Wall clock time and date at job start Tue Mar 31 2020 10:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00396 * 2 1 4 4 C 1.50699 * 109.47105 * 269.99930 * 3 2 1 5 5 H 1.07996 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00047 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47023 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46880 * 119.99778 * 8 6 4 11 11 H 1.48500 * 109.47307 * 239.99981 * 8 6 4 12 12 C 1.34784 * 119.99830 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99842 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99912 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.46965 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46870 * 179.97438 * 15 14 12 17 17 C 1.46901 * 110.99625 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47492 * 35.00284 * 17 16 15 19 19 C 1.52995 * 109.47254 * 275.00008 * 17 16 15 20 20 O 1.42900 * 109.47134 * 294.99958 * 19 17 16 21 21 C 1.53005 * 109.46868 * 155.00086 * 17 16 15 22 22 H 1.09002 * 109.52314 * 59.99890 * 21 17 16 23 23 C 1.53179 * 109.57537 * 180.15624 * 21 17 16 24 24 C 1.53170 * 109.03827 * 176.91747 * 23 21 17 25 25 C 1.53092 * 109.16424 * 303.02003 * 24 23 21 26 26 O 1.42909 * 109.41369 * 57.60525 * 25 24 23 27 27 C 1.42900 * 114.10163 * 298.84292 * 26 25 24 28 28 H 1.08995 * 109.46973 * 270.00393 * 1 2 3 29 29 H 1.09009 * 109.46601 * 30.00295 * 1 2 3 30 30 H 1.09001 * 109.46991 * 149.99834 * 1 2 3 31 31 H 1.09000 * 109.46971 * 29.99941 * 3 2 1 32 32 H 1.08997 * 109.47456 * 149.99767 * 3 2 1 33 33 H 0.97005 * 119.99758 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47102 * 59.99688 * 14 12 2 35 35 H 1.09001 * 109.47142 * 299.99900 * 14 12 2 36 36 H 1.09001 * 109.47332 * 59.99992 * 15 14 12 37 37 H 1.09001 * 109.47242 * 300.00002 * 15 14 12 38 38 H 1.00899 * 110.99815 * 56.04581 * 16 15 14 39 39 H 1.08995 * 109.47209 * 55.00297 * 19 17 16 40 40 H 1.09003 * 109.47264 * 175.00125 * 19 17 16 41 41 H 0.96701 * 114.00009 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.54274 * 296.78698 * 23 21 17 43 43 H 1.09009 * 109.54120 * 57.05030 * 23 21 17 44 44 H 1.08998 * 109.52614 * 183.11927 * 24 23 21 45 45 H 1.08993 * 109.57458 * 62.95745 * 24 23 21 46 46 H 1.09001 * 109.48181 * 297.63099 * 25 24 23 47 47 H 1.08997 * 109.49472 * 177.59768 * 25 24 23 48 48 H 1.09001 * 109.47755 * 301.17703 * 27 26 25 49 49 H 1.08997 * 109.48942 * 181.14328 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5527 3.6185 -0.6731 8 14 3.4382 3.4167 -3.4339 9 1 2.8611 2.4162 -4.3673 10 1 2.8002 4.7370 -3.6680 11 1 4.9008 3.5255 -3.6666 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4724 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6449 -4.9074 0.0011 17 6 2.5694 -6.0491 0.0005 18 1 3.4527 -5.8017 0.5894 19 6 2.9870 -6.3664 -1.4367 20 8 1.8465 -6.8031 -2.1787 21 6 1.8747 -7.2681 0.6108 22 1 0.9912 -7.5163 0.0226 23 6 2.8380 -8.4591 0.6149 24 6 2.1576 -9.6496 1.2975 25 6 1.7311 -9.2425 2.7103 26 8 0.8614 -8.1109 2.6363 27 6 1.4591 -6.9528 2.0501 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8901 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6086 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0296 4.4444 -0.8504 34 1 0.7590 -2.5302 -0.8897 35 1 0.7584 -2.5299 0.8903 36 1 3.0062 -3.5775 0.8905 37 1 3.0062 -3.5775 -0.8895 38 1 1.0082 -4.9577 -0.7800 39 1 3.4014 -5.4714 -1.9006 40 1 3.7401 -7.1544 -1.4307 41 1 2.0376 -7.0219 -3.1011 42 1 3.0942 -8.7244 -0.4108 43 1 3.7432 -8.1940 1.1613 44 1 2.8558 -10.4847 1.3543 45 1 1.2800 -9.9470 0.7235 46 1 2.6133 -8.9850 3.2963 47 1 1.2083 -10.0723 3.1857 48 1 2.3378 -6.6656 2.6276 49 1 0.7404 -6.1334 2.0497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365305466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:58 Heat of formation + Delta-G solvation = -171.645262 kcal Electronic energy + Delta-G solvation = -26941.024455 eV Core-core repulsion = 23094.382859 eV Total energy + Delta-G solvation = -3846.641596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83342 -40.49938 -38.68648 -36.73048 -36.34165 -34.88016 -34.66248 -32.98486 -31.13278 -29.64553 -28.35887 -27.25675 -26.06149 -25.19062 -24.50976 -23.19095 -21.91768 -20.94420 -19.86954 -18.71477 -18.38106 -17.80515 -17.29560 -17.11059 -17.02829 -16.77589 -16.32456 -16.05634 -15.84711 -15.57803 -15.44882 -14.95192 -14.76735 -14.43070 -14.16362 -13.98326 -13.70692 -13.45755 -13.44559 -13.34183 -13.15072 -13.03105 -12.83752 -12.70775 -12.66726 -12.43996 -12.22437 -12.10291 -12.04140 -11.83483 -11.68451 -11.44948 -11.15598 -10.92359 -10.66602 -10.59370 -10.33482 -9.42249 -9.35581 -8.23859 -6.38982 1.35048 1.37086 1.49113 1.85237 2.29157 2.42522 3.01842 3.05084 3.06499 3.49192 3.72975 3.84177 3.91100 4.00471 4.04789 4.07247 4.19545 4.22543 4.36854 4.41249 4.43105 4.46063 4.61254 4.63977 4.67322 4.70690 4.74119 4.83769 4.93292 4.96080 4.97697 4.99876 5.02687 5.04764 5.12308 5.17938 5.22683 5.34901 5.48257 5.55385 5.83795 6.00326 6.04863 6.36094 6.44626 6.68706 6.79893 6.83936 7.26954 7.48851 8.83403 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002422 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.739372 B =11557.925805 C =12134.928239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.269 1.269 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.118 4.118 15 C 0.085 3.915 16 N -0.674 5.674 17 C 0.094 3.906 18 H 0.086 0.914 19 C 0.048 3.952 20 O -0.577 6.577 21 C -0.091 4.091 22 H 0.074 0.926 23 C -0.118 4.118 24 C -0.149 4.149 25 C 0.051 3.949 26 O -0.407 6.407 27 C 0.073 3.927 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.023 0.977 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.352 0.648 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.395 0.605 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.102 0.898 48 H 0.043 0.957 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 -27.204 0.994 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.194 1.194 11 H -0.207 1.207 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.158 4.158 15 C -0.045 4.045 16 N -0.305 5.305 17 C -0.016 4.016 18 H 0.104 0.896 19 C -0.031 4.031 20 O -0.385 6.385 21 C -0.110 4.110 22 H 0.092 0.908 23 C -0.156 4.156 24 C -0.187 4.187 25 C -0.026 4.026 26 O -0.327 6.327 27 C -0.003 4.003 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.172 0.828 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.244 0.756 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.062 0.938 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.988 -26.920 2.366 27.679 hybrid contribution 1.475 0.941 -2.241 2.843 sum -4.513 -25.978 0.125 26.368 Atomic orbital electron populations 1.21939 0.77794 1.04020 1.02609 1.48214 1.08482 1.06443 1.71198 1.18758 0.91085 0.80560 0.96048 1.21717 1.36739 1.06480 0.92984 0.92910 1.25901 0.94950 0.96448 1.02107 1.70065 1.38992 1.14819 1.33026 0.85338 0.77880 0.78423 0.78973 1.19084 1.19360 1.20714 1.21386 0.87798 0.86731 0.75746 1.90625 1.16719 1.88287 1.52713 1.21523 0.98952 0.89016 1.06283 1.21484 0.94571 0.88040 1.00366 1.60485 1.19219 1.00168 1.50661 1.21683 0.95411 0.90712 0.93784 0.89629 1.22808 0.88723 0.98472 0.93110 1.86403 1.34833 1.88915 1.28356 1.21471 0.99239 0.93800 0.96480 0.90779 1.21683 0.97884 0.94398 1.01586 1.22133 1.01372 0.98585 0.96620 1.22761 0.94458 0.88749 0.96589 1.87915 1.40927 1.21974 1.81864 1.22559 0.98507 0.87384 0.91898 0.91158 0.91705 0.88608 0.95944 0.98512 0.92383 0.87202 0.86217 0.91791 0.96247 0.82834 0.94579 0.91558 0.75558 0.90774 0.91559 0.89232 0.91690 0.92861 0.88001 0.93824 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.27 2.86 -851.11 -2.43 -28.70 16 3 C 0.26 14.15 5.16 85.63 0.44 14.59 16 4 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.00 0.27 5.46 84.65 0.46 0.74 16 7 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 8 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.49 20.52 7.67 87.66 0.67 21.20 16 13 O -0.60 -31.27 15.56 -3.03 -0.05 -31.31 16 14 C -0.12 -3.20 4.51 29.85 0.13 -3.07 16 15 C 0.09 2.26 4.77 86.30 0.41 2.67 16 16 N -0.67 -13.90 5.54 -491.56 -2.72 -16.63 16 17 C 0.09 1.73 2.00 44.92 0.09 1.82 16 18 H 0.09 1.64 7.80 -2.39 -0.02 1.62 16 19 C 0.05 0.77 6.22 71.98 0.45 1.22 16 20 O -0.58 -8.73 12.14 -148.98 -1.81 -10.54 16 21 C -0.09 -1.58 1.96 -10.70 -0.02 -1.60 16 22 H 0.07 1.54 7.56 -2.39 -0.02 1.52 16 23 C -0.12 -1.62 4.87 30.71 0.15 -1.47 16 24 C -0.15 -1.89 6.14 30.68 0.19 -1.70 16 25 C 0.05 0.76 6.84 72.01 0.49 1.25 16 26 O -0.41 -8.76 10.77 -148.98 -1.60 -10.37 16 27 C 0.07 1.45 5.93 72.01 0.43 1.88 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 2.05 8.07 -2.38 -0.02 2.03 16 30 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 31 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 33 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 34 H 0.11 2.49 7.40 -2.39 -0.02 2.47 16 35 H 0.12 2.72 8.11 -2.39 -0.02 2.70 16 36 H 0.06 1.90 8.01 -2.39 -0.02 1.88 16 37 H 0.02 0.58 7.32 -2.39 -0.02 0.57 16 38 H 0.35 7.07 7.94 -89.69 -0.71 6.36 16 39 H 0.04 0.67 7.35 -2.39 -0.02 0.65 16 40 H 0.07 0.85 6.80 -2.39 -0.02 0.83 16 41 H 0.39 2.95 9.12 -74.06 -0.68 2.27 16 42 H 0.07 0.93 6.75 -2.38 -0.02 0.91 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.10 2.10 7.69 -2.39 -0.02 2.09 16 Total: -1.00 -76.88 387.14 -1.30 -78.18 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.45 Total: 18.86 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.45 Total: 9.84 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.87 Total: -101.87 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -3.46 Total: -52.22 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.88 -1.30 -78.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365305466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.462 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds