Wall clock time and date at job start Tue Mar 31 2020 10:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00106 * 2 1 4 4 C 1.50697 * 109.46829 * 270.00341 * 3 2 1 5 5 H 1.07999 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99469 * 179.72343 * 4 3 2 7 7 N 1.31511 * 120.00079 * 0.27032 * 6 4 3 8 8 Si 1.86800 * 119.99833 * 180.27014 * 6 4 3 9 9 H 1.48501 * 109.47300 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47051 * 119.99853 * 8 6 4 11 11 H 1.48497 * 109.47356 * 240.00093 * 8 6 4 12 12 C 1.34777 * 120.00325 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00305 * 179.97438 * 12 2 1 14 14 C 1.50705 * 119.99973 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47255 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47002 * 179.97438 * 15 14 12 17 17 C 1.46910 * 111.00005 * 179.97438 * 16 15 14 18 18 H 1.09002 * 109.46463 * 324.99791 * 17 16 15 19 19 C 1.52997 * 109.46963 * 84.99531 * 17 16 15 20 20 O 1.42903 * 109.46750 * 64.65660 * 19 17 16 21 21 C 1.52998 * 109.46965 * 205.00032 * 17 16 15 22 22 H 1.09005 * 109.52256 * 295.74938 * 21 17 16 23 23 C 1.53173 * 109.52431 * 55.87625 * 21 17 16 24 24 C 1.53175 * 109.03749 * 176.88533 * 23 21 17 25 25 C 1.53098 * 109.16285 * 303.02005 * 24 23 21 26 26 O 1.42903 * 109.41399 * 57.60969 * 25 24 23 27 27 C 1.42905 * 114.09446 * 298.83820 * 26 25 24 28 28 H 1.09004 * 109.47000 * 90.00570 * 1 2 3 29 29 H 1.09003 * 109.47301 * 209.99544 * 1 2 3 30 30 H 1.08998 * 109.47287 * 330.00063 * 1 2 3 31 31 H 1.08995 * 109.47229 * 149.99808 * 3 2 1 32 32 H 1.08996 * 109.46597 * 29.99727 * 3 2 1 33 33 H 0.97000 * 119.99729 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46696 * 299.99779 * 14 12 2 35 35 H 1.08995 * 109.47210 * 59.99564 * 14 12 2 36 36 H 1.09008 * 109.46794 * 299.99663 * 15 14 12 37 37 H 1.08995 * 109.47414 * 59.99632 * 15 14 12 38 38 H 1.00896 * 111.00263 * 303.94583 * 16 15 14 39 39 H 1.08997 * 109.46880 * 184.65360 * 19 17 16 40 40 H 1.08997 * 109.47363 * 304.65217 * 19 17 16 41 41 H 0.96704 * 113.99767 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.54526 * 296.75041 * 23 21 17 43 43 H 1.08999 * 109.54431 * 57.02234 * 23 21 17 44 44 H 1.09002 * 109.52294 * 62.92122 * 24 23 21 45 45 H 1.08995 * 109.52688 * 183.04978 * 24 23 21 46 46 H 1.08998 * 109.47929 * 177.58493 * 25 24 23 47 47 H 1.08993 * 109.47991 * 297.61222 * 25 24 23 48 48 H 1.08989 * 109.48701 * 301.17863 * 27 26 25 49 49 H 1.09003 * 109.47938 * 181.13822 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1214 2.8806 -1.6727 7 7 3.5486 3.6207 -0.6731 8 14 3.4260 3.4237 -3.4339 9 1 2.8492 2.4231 -4.3673 10 1 2.7829 4.7425 -3.6635 11 1 4.8875 3.5377 -3.6710 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 7 1.6452 -4.9074 0.0024 17 6 2.5698 -6.0491 0.0031 18 1 3.4526 -5.8019 -0.5865 19 6 2.9884 -6.3654 1.4402 20 8 1.8469 -6.7940 2.1854 21 6 1.8747 -7.2684 -0.6060 22 1 1.0357 -7.5623 0.0248 23 6 1.3641 -6.9198 -2.0074 24 6 0.7400 -8.1689 -2.6369 25 6 1.7794 -9.2927 -2.6602 26 8 2.2352 -9.5459 -1.3296 27 6 2.8704 -8.4270 -0.7077 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1498 1.1384 0.5138 32 1 1.6083 2.0283 0.5138 33 1 4.0223 4.4485 -0.8504 34 1 0.7585 -2.5299 0.8903 35 1 0.7591 -2.5303 -0.8896 36 1 3.0070 -3.5778 -0.8878 37 1 3.0057 -3.5771 0.8922 38 1 1.0085 -4.9570 0.7836 39 1 3.7370 -7.1577 1.4345 40 1 3.4088 -5.4718 1.9013 41 1 2.0386 -7.0125 3.1077 42 1 0.6129 -6.1331 -1.9365 43 1 2.1954 -6.5775 -2.6237 44 1 -0.1218 -8.4821 -2.0475 45 1 0.4226 -7.9440 -3.6550 46 1 1.3279 -10.1971 -3.0679 47 1 2.6228 -8.9949 -3.2830 48 1 3.7281 -8.1177 -1.3048 49 1 3.2046 -8.7077 0.2911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365305470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:01 Heat of formation + Delta-G solvation = -171.052513 kcal Electronic energy + Delta-G solvation = -26959.131493 eV Core-core repulsion = 23112.515600 eV Total energy + Delta-G solvation = -3846.615893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84029 -40.51185 -38.68191 -36.73576 -36.37141 -34.83744 -34.57711 -33.08317 -31.25048 -29.62403 -28.26510 -27.25843 -25.86790 -25.33199 -24.70833 -23.11950 -21.80023 -21.01006 -19.87485 -18.72880 -18.40114 -17.80546 -17.35116 -17.06404 -16.97911 -16.94081 -16.34130 -15.96497 -15.80224 -15.66669 -15.28754 -14.90186 -14.79378 -14.52630 -14.22450 -13.97145 -13.72536 -13.49442 -13.44396 -13.32536 -13.17473 -12.98347 -12.82975 -12.73194 -12.64097 -12.43732 -12.22324 -12.12195 -12.05570 -11.82186 -11.69022 -11.36521 -11.20846 -10.86742 -10.66277 -10.61081 -10.33838 -9.43402 -9.34238 -8.23956 -6.38796 1.35432 1.37547 1.49712 1.84296 2.29442 2.42315 2.93089 3.05226 3.09157 3.49434 3.71791 3.84024 3.90719 4.06252 4.07049 4.10867 4.20088 4.24623 4.30526 4.35707 4.41130 4.44997 4.58423 4.63049 4.64652 4.71173 4.77288 4.81294 4.87247 4.92930 4.97929 5.00092 5.06252 5.07084 5.14791 5.21151 5.21921 5.46518 5.52667 5.55548 5.83498 6.00474 6.04987 6.28450 6.47852 6.68561 6.79318 6.85803 7.27081 7.48399 8.83294 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002528 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.419273 B =11071.724772 C =11758.531951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.117 4.117 15 C 0.086 3.914 16 N -0.671 5.671 17 C 0.094 3.906 18 H 0.083 0.917 19 C 0.046 3.954 20 O -0.577 6.577 21 C -0.093 4.093 22 H 0.076 0.924 23 C -0.108 4.108 24 C -0.153 4.153 25 C 0.054 3.946 26 O -0.401 6.401 27 C 0.065 3.935 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.069 0.931 31 H -0.003 1.003 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.353 0.647 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.396 0.604 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 -25.584 1.691 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.284 3.716 13 O -0.483 6.483 14 C -0.157 4.157 15 C -0.044 4.044 16 N -0.302 5.302 17 C -0.016 4.016 18 H 0.102 0.898 19 C -0.034 4.034 20 O -0.385 6.385 21 C -0.112 4.112 22 H 0.094 0.906 23 C -0.146 4.146 24 C -0.191 4.191 25 C -0.022 4.022 26 O -0.320 6.320 27 C -0.012 4.012 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.015 0.985 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.172 0.828 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.245 0.755 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.419 -25.476 0.579 26.541 hybrid contribution 1.237 1.203 0.670 1.851 sum -6.182 -24.273 1.249 25.079 Atomic orbital electron populations 1.21926 0.77782 1.04032 1.02432 1.48207 1.08486 1.06457 1.71179 1.18781 0.91134 0.80514 0.96018 1.21728 1.36854 1.06369 0.93068 0.92993 1.25884 0.94908 0.96438 1.02081 1.70056 1.39114 1.14743 1.33005 0.85348 0.77901 0.78418 0.79024 1.19130 1.19336 1.20685 1.21385 0.87797 0.86726 0.75740 1.90627 1.16733 1.88282 1.52676 1.21517 0.98936 0.88989 1.06256 1.21466 0.94564 0.88077 1.00283 1.60401 1.19210 0.99988 1.50631 1.21655 0.95374 0.90906 0.93665 0.89841 1.22847 0.88679 0.98698 0.93162 1.86403 1.34625 1.89165 1.28343 1.21499 0.99019 0.93544 0.97130 0.90572 1.21488 1.00797 0.97519 0.94757 1.22193 0.99002 0.95773 1.02143 1.22744 0.96682 0.99502 0.83298 1.87900 1.77825 1.36643 1.29680 1.22698 0.93875 0.86264 0.98383 0.92469 0.88015 0.91228 0.98500 0.95837 0.92378 0.86539 0.86896 0.92379 0.95839 0.82792 0.91651 0.94178 0.75450 0.90765 0.92885 0.91637 0.89923 0.87810 0.92836 0.92936 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.29 127.77 1.31 3.69 16 2 N -0.61 -26.12 2.86 -851.14 -2.43 -28.55 16 3 C 0.26 14.10 5.20 85.63 0.45 14.54 16 4 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.33 5.46 84.66 0.46 0.79 16 7 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 8 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 C 0.49 20.42 7.67 87.66 0.67 21.09 16 13 O -0.60 -31.17 15.56 -3.02 -0.05 -31.22 16 14 C -0.12 -3.15 4.51 29.85 0.13 -3.01 16 15 C 0.09 2.27 4.77 86.30 0.41 2.68 16 16 N -0.67 -13.65 5.38 -491.56 -2.64 -16.30 16 17 C 0.09 1.72 1.99 44.91 0.09 1.81 16 18 H 0.08 1.64 7.80 -2.39 -0.02 1.62 16 19 C 0.05 0.70 6.34 71.98 0.46 1.16 16 20 O -0.58 -8.37 12.07 -148.98 -1.80 -10.17 16 21 C -0.09 -1.63 2.02 -10.70 -0.02 -1.65 16 22 H 0.08 1.57 7.43 -2.38 -0.02 1.55 16 23 C -0.11 -1.94 5.05 30.71 0.16 -1.78 16 24 C -0.15 -2.35 6.14 30.69 0.19 -2.16 16 25 C 0.05 0.82 6.84 72.01 0.49 1.32 16 26 O -0.40 -7.89 10.77 -148.98 -1.60 -9.50 16 27 C 0.06 1.09 5.81 72.01 0.42 1.50 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 30 H 0.07 2.02 7.89 -2.39 -0.02 2.00 16 31 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 32 H 0.02 1.30 7.89 -2.39 -0.02 1.28 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.12 2.40 7.40 -2.39 -0.02 2.38 16 35 H 0.11 2.72 8.11 -2.39 -0.02 2.70 16 36 H 0.06 1.80 8.01 -2.38 -0.02 1.78 16 37 H 0.02 0.68 7.32 -2.39 -0.02 0.66 16 38 H 0.35 6.77 7.93 -89.70 -0.71 6.06 16 39 H 0.07 0.80 6.84 -2.39 -0.02 0.79 16 40 H 0.04 0.69 7.36 -2.39 -0.02 0.68 16 41 H 0.40 2.63 9.12 -74.05 -0.68 1.96 16 42 H 0.07 1.48 7.62 -2.39 -0.02 1.46 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.10 1.45 6.79 -2.39 -0.02 1.43 16 Total: -1.00 -76.92 386.75 -1.20 -78.12 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.44 Total: 18.24 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.46 Total: 8.48 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -4.79 Total: -101.34 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -3.45 Total: -50.88 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.92 -1.20 -78.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365305470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.934 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds