Wall clock time and date at job start Tue Mar 31 2020 10:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00096 * 2 1 4 4 C 1.52998 * 109.47257 * 179.97438 * 3 2 1 5 5 C 1.53004 * 110.27111 * 57.91150 * 4 3 2 6 6 O 1.42906 * 109.47159 * 302.08416 * 5 4 3 7 7 C 1.54591 * 110.31163 * 295.71591 * 4 3 2 8 8 C 1.54942 * 102.91948 * 263.04345 * 7 4 3 9 9 N 1.48536 * 103.22418 * 322.58184 * 8 7 4 10 10 C 1.46901 * 110.99521 * 159.72350 * 9 8 7 11 11 C 1.52996 * 109.47309 * 69.87619 * 10 9 8 12 12 C 1.50696 * 109.47219 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00266 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00011 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00038 * 0.02562 * 14 12 11 16 16 C 1.46503 * 119.99876 * 180.02562 * 14 12 11 17 17 C 1.50700 * 109.47187 * 90.00514 * 16 14 12 18 18 H 1.08010 * 119.99899 * 359.97438 * 17 16 14 19 19 C 1.37873 * 120.00593 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00743 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99396 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47087 * 90.00538 * 21 19 17 23 23 H 1.48501 * 109.46914 * 210.00227 * 21 19 17 24 24 H 1.48497 * 109.47272 * 329.99885 * 21 19 17 25 25 C 1.47900 * 105.82189 * 39.21141 * 9 8 7 26 26 H 1.09005 * 109.47308 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47516 * 300.00389 * 1 2 3 28 28 H 1.09001 * 109.46978 * 60.00447 * 1 2 3 29 29 H 1.08996 * 109.47165 * 59.99206 * 3 2 1 30 30 H 1.09005 * 109.46702 * 299.99676 * 3 2 1 31 31 H 1.08992 * 109.47325 * 62.08984 * 5 4 3 32 32 H 1.09001 * 109.46968 * 182.09128 * 5 4 3 33 33 H 0.96698 * 113.99903 * 180.02562 * 6 5 4 34 34 H 1.08990 * 110.72764 * 144.68276 * 7 4 3 35 35 H 1.08999 * 110.71949 * 21.39837 * 7 4 3 36 36 H 1.09004 * 110.66299 * 204.14962 * 8 7 4 37 37 H 1.09000 * 110.66998 * 81.01629 * 8 7 4 38 38 H 1.09000 * 109.46947 * 189.87391 * 10 9 8 39 39 H 1.08996 * 109.47545 * 309.87352 * 10 9 8 40 40 H 1.09000 * 109.46930 * 299.99782 * 11 10 9 41 41 H 1.08996 * 109.47035 * 59.99421 * 11 10 9 42 42 H 1.09000 * 109.46963 * 90.00100 * 15 14 12 43 43 H 1.09002 * 109.47077 * 209.99850 * 15 14 12 44 44 H 1.09000 * 109.47375 * 329.99963 * 15 14 12 45 45 H 1.08999 * 109.46973 * 210.00148 * 16 14 12 46 46 H 1.08994 * 109.47250 * 330.00230 * 16 14 12 47 47 H 0.97001 * 120.00346 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.91806 * 94.01913 * 25 9 8 49 49 H 1.08995 * 109.91750 * 215.12045 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0042 0.3826 -1.2150 6 8 3.3940 -0.9096 -1.1973 7 6 4.0202 0.5155 1.3072 8 6 4.4084 1.7259 2.1931 9 7 5.0083 2.6780 1.2236 10 6 5.0020 4.0466 1.7573 11 6 6.0043 4.1496 2.9087 12 6 5.9983 5.5538 3.4558 13 8 5.2643 6.3897 2.9727 14 7 6.8079 5.8804 4.4826 15 6 7.6942 4.8706 5.0665 16 6 6.8016 7.2453 5.0148 17 6 5.7795 7.3499 6.1172 18 1 5.1929 6.4861 6.3935 19 6 5.5923 8.5485 6.7725 20 7 4.7008 8.6397 7.7349 21 14 6.6064 10.0426 6.2942 22 1 5.9007 10.7995 5.2291 23 1 6.7924 10.9152 7.4812 24 1 7.9323 9.6008 5.7920 25 6 4.1823 2.5823 0.0005 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.7197 0.9062 -2.1276 32 1 5.0881 0.2728 -1.1819 33 1 3.6467 -1.4741 -1.9405 34 1 4.8869 -0.1176 1.1177 35 1 3.2159 -0.0578 1.7682 36 1 5.1393 1.4324 2.9466 37 1 3.5245 2.1593 2.6611 38 1 5.2814 4.7453 0.9688 39 1 4.0040 4.2900 2.1216 40 1 5.7249 3.4509 3.6972 41 1 7.0024 3.9062 2.5444 42 1 8.6518 4.8830 4.5460 43 1 7.8515 5.0920 6.1221 44 1 7.2387 3.8854 4.9659 45 1 7.7885 7.4856 5.4104 46 1 6.5494 7.9449 4.2179 47 1 4.5689 9.4830 8.1956 48 1 3.4083 3.3496 0.0142 49 1 4.8101 2.7040 -0.8821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412994406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:44 Heat of formation + Delta-G solvation = -118.262413 kcal Electronic energy + Delta-G solvation = -27064.865351 eV Core-core repulsion = 23220.538609 eV Total energy + Delta-G solvation = -3844.326742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16330 -39.04377 -37.51382 -36.58492 -34.94962 -33.70485 -32.53250 -30.57673 -29.67531 -28.28368 -27.34908 -25.95115 -25.60656 -24.72531 -23.51707 -22.03264 -20.76309 -19.47665 -18.34461 -17.45689 -16.96270 -16.67836 -16.47960 -16.21978 -15.79852 -15.51586 -15.31747 -15.04895 -14.58205 -14.32396 -14.24887 -14.01357 -13.42522 -13.17775 -12.85806 -12.70387 -12.52831 -12.37219 -12.33760 -12.09392 -11.98208 -11.75543 -11.60020 -11.54960 -11.30538 -11.20755 -10.97345 -10.91836 -10.71362 -10.63388 -10.50939 -10.14151 -10.04819 -9.74698 -9.54515 -9.00074 -8.59207 -8.54897 -7.69103 -6.08974 -4.07673 3.29020 3.34861 3.36654 3.36945 3.42260 3.72101 3.92416 4.12317 4.39419 4.39844 4.54731 4.78518 4.95992 5.02117 5.07489 5.12299 5.13132 5.16460 5.21075 5.21572 5.24886 5.28391 5.29556 5.40407 5.42884 5.47568 5.58896 5.60469 5.72480 5.80061 5.85382 5.88985 5.97190 6.02397 6.09029 6.09978 6.18880 6.69522 6.76383 6.92077 6.95597 7.03235 7.34742 7.51660 7.61193 8.26192 8.47058 8.92653 8.99667 9.51452 11.04486 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002446 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.037910 B =11444.012694 C =11900.233055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.076 3.924 4 C -0.067 4.067 5 C 0.096 3.904 6 O -0.548 6.548 7 C -0.099 4.099 8 C 0.026 3.974 9 N -0.516 5.516 10 C 0.063 3.937 11 C -0.131 4.131 12 C 0.507 3.493 13 O -0.546 6.546 14 N -0.599 5.599 15 C 0.084 3.916 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.049 3.951 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.368 0.632 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.053 0.947 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 -19.542 -17.728 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C -0.001 4.001 4 C -0.068 4.068 5 C 0.018 3.982 6 O -0.351 6.351 7 C -0.137 4.137 8 C -0.101 4.101 9 N -0.240 5.240 10 C -0.065 4.065 11 C -0.172 4.172 12 C 0.293 3.707 13 O -0.424 6.424 14 N -0.331 5.331 15 C -0.060 4.060 16 C 0.094 3.906 17 C -0.567 4.567 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.079 4.079 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.213 0.787 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.571 -18.988 -17.381 25.748 hybrid contribution -0.366 1.213 -0.312 1.305 sum -0.937 -17.775 -17.693 25.098 Atomic orbital electron populations 1.22718 0.82152 1.02430 0.99490 1.88102 1.18208 1.26247 1.95121 1.22485 0.92429 0.85456 0.99739 1.21456 0.93639 0.95041 0.96659 1.22069 0.95765 0.84493 0.95861 1.86716 1.71886 1.25617 1.50863 1.22434 1.01333 0.96643 0.93279 1.23395 0.98242 0.92949 0.95536 1.64781 1.48534 1.06616 1.04080 1.21994 0.98606 0.88808 0.97141 1.21562 1.01703 0.95425 0.98491 1.20348 0.80298 0.89713 0.80294 1.90659 1.40036 1.51612 1.60056 1.47842 1.39670 1.12844 1.32716 1.21663 0.93076 0.91485 0.99795 1.19657 0.97300 0.78785 0.94855 1.21333 1.20514 0.98351 1.16455 0.90850 1.24867 0.95064 0.98522 0.94639 1.69896 1.33954 1.26273 1.23575 0.86834 0.81171 0.83256 0.78329 1.19921 1.21063 1.19049 1.22753 0.95798 0.94301 0.95048 0.89818 0.94523 0.94608 0.93523 0.93655 0.94235 0.93327 0.78651 0.90582 0.90205 0.89637 0.93488 0.89976 0.93522 0.89468 0.88763 0.93609 0.90657 0.92057 0.95255 0.94590 0.92565 0.92908 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.36 -3.92 8.04 -57.53 -0.46 -4.38 16 3 C 0.08 0.76 4.56 37.16 0.17 0.93 16 4 C -0.07 -0.64 0.67 -153.15 -0.10 -0.75 16 5 C 0.10 0.80 5.62 37.16 0.21 1.01 16 6 O -0.55 -4.92 11.35 -57.53 -0.65 -5.57 16 7 C -0.10 -1.01 5.87 -24.87 -0.15 -1.15 16 8 C 0.03 0.29 5.81 -1.89 -0.01 0.28 16 9 N -0.52 -5.98 5.26 -230.45 -1.21 -7.20 16 10 C 0.06 0.88 3.98 -3.83 -0.02 0.86 16 11 C -0.13 -1.91 4.31 -27.89 -0.12 -2.03 16 12 C 0.51 10.30 7.67 -10.99 -0.08 10.21 16 13 O -0.55 -13.39 15.56 5.56 0.09 -13.30 16 14 N -0.60 -12.44 2.86 -182.96 -0.52 -12.96 16 15 C 0.08 1.29 10.24 59.85 0.61 1.90 16 16 C 0.21 5.32 4.23 -5.19 -0.02 5.30 16 17 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 18 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 21 Si 0.88 21.74 27.47 -169.99 -4.67 17.08 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 25 C 0.05 0.49 6.00 -2.75 -0.02 0.48 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.37 1.75 9.12 45.56 0.42 2.16 16 34 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.08 0.88 7.45 -51.93 -0.39 0.49 16 36 H 0.09 0.88 7.76 -51.93 -0.40 0.48 16 37 H 0.05 0.55 7.85 -51.93 -0.41 0.15 16 38 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 39 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 40 H 0.09 1.17 6.51 -51.93 -0.34 0.83 16 41 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 45 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 46 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 48 H 0.05 0.55 7.31 -51.93 -0.38 0.17 16 49 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -35.82 386.17 -7.70 -43.52 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.00 Total: -0.56 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 1.15 Total: 4.71 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.96 Total: -47.31 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -1.03 Total: -23.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.82 -7.70 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412994406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.742 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds