Wall clock time and date at job start Tue Mar 31 2020 10:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00106 * 2 1 4 4 C 1.50697 * 109.46829 * 270.00341 * 3 2 1 5 5 H 1.07999 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99469 * 179.72343 * 4 3 2 7 7 N 1.31511 * 120.00079 * 0.27032 * 6 4 3 8 8 Si 1.86800 * 119.99833 * 180.27014 * 6 4 3 9 9 H 1.48501 * 109.47300 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47051 * 119.99853 * 8 6 4 11 11 H 1.48497 * 109.47356 * 240.00093 * 8 6 4 12 12 C 1.34777 * 120.00325 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00305 * 179.97438 * 12 2 1 14 14 C 1.50705 * 119.99973 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47255 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47002 * 179.97438 * 15 14 12 17 17 C 1.46910 * 111.00005 * 179.97438 * 16 15 14 18 18 H 1.09002 * 109.46463 * 324.99791 * 17 16 15 19 19 C 1.52997 * 109.46963 * 84.99531 * 17 16 15 20 20 O 1.42903 * 109.46750 * 64.65660 * 19 17 16 21 21 C 1.52998 * 109.46965 * 205.00032 * 17 16 15 22 22 H 1.09005 * 109.52256 * 295.74938 * 21 17 16 23 23 C 1.53173 * 109.52431 * 55.87625 * 21 17 16 24 24 C 1.53175 * 109.03749 * 176.88533 * 23 21 17 25 25 C 1.53098 * 109.16285 * 303.02005 * 24 23 21 26 26 O 1.42903 * 109.41399 * 57.60969 * 25 24 23 27 27 C 1.42905 * 114.09446 * 298.83820 * 26 25 24 28 28 H 1.09004 * 109.47000 * 90.00570 * 1 2 3 29 29 H 1.09003 * 109.47301 * 209.99544 * 1 2 3 30 30 H 1.08998 * 109.47287 * 330.00063 * 1 2 3 31 31 H 1.08995 * 109.47229 * 149.99808 * 3 2 1 32 32 H 1.08996 * 109.46597 * 29.99727 * 3 2 1 33 33 H 0.97000 * 119.99729 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46696 * 299.99779 * 14 12 2 35 35 H 1.08995 * 109.47210 * 59.99564 * 14 12 2 36 36 H 1.09008 * 109.46794 * 299.99663 * 15 14 12 37 37 H 1.08995 * 109.47414 * 59.99632 * 15 14 12 38 38 H 1.00896 * 111.00263 * 303.94583 * 16 15 14 39 39 H 1.08997 * 109.46880 * 184.65360 * 19 17 16 40 40 H 1.08997 * 109.47363 * 304.65217 * 19 17 16 41 41 H 0.96704 * 113.99767 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.54526 * 296.75041 * 23 21 17 43 43 H 1.08999 * 109.54431 * 57.02234 * 23 21 17 44 44 H 1.09002 * 109.52294 * 62.92122 * 24 23 21 45 45 H 1.08995 * 109.52688 * 183.04978 * 24 23 21 46 46 H 1.08998 * 109.47929 * 177.58493 * 25 24 23 47 47 H 1.08993 * 109.47991 * 297.61222 * 25 24 23 48 48 H 1.08989 * 109.48701 * 301.17863 * 27 26 25 49 49 H 1.09003 * 109.47938 * 181.13822 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1214 2.8806 -1.6727 7 7 3.5486 3.6207 -0.6731 8 14 3.4260 3.4237 -3.4339 9 1 2.8492 2.4231 -4.3673 10 1 2.7829 4.7425 -3.6635 11 1 4.8875 3.5377 -3.6710 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 7 1.6452 -4.9074 0.0024 17 6 2.5698 -6.0491 0.0031 18 1 3.4526 -5.8019 -0.5865 19 6 2.9884 -6.3654 1.4402 20 8 1.8469 -6.7940 2.1854 21 6 1.8747 -7.2684 -0.6060 22 1 1.0357 -7.5623 0.0248 23 6 1.3641 -6.9198 -2.0074 24 6 0.7400 -8.1689 -2.6369 25 6 1.7794 -9.2927 -2.6602 26 8 2.2352 -9.5459 -1.3296 27 6 2.8704 -8.4270 -0.7077 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1498 1.1384 0.5138 32 1 1.6083 2.0283 0.5138 33 1 4.0223 4.4485 -0.8504 34 1 0.7585 -2.5299 0.8903 35 1 0.7591 -2.5303 -0.8896 36 1 3.0070 -3.5778 -0.8878 37 1 3.0057 -3.5771 0.8922 38 1 1.0085 -4.9570 0.7836 39 1 3.7370 -7.1577 1.4345 40 1 3.4088 -5.4718 1.9013 41 1 2.0386 -7.0125 3.1077 42 1 0.6129 -6.1331 -1.9365 43 1 2.1954 -6.5775 -2.6237 44 1 -0.1218 -8.4821 -2.0475 45 1 0.4226 -7.9440 -3.6550 46 1 1.3279 -10.1971 -3.0679 47 1 2.6228 -8.9949 -3.2830 48 1 3.7281 -8.1177 -1.3048 49 1 3.2046 -8.7077 0.2911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365305470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:01 Heat of formation + Delta-G solvation = -144.059719 kcal Electronic energy + Delta-G solvation = -26957.960997 eV Core-core repulsion = 23112.515600 eV Total energy + Delta-G solvation = -3845.445397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97143 -39.02336 -37.90381 -35.73240 -34.80218 -33.79338 -32.65454 -32.23409 -30.09385 -28.02446 -27.23198 -25.74607 -24.96647 -24.36817 -23.27333 -21.74089 -21.04710 -20.22075 -18.31332 -17.72007 -16.60591 -16.56755 -16.42716 -16.15054 -15.81565 -15.45392 -15.05123 -14.94922 -14.80234 -14.52158 -14.16528 -13.95617 -13.73544 -13.44898 -12.82873 -12.66607 -12.48293 -12.40067 -12.12137 -12.08705 -12.01268 -11.80031 -11.51457 -11.35487 -11.23956 -11.05965 -11.00245 -10.84687 -10.64578 -10.56441 -10.51097 -10.19673 -10.15264 -9.61616 -9.60641 -8.89592 -8.44502 -8.43862 -7.63296 -6.04452 -4.08853 3.29609 3.36528 3.39909 3.46782 3.59427 3.72332 3.98950 4.31907 4.45022 4.46915 4.61259 4.76691 4.83465 4.91664 4.96503 5.01581 5.10102 5.18371 5.19724 5.27607 5.28475 5.32577 5.40604 5.41996 5.50196 5.58360 5.63363 5.74899 5.81873 5.86423 5.89929 5.98455 6.10310 6.13667 6.21527 6.25287 6.29235 6.91055 6.99835 7.05512 7.27422 7.36676 7.43817 7.55241 7.92169 8.23834 8.42638 8.90738 9.10466 9.56221 11.03728 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002528 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.419273 B =11071.724772 C =11758.531951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.546 6.546 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.680 5.680 17 C 0.098 3.902 18 H 0.089 0.911 19 C 0.040 3.960 20 O -0.566 6.566 21 C -0.104 4.104 22 H 0.088 0.912 23 C -0.108 4.108 24 C -0.158 4.158 25 C 0.059 3.941 26 O -0.383 6.383 27 C 0.065 3.935 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.348 0.652 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.379 0.621 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.048 0.952 48 H 0.047 0.953 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 -24.154 2.519 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.425 6.425 14 C -0.176 4.176 15 C -0.055 4.055 16 N -0.310 5.310 17 C -0.013 4.013 18 H 0.107 0.893 19 C -0.039 4.039 20 O -0.372 6.372 21 C -0.124 4.124 22 H 0.107 0.893 23 C -0.145 4.145 24 C -0.195 4.195 25 C -0.018 4.018 26 O -0.302 6.302 27 C -0.012 4.012 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.167 0.833 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.226 0.774 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.878 -24.019 1.387 24.766 hybrid contribution 0.787 0.792 0.357 1.173 sum -5.090 -23.227 1.744 23.842 Atomic orbital electron populations 1.21622 0.81393 1.01600 1.01210 1.48159 1.06216 1.07912 1.71288 1.19302 0.92546 0.78133 0.97526 1.21471 1.36405 1.06043 0.92348 0.92440 1.24949 0.95405 0.96412 0.97469 1.69943 1.38646 1.14258 1.30667 0.86436 0.78046 0.78320 0.84586 1.19786 1.20961 1.20878 1.20281 0.88048 0.85159 0.77404 1.90658 1.14016 1.87378 1.50430 1.21596 0.99267 0.92839 1.03932 1.21704 0.94942 0.86981 1.01839 1.60455 1.19300 1.00865 1.50429 1.21613 0.95765 0.91328 0.92576 0.89279 1.22979 0.88334 0.98461 0.94156 1.86448 1.34615 1.89187 1.26906 1.21643 0.99461 0.93678 0.97581 0.89337 1.21506 1.01219 0.97212 0.94601 1.22225 0.99258 0.96376 1.01666 1.22593 0.96441 0.98803 0.83972 1.87924 1.77597 1.35957 1.28705 1.22652 0.93992 0.86721 0.97844 0.93187 0.92510 0.91502 0.93927 0.95060 0.92792 0.89912 0.88709 0.90203 0.94613 0.83327 0.93231 0.93317 0.77432 0.89781 0.92403 0.91242 0.91075 0.89243 0.93354 0.93446 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.29 59.84 0.62 1.98 16 2 N -0.60 -12.88 2.86 -182.96 -0.52 -13.40 16 3 C 0.24 6.46 5.20 -5.19 -0.03 6.44 16 4 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.50 10.40 7.67 -10.98 -0.08 10.32 16 13 O -0.55 -13.64 15.56 5.56 0.09 -13.55 16 14 C -0.14 -1.96 4.51 -27.88 -0.13 -2.09 16 15 C 0.07 1.01 4.77 -3.83 -0.02 0.99 16 16 N -0.68 -7.41 5.38 -106.72 -0.57 -7.99 16 17 C 0.10 0.94 1.99 -67.71 -0.14 0.81 16 18 H 0.09 0.89 7.80 -51.93 -0.40 0.49 16 19 C 0.04 0.34 6.34 37.16 0.24 0.57 16 20 O -0.57 -4.63 12.07 -35.23 -0.43 -5.06 16 21 C -0.10 -0.98 2.02 -90.48 -0.18 -1.17 16 22 H 0.09 0.97 7.43 -51.93 -0.39 0.59 16 23 C -0.11 -1.03 5.05 -26.55 -0.13 -1.17 16 24 C -0.16 -1.33 6.14 -26.59 -0.16 -1.49 16 25 C 0.06 0.50 6.84 37.21 0.25 0.75 16 26 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 27 C 0.07 0.59 5.81 37.21 0.22 0.81 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 30 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.08 1.01 7.40 -51.93 -0.38 0.62 16 35 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 36 H 0.08 1.22 8.01 -51.92 -0.42 0.81 16 37 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 38 H 0.35 3.73 7.93 -39.29 -0.31 3.42 16 39 H 0.05 0.35 6.84 -51.93 -0.36 -0.01 16 40 H 0.05 0.44 7.36 -51.93 -0.38 0.06 16 41 H 0.38 1.64 9.12 45.56 0.42 2.05 16 42 H 0.08 0.89 7.62 -51.93 -0.40 0.50 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.40 8.14 -51.94 -0.42 -0.02 16 49 H 0.09 0.74 6.79 -51.93 -0.35 0.39 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -34.30 386.75 -8.06 -42.35 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.82 Total: 2.33 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 0.03 Total: 3.00 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.36 Total: -47.49 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.72 Total: -23.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.30 -8.06 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365305470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.705 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds