Wall clock time and date at job start Tue Mar 31 2020 10:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46501 * 120.00163 * 2 1 4 4 C 1.50697 * 109.47002 * 269.99531 * 3 2 1 5 5 H 1.07994 * 119.99843 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99642 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00416 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99782 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47617 * 89.99845 * 8 6 4 10 10 H 1.48503 * 109.47196 * 209.99941 * 8 6 4 11 11 H 1.48501 * 109.46891 * 329.99473 * 8 6 4 12 12 C 1.34776 * 120.00089 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00346 * 180.02562 * 12 2 1 14 14 C 1.50709 * 120.00013 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47136 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47061 * 180.02562 * 15 14 12 17 17 C 1.46905 * 110.99851 * 180.02562 * 16 15 14 18 18 H 1.09001 * 109.47063 * 324.99524 * 17 16 15 19 19 C 1.52997 * 109.47150 * 85.00128 * 17 16 15 20 20 O 1.42898 * 109.47319 * 64.99949 * 19 17 16 21 21 C 1.53001 * 109.46678 * 205.00125 * 17 16 15 22 22 H 1.08998 * 109.52501 * 300.12172 * 21 17 16 23 23 C 1.53178 * 109.52015 * 180.02562 * 21 17 16 24 24 C 1.53179 * 109.03514 * 183.11205 * 23 21 17 25 25 C 1.53089 * 109.16642 * 56.98305 * 24 23 21 26 26 O 1.42908 * 109.41189 * 302.39087 * 25 24 23 27 27 C 1.42899 * 114.09969 * 61.15261 * 26 25 24 28 28 H 1.08997 * 109.47580 * 270.00063 * 1 2 3 29 29 H 1.09000 * 109.47248 * 30.00196 * 1 2 3 30 30 H 1.09006 * 109.47242 * 150.00086 * 1 2 3 31 31 H 1.09002 * 109.46748 * 29.99473 * 3 2 1 32 32 H 1.09001 * 109.47220 * 149.99522 * 3 2 1 33 33 H 0.96999 * 120.00242 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46682 * 59.99911 * 14 12 2 35 35 H 1.08999 * 109.46691 * 299.99998 * 14 12 2 36 36 H 1.08999 * 109.47706 * 59.99868 * 15 14 12 37 37 H 1.09007 * 109.47118 * 300.00195 * 15 14 12 38 38 H 1.00898 * 110.99877 * 303.95357 * 16 15 14 39 39 H 1.09002 * 109.47153 * 304.99641 * 19 17 16 40 40 H 1.09001 * 109.46832 * 184.99832 * 19 17 16 41 41 H 0.96701 * 113.99881 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.54380 * 302.97785 * 23 21 17 43 43 H 1.09003 * 109.54403 * 63.24453 * 23 21 17 44 44 H 1.09008 * 109.52063 * 176.88663 * 24 23 21 45 45 H 1.08998 * 109.52215 * 297.07309 * 24 23 21 46 46 H 1.09004 * 109.48100 * 62.36678 * 25 24 23 47 47 H 1.08996 * 109.48350 * 182.40090 * 25 24 23 48 48 H 1.08996 * 109.48360 * 178.85963 * 27 26 25 49 49 H 1.09007 * 109.47911 * 58.82583 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.5525 3.6185 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.3066 4.2600 -3.9004 10 1 4.6970 4.2007 -3.4965 11 1 3.5544 2.2203 -4.3048 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4724 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 -0.0001 17 6 2.5696 -6.0491 0.0005 18 1 3.4528 -5.8016 -0.5884 19 6 2.9872 -6.3664 1.4378 20 8 1.8467 -6.8031 2.1798 21 6 1.8749 -7.2681 -0.6098 22 1 0.9902 -7.5150 -0.0229 23 6 2.8377 -8.4594 -0.6092 24 6 2.1589 -9.6507 -1.2923 25 6 1.7371 -9.2453 -2.7070 26 8 0.8676 -8.1133 -2.6374 27 6 1.4640 -6.9548 -2.0508 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1384 0.5139 33 1 4.0287 4.4448 -0.8503 34 1 0.7590 -2.5302 -0.8897 35 1 0.7583 -2.5299 0.8903 36 1 3.0062 -3.5776 0.8904 37 1 3.0062 -3.5775 -0.8895 38 1 1.0083 -4.9577 0.7810 39 1 3.4016 -5.4713 1.9018 40 1 3.7402 -7.1544 1.4317 41 1 2.0378 -7.0219 3.1022 42 1 3.7447 -8.1955 -1.1530 43 1 3.0905 -8.7235 0.4178 44 1 2.8570 -10.4862 -1.3456 45 1 1.2792 -9.9457 -0.7203 46 1 2.6214 -8.9891 -3.2906 47 1 1.2155 -10.0758 -3.1828 48 1 0.7456 -6.1351 -2.0539 49 1 2.3447 -6.6686 -2.6258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365305464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:57 Heat of formation + Delta-G solvation = -144.437392 kcal Electronic energy + Delta-G solvation = -26953.957961 eV Core-core repulsion = 23108.496186 eV Total energy + Delta-G solvation = -3845.461775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95498 -39.00685 -37.89950 -35.69276 -34.78515 -33.97353 -32.65255 -32.08434 -30.01020 -28.08327 -27.25590 -25.74937 -25.21469 -23.92646 -23.35265 -21.78715 -21.16456 -20.17299 -18.30114 -17.70763 -16.57575 -16.50206 -16.33326 -16.22908 -15.70017 -15.49303 -15.09984 -14.91620 -14.76099 -14.63949 -14.16261 -14.05927 -13.63197 -13.47490 -12.78666 -12.74304 -12.44538 -12.31445 -12.19610 -12.12887 -11.90255 -11.79637 -11.54518 -11.39482 -11.17621 -11.09717 -11.03288 -10.85175 -10.74664 -10.53758 -10.42301 -10.26470 -10.14666 -9.61429 -9.58405 -8.88146 -8.45281 -8.42874 -7.62288 -6.03529 -4.08206 3.30842 3.37073 3.40640 3.48025 3.66418 3.76937 3.99196 4.31164 4.45120 4.47138 4.59509 4.64451 4.74233 4.85922 5.03690 5.06583 5.11152 5.19270 5.21335 5.29626 5.31687 5.32269 5.41164 5.43770 5.54469 5.59746 5.65236 5.66500 5.78329 5.79723 5.83322 5.95440 6.05648 6.12489 6.16782 6.22535 6.25980 6.93587 7.06957 7.09926 7.26647 7.35701 7.45130 7.55953 7.93082 8.24644 8.44253 8.91441 9.11596 9.56955 11.04556 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002534 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.711013 B =11046.779059 C =11755.906002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.505 3.495 13 O -0.547 6.547 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.683 5.683 17 C 0.097 3.903 18 H 0.089 0.911 19 C 0.043 3.957 20 O -0.566 6.566 21 C -0.103 4.103 22 H 0.088 0.912 23 C -0.119 4.119 24 C -0.153 4.153 25 C 0.058 3.942 26 O -0.385 6.385 27 C 0.072 3.928 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.349 0.651 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.378 0.622 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 -25.424 3.538 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.425 6.425 14 C -0.177 4.177 15 C -0.055 4.055 16 N -0.314 5.314 17 C -0.013 4.013 18 H 0.107 0.893 19 C -0.037 4.037 20 O -0.371 6.371 21 C -0.122 4.122 22 H 0.107 0.893 23 C -0.157 4.157 24 C -0.191 4.191 25 C -0.019 4.019 26 O -0.303 6.303 27 C -0.005 4.005 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.127 0.873 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.797 -25.108 2.249 25.661 hybrid contribution 1.128 0.435 0.705 1.399 sum -3.669 -24.673 2.954 25.119 Atomic orbital electron populations 1.21641 0.81396 1.02690 1.00353 1.48162 1.06221 1.07888 1.71272 1.19280 0.92522 0.78194 0.97490 1.21438 1.36390 1.06227 0.92321 0.92458 1.24946 0.95379 0.96409 0.97463 1.69934 1.38537 1.14293 1.30739 0.86490 0.77659 0.78596 0.84646 1.20629 1.21105 1.19859 1.20293 0.88049 0.85183 0.77388 1.90657 1.14026 1.87389 1.50454 1.21598 0.99269 0.92825 1.03993 1.21710 0.94957 0.86959 1.01877 1.60504 1.19333 1.00983 1.50564 1.21630 0.95756 0.91127 0.92797 0.89264 1.22940 0.88356 0.98345 0.94017 1.86449 1.34818 1.88961 1.26918 1.21619 0.99530 0.93445 0.97587 0.89338 1.21679 0.98153 0.94928 1.00916 1.22160 1.01224 0.98239 0.97485 1.22547 0.94366 0.89275 0.95682 1.87954 1.39757 1.21050 1.81579 1.22610 0.99006 0.87604 0.91232 0.93845 0.90845 0.92222 0.95075 0.93925 0.92740 0.88612 0.89912 0.94574 0.90174 0.83221 0.93418 0.93175 0.77531 0.92075 0.91507 0.91209 0.91080 0.93454 0.89297 0.87347 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.84 0.61 1.94 16 2 N -0.60 -12.92 2.86 -182.96 -0.52 -13.44 16 3 C 0.24 6.49 5.16 -5.19 -0.03 6.46 16 4 C -0.52 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.50 10.43 7.67 -10.98 -0.08 10.35 16 13 O -0.55 -13.68 15.56 5.56 0.09 -13.60 16 14 C -0.14 -1.98 4.51 -27.88 -0.13 -2.10 16 15 C 0.07 1.01 4.77 -3.83 -0.02 0.99 16 16 N -0.68 -7.48 5.55 -106.72 -0.59 -8.07 16 17 C 0.10 0.94 2.00 -67.71 -0.14 0.81 16 18 H 0.09 0.90 7.80 -51.93 -0.41 0.49 16 19 C 0.04 0.36 6.21 37.16 0.23 0.59 16 20 O -0.57 -4.60 12.15 -35.23 -0.43 -5.03 16 21 C -0.10 -0.97 1.96 -90.48 -0.18 -1.14 16 22 H 0.09 0.98 7.57 -51.93 -0.39 0.58 16 23 C -0.12 -0.94 4.86 -26.55 -0.13 -1.07 16 24 C -0.15 -1.15 6.14 -26.59 -0.16 -1.31 16 25 C 0.06 0.49 6.84 37.20 0.25 0.75 16 26 O -0.38 -4.42 10.77 -35.23 -0.38 -4.80 16 27 C 0.07 0.77 5.94 37.20 0.22 0.99 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 1.30 7.40 -51.93 -0.38 0.92 16 35 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 37 H 0.08 1.22 8.01 -51.92 -0.42 0.81 16 38 H 0.35 3.75 7.94 -39.29 -0.31 3.44 16 39 H 0.05 0.44 7.35 -51.93 -0.38 0.06 16 40 H 0.05 0.36 6.79 -51.93 -0.35 0.01 16 41 H 0.38 1.62 9.12 45.56 0.42 2.03 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.50 6.74 -51.93 -0.35 0.15 16 44 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.11 1.25 7.70 -51.93 -0.40 0.85 16 49 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -34.24 387.14 -8.09 -42.33 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.84 Total: 2.39 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.04 Total: 3.48 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.38 Total: -47.65 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.72 Total: -23.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.24 -8.09 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365305464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.112 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds