Wall clock time and date at job start Tue Mar 31 2020 10:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00182 * 2 1 4 4 C 1.53001 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.53001 * 110.36537 * 302.17972 * 4 3 2 6 6 O 1.42899 * 109.47256 * 57.82258 * 5 4 3 7 7 C 1.54571 * 110.37191 * 64.51325 * 4 3 2 8 8 C 1.54377 * 105.08835 * 118.82153 * 7 4 3 9 9 N 1.48555 * 104.59533 * 336.15548 * 8 7 4 10 10 C 1.46905 * 110.99889 * 159.04089 * 9 8 7 11 11 C 1.52999 * 109.47137 * 54.58463 * 10 9 8 12 12 C 1.50700 * 109.47412 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99848 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99937 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00284 * 0.02562 * 14 12 11 16 16 C 1.46500 * 119.99777 * 179.97438 * 14 12 11 17 17 C 1.50702 * 109.47063 * 90.00156 * 16 14 12 18 18 H 1.07997 * 120.00240 * 0.02562 * 17 16 14 19 19 C 1.37881 * 120.00228 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99612 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47039 * 90.00342 * 21 19 17 23 23 H 1.48500 * 109.47014 * 210.00154 * 21 19 17 24 24 H 1.48504 * 109.47250 * 329.99874 * 21 19 17 25 25 C 1.48560 * 104.22165 * 39.48960 * 9 8 7 26 26 H 1.08995 * 109.47577 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47349 * 300.00224 * 1 2 3 28 28 H 1.08998 * 109.47043 * 60.00113 * 1 2 3 29 29 H 1.08995 * 109.47285 * 59.99962 * 3 2 1 30 30 H 1.09002 * 109.46904 * 299.99868 * 3 2 1 31 31 H 1.09009 * 109.47268 * 177.81522 * 5 4 3 32 32 H 1.08998 * 109.47327 * 297.81604 * 5 4 3 33 33 H 0.96700 * 114.00536 * 180.02562 * 6 5 4 34 34 H 1.08995 * 110.29758 * 359.92067 * 7 4 3 35 35 H 1.09004 * 110.40408 * 237.77615 * 7 4 3 36 36 H 1.09005 * 110.40645 * 217.37892 * 8 7 4 37 37 H 1.08998 * 110.51556 * 94.99504 * 8 7 4 38 38 H 1.09000 * 109.47225 * 174.58147 * 10 9 8 39 39 H 1.08997 * 109.47331 * 294.58501 * 10 9 8 40 40 H 1.09009 * 109.46987 * 299.99974 * 11 10 9 41 41 H 1.08997 * 109.46980 * 59.99822 * 11 10 9 42 42 H 1.08996 * 109.46840 * 90.00046 * 15 14 12 43 43 H 1.08997 * 109.46980 * 209.99803 * 15 14 12 44 44 H 1.09001 * 109.47001 * 329.99522 * 15 14 12 45 45 H 1.09002 * 109.47470 * 210.00164 * 16 14 12 46 46 H 1.08994 * 109.47449 * 330.00129 * 16 14 12 47 47 H 0.97001 * 119.99630 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.41441 * 79.29212 * 25 9 8 49 49 H 1.09002 * 110.41248 * 201.61513 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.0064 0.3808 1.2130 6 8 3.3956 -0.9110 1.1951 7 6 4.0221 0.5207 -1.3090 8 6 4.9216 1.5774 -1.9854 9 7 4.4555 2.8750 -1.4323 10 6 5.4893 3.9092 -1.5734 11 6 5.9192 4.0039 -3.0387 12 6 6.9801 5.0643 -3.1835 13 8 7.3558 5.6831 -2.2104 14 7 7.5122 5.3244 -4.3941 15 6 7.0588 4.5766 -5.5695 16 6 8.5432 6.3556 -4.5349 17 6 9.9037 5.7343 -4.3500 18 1 9.9916 4.6770 -4.1483 19 6 11.0363 6.5156 -4.4395 20 7 10.9292 7.8030 -4.6856 21 14 12.7226 5.7453 -4.2110 22 1 13.2383 5.2842 -5.5250 23 1 13.6532 6.7517 -3.6396 24 1 12.6171 4.5878 -3.2868 25 6 4.1844 2.5853 -0.0007 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8463 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 5.0903 0.2706 1.1776 32 1 3.7241 0.9035 2.1269 33 1 3.6491 -1.4764 1.9375 34 1 3.1734 0.2802 -1.9493 35 1 4.5959 -0.3793 -1.0879 36 1 4.7871 1.5549 -3.0668 37 1 5.9676 1.4088 -1.7296 38 1 5.0889 4.8698 -1.2495 39 1 6.3505 3.6484 -0.9583 40 1 6.3196 3.0432 -3.3627 41 1 5.0580 4.2647 -3.6539 42 1 6.2186 5.0969 -6.0292 43 1 7.8750 4.4989 -6.2877 44 1 6.7456 3.5776 -5.2660 45 1 8.4789 6.8006 -5.5279 46 1 8.3906 7.1273 -3.7804 47 1 11.7260 8.3527 -4.7482 48 1 5.1145 2.5735 0.5676 49 1 3.4966 3.3229 0.4129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412994401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:40 Heat of formation + Delta-G solvation = -149.047379 kcal Electronic energy + Delta-G solvation = -27035.795139 eV Core-core repulsion = 23190.133461 eV Total energy + Delta-G solvation = -3845.661679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08055 -40.42905 -38.32474 -37.29412 -36.60511 -34.87160 -34.53003 -31.55254 -30.62621 -29.50901 -28.00407 -27.31704 -26.37109 -25.79139 -24.82733 -23.90018 -21.77224 -20.32250 -19.66516 -18.71304 -18.11316 -17.99835 -17.44887 -17.08428 -16.87224 -16.64333 -16.59979 -16.20116 -15.96823 -15.42651 -15.25961 -14.98861 -14.53217 -14.36921 -14.07492 -13.98048 -13.78261 -13.60186 -13.45020 -13.24052 -13.12369 -12.83619 -12.72958 -12.62321 -12.57608 -12.27916 -12.26045 -12.21494 -12.00343 -11.88578 -11.74783 -11.69022 -11.31805 -10.71587 -10.65456 -10.60634 -10.39812 -9.54044 -9.41868 -8.23608 -6.38674 1.35241 1.38250 1.48501 1.83624 2.27642 2.41439 2.83484 2.95206 3.05667 3.37789 3.60636 3.80424 3.86944 4.02698 4.05239 4.12627 4.28926 4.31748 4.40195 4.45490 4.48659 4.54710 4.55075 4.62209 4.62509 4.66622 4.68588 4.72843 4.84967 4.88055 4.92318 4.92654 4.96106 4.99776 5.04132 5.06414 5.20556 5.22608 5.30400 5.55060 5.80615 5.83551 5.93054 6.04958 6.41829 6.68430 6.78800 7.04441 7.26948 7.47785 8.83447 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.002397 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.470925 B =11677.591879 C =12111.369695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.382 6.382 3 C 0.084 3.916 4 C -0.060 4.060 5 C 0.094 3.906 6 O -0.563 6.563 7 C -0.094 4.094 8 C 0.022 3.978 9 N -0.507 5.507 10 C 0.070 3.930 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.601 6.601 14 N -0.612 5.612 15 C 0.078 3.922 16 C 0.258 3.742 17 C -0.542 4.542 18 H 0.052 0.948 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.273 1.273 25 C 0.044 3.956 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.386 0.614 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.023 0.977 46 H -0.003 1.003 47 H 0.267 0.733 48 H 0.053 0.947 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 -18.495 7.979 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C 0.007 3.993 4 C -0.061 4.061 5 C 0.015 3.985 6 O -0.369 6.369 7 C -0.132 4.132 8 C -0.105 4.105 9 N -0.231 5.231 10 C -0.058 4.058 11 C -0.158 4.158 12 C 0.283 3.717 13 O -0.483 6.483 14 N -0.343 5.343 15 C -0.064 4.064 16 C 0.136 3.864 17 C -0.581 4.581 18 H 0.071 0.929 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.084 4.084 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.041 0.959 46 H 0.015 0.985 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.372 -17.728 7.580 28.050 hybrid contribution 1.987 0.152 1.005 2.232 sum -18.385 -17.576 8.585 26.844 Atomic orbital electron populations 1.22825 0.81057 1.03127 1.00044 1.88062 1.19560 1.27116 1.95278 1.22386 0.91847 0.84937 1.00088 1.21385 0.94531 0.94076 0.96060 1.22047 0.95492 0.84703 0.96245 1.86661 1.72071 1.25882 1.52274 1.22223 0.99116 0.97016 0.94894 1.23319 0.97282 0.88615 1.01316 1.65484 1.38263 1.06104 1.13239 1.21816 0.92736 0.96245 0.95035 1.21604 0.97419 0.97812 0.98948 1.21347 0.83276 0.84713 0.82317 1.90631 1.64531 1.53785 1.39305 1.48208 1.39060 1.38378 1.08656 1.21939 1.00288 0.96781 0.87355 1.18755 0.85526 0.86610 0.95489 1.21689 0.92115 0.95133 1.49122 0.92931 1.25895 1.03624 0.95279 0.94569 1.70057 1.30843 1.06199 1.49727 0.85392 0.78392 0.78020 0.78858 1.18719 1.20599 1.19801 1.23077 1.00105 0.95468 0.89758 0.89119 0.93902 0.94043 0.93256 0.93123 0.93634 0.93050 0.76649 0.91067 0.91051 0.88619 0.94015 0.91001 0.95534 0.87257 0.86147 0.91081 0.91633 0.88712 0.95880 0.98494 0.92381 0.92900 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.38 -7.54 8.31 -127.67 -1.06 -8.60 16 3 C 0.08 1.49 4.53 71.98 0.33 1.82 16 4 C -0.06 -1.06 0.73 -51.18 -0.04 -1.09 16 5 C 0.09 1.46 5.65 71.98 0.41 1.87 16 6 O -0.56 -9.37 11.27 -127.67 -1.44 -10.80 16 7 C -0.09 -1.76 5.95 31.60 0.19 -1.57 16 8 C 0.02 0.43 5.11 86.45 0.44 0.87 16 9 N -0.51 -11.03 5.49 -881.50 -4.84 -15.87 16 10 C 0.07 1.94 4.35 86.30 0.38 2.31 16 11 C -0.12 -3.25 3.97 29.85 0.12 -3.13 16 12 C 0.49 20.59 7.67 87.66 0.67 21.26 16 13 O -0.60 -31.37 15.56 -3.04 -0.05 -31.41 16 14 N -0.61 -26.19 2.86 -851.15 -2.43 -28.62 16 15 C 0.08 2.32 10.24 127.77 1.31 3.62 16 16 C 0.26 14.15 5.16 85.63 0.44 14.59 16 17 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 18 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 19 C 0.01 0.30 5.46 84.66 0.46 0.77 16 20 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 21 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.04 0.84 5.57 86.45 0.48 1.32 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.39 3.21 9.12 -74.06 -0.68 2.54 16 34 H 0.07 1.41 7.62 -2.39 -0.02 1.39 16 35 H 0.07 1.36 7.63 -2.38 -0.02 1.34 16 36 H 0.10 1.63 7.67 -2.38 -0.02 1.62 16 37 H 0.04 0.86 7.99 -2.39 -0.02 0.84 16 38 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 39 H 0.03 0.83 7.83 -2.39 -0.02 0.81 16 40 H 0.11 2.55 6.10 -2.38 -0.01 2.53 16 41 H 0.12 2.74 8.11 -2.39 -0.02 2.72 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 44 H 0.09 2.08 6.44 -2.39 -0.02 2.07 16 45 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 46 H 0.00 -0.20 7.42 -2.39 -0.02 -0.21 16 47 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.05 1.03 7.54 -2.39 -0.02 1.01 16 49 H 0.09 1.63 7.86 -2.39 -0.02 1.61 16 Total: -1.00 -77.77 389.25 -0.59 -78.36 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.24 Total: 13.31 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.67 Total: 12.85 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -6.99 Total: -100.94 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.55 Total: -50.82 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -77.77 -0.59 -78.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412994401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds