Wall clock time and date at job start Tue Mar 31 2020 10:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00396 * 2 1 4 4 C 1.50699 * 109.47105 * 269.99930 * 3 2 1 5 5 H 1.07996 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00047 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47023 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46880 * 119.99778 * 8 6 4 11 11 H 1.48500 * 109.47307 * 239.99981 * 8 6 4 12 12 C 1.34784 * 119.99830 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99842 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99912 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.46965 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46870 * 179.97438 * 15 14 12 17 17 C 1.46901 * 110.99625 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47492 * 35.00284 * 17 16 15 19 19 C 1.52995 * 109.47254 * 275.00008 * 17 16 15 20 20 O 1.42900 * 109.47134 * 294.99958 * 19 17 16 21 21 C 1.53005 * 109.46868 * 155.00086 * 17 16 15 22 22 H 1.09002 * 109.52314 * 59.99890 * 21 17 16 23 23 C 1.53179 * 109.57537 * 180.15624 * 21 17 16 24 24 C 1.53170 * 109.03827 * 176.91747 * 23 21 17 25 25 C 1.53092 * 109.16424 * 303.02003 * 24 23 21 26 26 O 1.42909 * 109.41369 * 57.60525 * 25 24 23 27 27 C 1.42900 * 114.10163 * 298.84292 * 26 25 24 28 28 H 1.08995 * 109.46973 * 270.00393 * 1 2 3 29 29 H 1.09009 * 109.46601 * 30.00295 * 1 2 3 30 30 H 1.09001 * 109.46991 * 149.99834 * 1 2 3 31 31 H 1.09000 * 109.46971 * 29.99941 * 3 2 1 32 32 H 1.08997 * 109.47456 * 149.99767 * 3 2 1 33 33 H 0.97005 * 119.99758 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47102 * 59.99688 * 14 12 2 35 35 H 1.09001 * 109.47142 * 299.99900 * 14 12 2 36 36 H 1.09001 * 109.47332 * 59.99992 * 15 14 12 37 37 H 1.09001 * 109.47242 * 300.00002 * 15 14 12 38 38 H 1.00899 * 110.99815 * 56.04581 * 16 15 14 39 39 H 1.08995 * 109.47209 * 55.00297 * 19 17 16 40 40 H 1.09003 * 109.47264 * 175.00125 * 19 17 16 41 41 H 0.96701 * 114.00009 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.54274 * 296.78698 * 23 21 17 43 43 H 1.09009 * 109.54120 * 57.05030 * 23 21 17 44 44 H 1.08998 * 109.52614 * 183.11927 * 24 23 21 45 45 H 1.08993 * 109.57458 * 62.95745 * 24 23 21 46 46 H 1.09001 * 109.48181 * 297.63099 * 25 24 23 47 47 H 1.08997 * 109.49472 * 177.59768 * 25 24 23 48 48 H 1.09001 * 109.47755 * 301.17703 * 27 26 25 49 49 H 1.08997 * 109.48942 * 181.14328 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5527 3.6185 -0.6731 8 14 3.4382 3.4167 -3.4339 9 1 2.8611 2.4162 -4.3673 10 1 2.8002 4.7370 -3.6680 11 1 4.9008 3.5255 -3.6666 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4724 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6449 -4.9074 0.0011 17 6 2.5694 -6.0491 0.0005 18 1 3.4527 -5.8017 0.5894 19 6 2.9870 -6.3664 -1.4367 20 8 1.8465 -6.8031 -2.1787 21 6 1.8747 -7.2681 0.6108 22 1 0.9912 -7.5163 0.0226 23 6 2.8380 -8.4591 0.6149 24 6 2.1576 -9.6496 1.2975 25 6 1.7311 -9.2425 2.7103 26 8 0.8614 -8.1109 2.6363 27 6 1.4591 -6.9528 2.0501 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8901 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6086 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0296 4.4444 -0.8504 34 1 0.7590 -2.5302 -0.8897 35 1 0.7584 -2.5299 0.8903 36 1 3.0062 -3.5775 0.8905 37 1 3.0062 -3.5775 -0.8895 38 1 1.0082 -4.9577 -0.7800 39 1 3.4014 -5.4714 -1.9006 40 1 3.7401 -7.1544 -1.4307 41 1 2.0376 -7.0219 -3.1011 42 1 3.0942 -8.7244 -0.4108 43 1 3.7432 -8.1940 1.1613 44 1 2.8558 -10.4847 1.3543 45 1 1.2800 -9.9470 0.7235 46 1 2.6133 -8.9850 3.2963 47 1 1.2083 -10.0723 3.1857 48 1 2.3378 -6.6656 2.6276 49 1 0.7404 -6.1334 2.0497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365305466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:59 Heat of formation + Delta-G solvation = -144.674438 kcal Electronic energy + Delta-G solvation = -26939.854912 eV Core-core repulsion = 23094.382859 eV Total energy + Delta-G solvation = -3845.472054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95947 -39.00739 -37.89413 -35.67987 -34.78524 -33.97854 -32.66293 -32.09192 -30.01387 -28.08346 -27.25443 -25.75134 -25.22344 -23.92972 -23.36161 -21.79018 -21.16442 -20.17863 -18.30166 -17.69000 -16.55699 -16.50603 -16.36318 -16.23457 -15.74927 -15.44054 -15.11008 -14.88613 -14.76395 -14.66982 -14.21561 -14.07685 -13.61285 -13.40535 -12.79716 -12.75517 -12.45648 -12.33473 -12.20941 -12.11330 -11.89217 -11.82035 -11.56363 -11.40582 -11.18343 -11.10847 -11.02459 -10.85048 -10.74728 -10.56125 -10.43469 -10.24465 -10.16551 -9.61046 -9.59733 -8.88385 -8.45384 -8.44502 -7.62274 -6.04866 -4.09526 3.28422 3.35360 3.38793 3.47471 3.66904 3.75563 4.00199 4.31021 4.44747 4.45721 4.59031 4.63775 4.74007 4.86429 5.03307 5.08036 5.10750 5.18840 5.22828 5.28430 5.30456 5.31673 5.39900 5.43461 5.53299 5.58208 5.63154 5.67898 5.78041 5.79758 5.86897 5.95542 6.04746 6.11442 6.15337 6.22331 6.24565 6.93642 7.06959 7.08272 7.28473 7.35887 7.45238 7.55584 7.91838 8.23546 8.44180 8.90351 9.11312 9.55546 11.03224 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002422 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.739372 B =11557.925805 C =12134.928239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.547 6.547 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.683 5.683 17 C 0.098 3.902 18 H 0.089 0.911 19 C 0.042 3.958 20 O -0.567 6.567 21 C -0.103 4.103 22 H 0.088 0.912 23 C -0.119 4.119 24 C -0.153 4.153 25 C 0.059 3.941 26 O -0.385 6.385 27 C 0.072 3.928 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.349 0.651 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.378 0.622 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.044 0.956 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -25.418 2.203 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.425 6.425 14 C -0.177 4.177 15 C -0.055 4.055 16 N -0.314 5.314 17 C -0.013 4.013 18 H 0.107 0.893 19 C -0.037 4.037 20 O -0.372 6.372 21 C -0.122 4.122 22 H 0.107 0.893 23 C -0.157 4.157 24 C -0.191 4.191 25 C -0.018 4.018 26 O -0.304 6.304 27 C -0.004 4.004 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.168 0.832 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.062 0.938 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.811 -25.103 3.582 25.809 hybrid contribution 1.143 0.433 -2.681 2.946 sum -3.668 -24.670 0.902 24.957 Atomic orbital electron populations 1.21640 0.81389 1.02549 1.00465 1.48163 1.06221 1.07883 1.71276 1.19286 0.92576 0.78219 0.97460 1.21466 1.36347 1.06171 0.92328 0.92510 1.24951 0.95430 0.96423 0.97432 1.69947 1.38486 1.14323 1.30634 0.86443 0.78054 0.78313 0.84597 1.19866 1.20934 1.20886 1.20293 0.88050 0.85183 0.77384 1.90657 1.14023 1.87391 1.50462 1.21597 0.99271 0.92824 1.03993 1.21708 0.94969 0.86973 1.01880 1.60520 1.19322 1.00984 1.50595 1.21623 0.95718 0.91116 0.92827 0.89300 1.22939 0.88365 0.98393 0.94007 1.86443 1.34810 1.88960 1.26955 1.21621 0.99536 0.93469 0.97579 0.89330 1.21676 0.98124 0.94918 1.00946 1.22157 1.01229 0.98248 0.97490 1.22547 0.94335 0.89268 0.95696 1.87953 1.39667 1.21128 1.81630 1.22607 0.98933 0.87605 0.91266 0.93691 0.90888 0.92358 0.95023 0.93872 0.92777 0.89741 0.88785 0.90287 0.94439 0.83163 0.93361 0.93192 0.77480 0.91489 0.92080 0.91206 0.91070 0.93466 0.89294 0.93815 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.95 16 2 N -0.60 -12.91 2.86 -182.95 -0.52 -13.44 16 3 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 4 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.50 10.43 7.67 -10.98 -0.08 10.34 16 13 O -0.55 -13.67 15.56 5.56 0.09 -13.59 16 14 C -0.14 -1.98 4.51 -27.89 -0.13 -2.10 16 15 C 0.07 1.00 4.77 -3.82 -0.02 0.98 16 16 N -0.68 -7.48 5.54 -106.72 -0.59 -8.07 16 17 C 0.10 0.95 2.00 -67.71 -0.14 0.81 16 18 H 0.09 0.88 7.80 -51.93 -0.41 0.48 16 19 C 0.04 0.37 6.22 37.16 0.23 0.60 16 20 O -0.57 -4.82 12.14 -35.23 -0.43 -5.24 16 21 C -0.10 -0.96 1.96 -90.48 -0.18 -1.14 16 22 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 23 C -0.12 -0.93 4.87 -26.55 -0.13 -1.06 16 24 C -0.15 -1.13 6.14 -26.60 -0.16 -1.29 16 25 C 0.06 0.48 6.84 37.21 0.25 0.74 16 26 O -0.39 -4.32 10.77 -35.23 -0.38 -4.70 16 27 C 0.07 0.75 5.93 37.21 0.22 0.97 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 30 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 35 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 36 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 37 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 38 H 0.35 3.85 7.94 -39.29 -0.31 3.54 16 39 H 0.05 0.47 7.35 -51.93 -0.38 0.09 16 40 H 0.05 0.37 6.80 -51.93 -0.35 0.02 16 41 H 0.38 1.80 9.12 45.56 0.42 2.22 16 42 H 0.07 0.50 6.75 -51.93 -0.35 0.15 16 43 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.11 1.20 7.69 -51.93 -0.40 0.80 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -34.13 387.14 -8.09 -42.22 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.84 Total: 2.57 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 0.04 Total: 3.52 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.38 Total: -47.56 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.72 Total: -23.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.13 -8.09 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365305466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.453 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds