 1.16 16 4 C 0.06 0.72 6.32 71.98 0.45 1.17 16 5 O -0.40 -7.27 10.27 -144.34 -1.48 -8.76 16 6 C 0.08 1.15 5.39 71.98 0.39 1.54 16 7 C -0.09 -1.73 3.30 -9.40 -0.03 -1.76 16 8 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 9 C -0.11 -1.86 6.39 31.78 0.20 -1.66 16 10 C 0.09 2.00 6.18 86.73 0.54 2.53 16 11 N -0.62 -17.33 3.33 -811.79 -2.70 -20.03 16 12 C 0.54 19.13 7.10 87.66 0.62 19.76 16 13 O -0.57 -23.84 16.51 -3.02 -0.05 -23.89 16 14 C 0.09 3.10 2.62 44.17 0.12 3.22 16 15 H 0.11 3.56 7.52 -2.39 -0.02 3.54 16 16 N -0.83 -30.06 8.94 -171.81 -1.54 -31.59 16 17 C -0.12 -4.91 4.77 30.60 0.15 -4.76 16 18 C 0.03 1.66 4.74 29.85 0.14 1.81 16 19 C -0.55 -30.40 9.11 25.60 0.23 -30.16 16 20 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 21 C 0.01 0.36 5.46 84.65 0.46 0.82 16 22 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 23 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 C 0.11 2.54 6.38 86.86 0.55 3.10 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.78 7.97 -2.39 -0.02 0.76 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.28 7.91 -2.39 -0.02 1.26 16 39 H 0.08 1.72 7.94 -2.39 -0.02 1.70 16 40 H 0.07 1.70 6.68 -2.38 -0.02 1.68 16 41 H 0.34 12.70 8.58 -89.69 -0.77 11.93 16 42 H 0.35 12.80 7.55 -89.70 -0.68 12.12 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 2.48 6.60 -2.39 -0.02 2.47 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.00 0.16 6.87 -2.38 -0.02 0.14 16 47 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 48 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 49 H 0.07 1.68 8.04 -2.38 -0.02 1.66 16 Total: -1.00 -71.88 396.37 0.02 -71.86 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.51 Total: 31.84 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.53 Total: -1.68 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.95 Total: -105.89 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -3.07 Total: -41.93 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.88 0.02 -71.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325762787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.136 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds