Wall clock time and date at job start Tue Mar 31 2020 10:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46501 * 120.00163 * 2 1 4 4 C 1.50697 * 109.47002 * 269.99531 * 3 2 1 5 5 H 1.07994 * 119.99843 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99642 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00416 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99782 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47617 * 89.99845 * 8 6 4 10 10 H 1.48503 * 109.47196 * 209.99941 * 8 6 4 11 11 H 1.48501 * 109.46891 * 329.99473 * 8 6 4 12 12 C 1.34776 * 120.00089 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00346 * 180.02562 * 12 2 1 14 14 C 1.50709 * 120.00013 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47136 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47061 * 180.02562 * 15 14 12 17 17 C 1.46905 * 110.99851 * 180.02562 * 16 15 14 18 18 H 1.09001 * 109.47063 * 324.99524 * 17 16 15 19 19 C 1.52997 * 109.47150 * 85.00128 * 17 16 15 20 20 O 1.42898 * 109.47319 * 64.99949 * 19 17 16 21 21 C 1.53001 * 109.46678 * 205.00125 * 17 16 15 22 22 H 1.08998 * 109.52501 * 300.12172 * 21 17 16 23 23 C 1.53178 * 109.52015 * 180.02562 * 21 17 16 24 24 C 1.53179 * 109.03514 * 183.11205 * 23 21 17 25 25 C 1.53089 * 109.16642 * 56.98305 * 24 23 21 26 26 O 1.42908 * 109.41189 * 302.39087 * 25 24 23 27 27 C 1.42899 * 114.09969 * 61.15261 * 26 25 24 28 28 H 1.08997 * 109.47580 * 270.00063 * 1 2 3 29 29 H 1.09000 * 109.47248 * 30.00196 * 1 2 3 30 30 H 1.09006 * 109.47242 * 150.00086 * 1 2 3 31 31 H 1.09002 * 109.46748 * 29.99473 * 3 2 1 32 32 H 1.09001 * 109.47220 * 149.99522 * 3 2 1 33 33 H 0.96999 * 120.00242 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46682 * 59.99911 * 14 12 2 35 35 H 1.08999 * 109.46691 * 299.99998 * 14 12 2 36 36 H 1.08999 * 109.47706 * 59.99868 * 15 14 12 37 37 H 1.09007 * 109.47118 * 300.00195 * 15 14 12 38 38 H 1.00898 * 110.99877 * 303.95357 * 16 15 14 39 39 H 1.09002 * 109.47153 * 304.99641 * 19 17 16 40 40 H 1.09001 * 109.46832 * 184.99832 * 19 17 16 41 41 H 0.96701 * 113.99881 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.54380 * 302.97785 * 23 21 17 43 43 H 1.09003 * 109.54403 * 63.24453 * 23 21 17 44 44 H 1.09008 * 109.52063 * 176.88663 * 24 23 21 45 45 H 1.08998 * 109.52215 * 297.07309 * 24 23 21 46 46 H 1.09004 * 109.48100 * 62.36678 * 25 24 23 47 47 H 1.08996 * 109.48350 * 182.40090 * 25 24 23 48 48 H 1.08996 * 109.48360 * 178.85963 * 27 26 25 49 49 H 1.09007 * 109.47911 * 58.82583 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.5525 3.6185 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.3066 4.2600 -3.9004 10 1 4.6970 4.2007 -3.4965 11 1 3.5544 2.2203 -4.3048 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4724 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 -0.0001 17 6 2.5696 -6.0491 0.0005 18 1 3.4528 -5.8016 -0.5884 19 6 2.9872 -6.3664 1.4378 20 8 1.8467 -6.8031 2.1798 21 6 1.8749 -7.2681 -0.6098 22 1 0.9902 -7.5150 -0.0229 23 6 2.8377 -8.4594 -0.6092 24 6 2.1589 -9.6507 -1.2923 25 6 1.7371 -9.2453 -2.7070 26 8 0.8676 -8.1133 -2.6374 27 6 1.4640 -6.9548 -2.0508 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1384 0.5139 33 1 4.0287 4.4448 -0.8503 34 1 0.7590 -2.5302 -0.8897 35 1 0.7583 -2.5299 0.8903 36 1 3.0062 -3.5776 0.8904 37 1 3.0062 -3.5775 -0.8895 38 1 1.0083 -4.9577 0.7810 39 1 3.4016 -5.4713 1.9018 40 1 3.7402 -7.1544 1.4317 41 1 2.0378 -7.0219 3.1022 42 1 3.7447 -8.1955 -1.1530 43 1 3.0905 -8.7235 0.4178 44 1 2.8570 -10.4862 -1.3456 45 1 1.2792 -9.9457 -0.7203 46 1 2.6214 -8.9891 -3.2906 47 1 1.2155 -10.0758 -3.1828 48 1 0.7456 -6.1351 -2.0539 49 1 2.3447 -6.6686 -2.6258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365305464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:56 Heat of formation + Delta-G solvation = -171.536030 kcal Electronic energy + Delta-G solvation = -26955.133046 eV Core-core repulsion = 23108.496186 eV Total energy + Delta-G solvation = -3846.636860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83574 -40.50238 -38.68717 -36.72964 -36.33970 -34.88115 -34.66170 -32.98556 -31.13561 -29.64342 -28.35639 -27.25599 -26.06495 -25.18936 -24.51105 -23.19166 -21.91894 -20.94649 -19.86955 -18.71140 -18.37434 -17.80491 -17.29065 -17.10506 -17.03558 -16.77848 -16.37960 -15.98925 -15.86574 -15.54711 -15.44198 -14.95179 -14.79870 -14.44193 -14.19155 -13.98003 -13.64740 -13.45166 -13.44419 -13.36301 -13.14829 -13.04255 -12.83366 -12.71284 -12.64987 -12.39877 -12.21210 -12.13145 -12.04719 -11.83843 -11.70994 -11.44933 -11.16176 -10.91586 -10.65187 -10.59247 -10.33906 -9.41998 -9.34974 -8.23415 -6.38478 1.35912 1.38768 1.49329 1.85111 2.29710 2.42990 3.01665 3.05285 3.06699 3.49645 3.73006 3.84103 3.90985 4.00397 4.04657 4.05758 4.20075 4.24141 4.36382 4.42080 4.42891 4.45738 4.60873 4.63579 4.66323 4.70570 4.73187 4.83927 4.92959 4.95985 4.96272 5.00249 5.01208 5.08601 5.12073 5.17535 5.22170 5.34267 5.48010 5.55684 5.83938 6.00563 6.05402 6.35423 6.46706 6.69000 6.79962 6.85434 7.27492 7.48934 8.83610 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002534 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.711013 B =11046.779059 C =11755.906002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.118 4.118 15 C 0.085 3.915 16 N -0.675 5.675 17 C 0.094 3.906 18 H 0.084 0.916 19 C 0.050 3.950 20 O -0.577 6.577 21 C -0.090 4.090 22 H 0.075 0.925 23 C -0.118 4.118 24 C -0.149 4.149 25 C 0.050 3.950 26 O -0.407 6.407 27 C 0.072 3.928 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.023 0.977 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.024 0.976 37 H 0.059 0.941 38 H 0.353 0.647 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.395 0.605 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 -27.201 2.995 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.158 4.158 15 C -0.044 4.044 16 N -0.307 5.307 17 C -0.016 4.016 18 H 0.102 0.898 19 C -0.030 4.030 20 O -0.385 6.385 21 C -0.110 4.110 22 H 0.094 0.906 23 C -0.155 4.155 24 C -0.187 4.187 25 C -0.026 4.026 26 O -0.327 6.327 27 C -0.004 4.004 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.173 0.827 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.245 0.755 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.004 -26.915 1.728 27.630 hybrid contribution 1.467 0.939 0.921 1.970 sum -4.537 -25.975 2.649 26.501 Atomic orbital electron populations 1.21940 0.77795 1.04061 1.02597 1.48211 1.08485 1.06443 1.71191 1.18750 0.91072 0.80550 0.96007 1.21702 1.36813 1.06553 0.93040 0.92927 1.25883 0.94893 0.96425 1.02080 1.70052 1.39025 1.14758 1.33067 0.85398 0.78108 0.78216 0.78985 1.18755 1.20570 1.19762 1.21388 0.87797 0.86737 0.75748 1.90625 1.16729 1.88288 1.52713 1.21524 0.98949 0.89009 1.06292 1.21472 0.94567 0.88037 1.00344 1.60456 1.19292 1.00155 1.50769 1.21682 0.95350 0.90681 0.93927 0.89821 1.22792 0.88707 0.98541 0.92955 1.86407 1.34792 1.88923 1.28365 1.21467 0.99305 0.93848 0.96333 0.90648 1.21686 0.97852 0.94376 1.01634 1.22135 1.01414 0.98595 0.96525 1.22766 0.94440 0.88735 0.96674 1.87915 1.41009 1.21891 1.81836 1.22557 0.98453 0.87383 0.92020 0.91092 0.91734 0.88614 0.95927 0.98506 0.92380 0.86730 0.86671 0.95801 0.92288 0.82709 0.94361 0.91583 0.75526 0.91669 0.90622 0.89206 0.91603 0.92968 0.87989 0.88569 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.64 16 2 N -0.61 -26.28 2.86 -851.14 -2.43 -28.71 16 3 C 0.26 14.19 5.16 85.63 0.44 14.63 16 4 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 8 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 9 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.49 20.54 7.67 87.66 0.67 21.21 16 13 O -0.60 -31.31 15.56 -3.02 -0.05 -31.36 16 14 C -0.12 -3.20 4.51 29.85 0.13 -3.07 16 15 C 0.09 2.28 4.77 86.30 0.41 2.69 16 16 N -0.68 -13.94 5.55 -491.57 -2.73 -16.67 16 17 C 0.09 1.72 2.00 44.91 0.09 1.81 16 18 H 0.08 1.64 7.80 -2.39 -0.02 1.62 16 19 C 0.05 0.76 6.21 71.98 0.45 1.20 16 20 O -0.58 -8.20 12.15 -148.98 -1.81 -10.01 16 21 C -0.09 -1.59 1.96 -10.70 -0.02 -1.61 16 22 H 0.08 1.56 7.57 -2.39 -0.02 1.55 16 23 C -0.12 -1.64 4.86 30.71 0.15 -1.49 16 24 C -0.15 -1.92 6.14 30.68 0.19 -1.73 16 25 C 0.05 0.77 6.84 72.01 0.49 1.27 16 26 O -0.41 -9.02 10.77 -148.98 -1.60 -10.63 16 27 C 0.07 1.50 5.94 72.01 0.43 1.92 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.10 2.17 6.44 -2.38 -0.02 2.15 16 31 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.11 2.77 7.40 -2.39 -0.02 2.75 16 35 H 0.12 2.45 8.11 -2.39 -0.02 2.43 16 36 H 0.02 0.69 7.32 -2.39 -0.02 0.67 16 37 H 0.06 1.83 8.01 -2.38 -0.02 1.81 16 38 H 0.35 6.89 7.94 -89.70 -0.71 6.18 16 39 H 0.04 0.66 7.35 -2.39 -0.02 0.65 16 40 H 0.07 0.81 6.79 -2.39 -0.02 0.79 16 41 H 0.40 2.51 9.12 -74.06 -0.68 1.83 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.94 6.74 -2.39 -0.02 0.92 16 44 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 2.18 7.70 -2.39 -0.02 2.16 16 49 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -77.21 387.14 -1.31 -78.52 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.45 Total: 18.30 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.45 Total: 9.69 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -4.88 Total: -102.01 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -3.46 Total: -52.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -77.21 -1.31 -78.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365305464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.020 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds